RchiOBHm_Chr2g0168161

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003949
Physical Location & Seq
Forward (+)
82616723 .. 82618615
1893 bp
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UTR
Exon/CDS
Intron
PRQ53586

Sequence Viewer

Length: 192 bp
ATGTTGTCCCCATCGACTCTGTACAAAGCTTACCTTGTGGTCAAGTTTGCTCGAAATGCTTTTGGATTTAAACACCTACCTGGGGAGGTCTCTGTAGGTCTGGAGGGAGGAGAACGTACTAAGCAGACTCTGCTTCTTCACATCGATGGAAAACTACGAAAGAGAGATGGCTTACTCAAAAGAGAGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

63

Amino Acids

7.04

Weight (kDa)

10.09

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 1 - 49 4.6e-07 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 23, 118
AfiI CCNNNNNNNGG 1 cut(s) 82
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
Alw26I GTCTC 1 cut(s) 94
AlwNI CAGNNNCTG 1 cut(s) 130
BccI CCATC 3 cut(s) 19, 140, 161
BciT130I CCWGG 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 94
BfmI CTRYAG 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 81
BpmI CTGGAG 1 cut(s) 122
Bsa29I ATCGAT 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 82
BseBI CCWGG 1 cut(s) 81
BseCI ATCGAT 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 80
BseLI CCNNNNNNNGG 1 cut(s) 82
BseRI GAGGAG 1 cut(s) 123
BshVI ATCGAT 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 94
Bso31I GGTCTC 1 cut(s) 94
Bsp1407I TGTACA 1 cut(s) 21
BspDI ATCGAT 1 cut(s) 144
BspTNI GGTCTC 1 cut(s) 94
BsrGI TGTACA 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 130
BstAUI TGTACA 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 120
BstMAI GTCTC 1 cut(s) 94
BstMWI GCNNNNNNNGC 2 cut(s) 56, 130
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 93
Bsu15I ATCGAT 1 cut(s) 144
BsuTUI ATCGAT 1 cut(s) 144
CaiI CAGNNNCTG 1 cut(s) 130
ClaI ATCGAT 1 cut(s) 144
Csp6I GTAC 2 cut(s) 22, 117
CviJI RGCY 2 cut(s) 29, 171
CviKI_1 RGCY 2 cut(s) 29, 171
CviQI GTAC 2 cut(s) 22, 117
DdeI CTNAG 1 cut(s) 120
DraI TTTAAA 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 79
FalI AAGNNNNNCTT 2 cut(s) 18, 50
GsuI CTGGAG 1 cut(s) 122
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 2 cut(s) 16, 127
Hpy188III TCNNGA 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 130
HpyF3I CTNAG 1 cut(s) 120
HpySE526I ACGT 1 cut(s) 115
LpnPI CCDG 3 cut(s) 66, 86, 93
MaeII ACGT 1 cut(s) 115
MboII GAAGA 1 cut(s) 128
MlyI GAGTC 2 cut(s) 10, 121
MnlI CCTC 4 cut(s) 79, 97, 101, 178
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 2 cut(s) 56, 130
PleI GAGTC 2 cut(s) 10, 121
PpsI GAGTC 2 cut(s) 10, 121
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PstNI CAGNNNCTG 1 cut(s) 130
RsaI GTAC 2 cut(s) 23, 118
RsaNI GTAC 2 cut(s) 22, 117
RseI CAYNNNNRTG 1 cut(s) 144
SaqAI TTAA 1 cut(s) 69
SchI GAGTC 2 cut(s) 10, 121
ScrFI CCNGG 1 cut(s) 81
SetI ASST 7 cut(s) 31, 36, 78, 82, 90, 100, 118
SfcI CTRYAG 1 cut(s) 93
SgeI CNNG 6 cut(s) 47, 55, 63, 92, 93, 113
SmiMI CAYNNNNRTG 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 79
TaiI ACGT 1 cut(s) 118
TaqI TCGA 3 cut(s) 14, 52, 144
TatI WGTACW 1 cut(s) 21
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.