Rorug06G0458300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003949
Physical Location & Seq
Forward (+)
58532027 .. 58534127
2101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0458300.1

Sequence Viewer

Length: 1311 bp
ATGTGGTTGGACCTGAGGTTAGGCCATAAGACCTACCCAGTGGAGAAAGATCGAACAACCTCTTCTGAGAAAATCCAAAATTCTGAGCATACTGACCTGAATGGAACAGGAAATGGTTCTTCAGTGACCAGAGTCCCTGAAGAGAACAAAGGTTCAGAGACTCCAATATTGGATGTATATACGATATCTGATATGAACAAGCTTTTGCATCATAGTCGGACCTCATACCACAATGGTCTTCGTCCATATATAGACCAAGAGATTCAATATGCAGCATCACAGATTGGAAATGCACCCTTTATAGAGAATGATCCGAATCTTTATGCTCCTCTTTATCGGAATCTTTCCATGTTTAGAAGGAGCTATGAATTAATGGAGAGCACTCTTAAAGTATACACATACATTGAAGGAGAAGGACCTATAATGCACACGCCAGTACTCAAAGGCATATATGCTTCTGAGGGATGGTTCATGAAGCAGCTCCAAGATCACAAAAAATTTGTTACTAAAGACCCTCAGAAAGCGCACCTCTATTACTTACCTTTTAGCTCTCTAATTAATAACTACATCAACCTGATTGCGGGGAAATATTCTTTCTGGAACAGAACTGGTGGAGCAGATCATTTTCTTGTTGCTTGCCATGACTGGGCTCCAACAGAAACAAAGAAATACATGTCTAAGTGCATTAGGTCCCTTTGCAATGCTGATATGAAAGAAGGCTTTGTATTAGGCAAGGATGTGTCTCTTCCTGAAACAAACGTTCACGTCAAAAATCCTCTAAGAAATCTAGGAGGCAACCGTCCTTCTGAGAGGTCGATACTTGCTTTCTTTGCTGGAAAGATGCATGGTTATGTTCGGGCGATTCTGCTGCAGCATTGGGAAAACAAAGATCCCGACATGAAAATTTTTGGTCGATTACCTAGGGGAAAAGGCAACAAGAACTATGTGCACCATATGAAAAGCAGCAAGTACTGCATTTGTGCAAAAGGTTATGAAGTCAACAGTCCAAGAGTGGTAGAGGCCATTTTCTACGAGTGTGTTCCAGTGATTATATCAGACAATTTTGTGCCTCCATTTTTCGAAGTTCTCAATTGGGAGTCGTTTGCTGTTTTCGTCTTGGAGAAAGATATTCCGAATTTGAAGAAGATATTGCTTGCAATCCCAGAGAAGAGATATCTACAGATGCAAACGAGGGTGAAAAGGGTACAACAGCATTTTCTGTGGCATGTTATGCCTGAAAAGTATGACATTTTTCATATGATACTCCACTCTATTTGGTACAGTAGACTCTATCAGATAAAATCCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

436

Amino Acids

50.69

Weight (kDa)

9.1

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 126 - 384 2.3e-59 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 393, 1285
AciI CCGC 1 cut(s) 581
AclI AACGTT 1 cut(s) 759
AclWI GGATC 2 cut(s) 305, 884
AcsI RAATTY 4 cut(s) 79, 497, 903, 1135
AcuI CTGAAG 2 cut(s) 105, 159
AfaI GTAC 4 cut(s) 438, 971, 1206, 1280
AfiI CCNNNNNNNGG 2 cut(s) 580, 646
AflIII ACRYGT 1 cut(s) 672
AgsI TTSAA 3 cut(s) 266, 407, 1141
AjiI CACGTC 1 cut(s) 766
AluBI AGCT 5 cut(s) 202, 363, 481, 549, 1308
AluI AGCT 5 cut(s) 202, 363, 481, 549, 1308
Alw21I GWGCWC 2 cut(s) 383, 951
Alw26I GTCTC 2 cut(s) 152, 747
Alw44I GTGCAC 1 cut(s) 947
AlwI GGATC 2 cut(s) 305, 884
AoxI GGCC 2 cut(s) 22, 1020
ApaLI GTGCAC 1 cut(s) 947
ApeKI GCWGC 5 cut(s) 272, 478, 868, 871, 963
ApoI RAATTY 4 cut(s) 79, 497, 903, 1135
AseI ATTAAT 2 cut(s) 371, 558
Asp700I GAANNNNTTC 1 cut(s) 115
AspA2I CCTAGG 1 cut(s) 920
AspLEI GCGC 1 cut(s) 526
AspS9I GGNCC 4 cut(s) 10, 219, 416, 690
AsuHPI GGTGA 1 cut(s) 1207
AsuII TTCGAA 1 cut(s) 1080
AvaII GGWCC 4 cut(s) 10, 219, 416, 690
AvrII CCTAGG 1 cut(s) 920
AxyI CCTNAGG 1 cut(s) 14
BaeGI GKGCMC 1 cut(s) 951
BanII GRGCYC 1 cut(s) 652
BbsI GAAGAC 1 cut(s) 230
Bbv12I GWGCWC 2 cut(s) 383, 951
BbvI GCAGC 5 cut(s) 284, 490, 855, 883, 975
BccI CCATC 1 cut(s) 459
BcgI CGANNNNNNTGC 4 cut(s) 197, 231, 850, 884
BcoDI GTCTC 2 cut(s) 152, 747
BfaI CTAG 2 cut(s) 788, 921
BfmI CTRYAG 2 cut(s) 869, 1178
BisI GCNGC 5 cut(s) 273, 479, 869, 872, 964
BlnI CCTAGG 1 cut(s) 920
BlsI GCNGC 5 cut(s) 274, 480, 870, 873, 965
BmcAI AGTACT 2 cut(s) 438, 971
Bme18I GGWCC 4 cut(s) 10, 219, 416, 690
BmgBI CACGTC 1 cut(s) 766
BmgT120I GGNCC 4 cut(s) 10, 219, 416, 690
BmiI GGNNCC 2 cut(s) 651, 692
BmrI ACTGGG 2 cut(s) 32, 655
BmsI GCATC 4 cut(s) 217, 284, 831, 1173
BmuI ACTGGG 2 cut(s) 32, 655
BoxI GACNNNNGTC 1 cut(s) 131
BpiI GAAGAC 1 cut(s) 230
Bpu14I TTCGAA 1 cut(s) 1080
BsaBI GATNNNNATC 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 920
Bsc4I CCNNNNNNNGG 2 cut(s) 580, 646
Bse1I ACTGG 5 cut(s) 38, 434, 613, 650, 1043
Bse21I CCTNAGG 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 706
Bse8I GATNNNNATC 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 920
BseGI GGATG 3 cut(s) 178, 470, 742
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 2 cut(s) 580, 646
BseMI GCAATG 1 cut(s) 706
BseMII CTCAG 6 cut(s) 5, 57, 75, 450, 530, 798
BseNI ACTGG 5 cut(s) 38, 434, 613, 650, 1043
BseRI GAGGAG 1 cut(s) 318
BseSI GKGCMC 1 cut(s) 951
BseXI GCAGC 5 cut(s) 284, 490, 855, 883, 975
BshFI GGCC 2 cut(s) 24, 1022
BsiHKAI GWGCWC 2 cut(s) 383, 951
BslFI GGGAC 2 cut(s) 119, 676
BslI CCNNNNNNNGG 2 cut(s) 580, 646
BsmAI GTCTC 2 cut(s) 152, 747
BsmFI GGGAC 2 cut(s) 119, 676
BsnI GGCC 2 cut(s) 24, 1022
Bsp119I TTCGAA 1 cut(s) 1080
Bsp1286I GDGCHC 3 cut(s) 383, 652, 951
Bsp143I GATC 5 cut(s) 49, 310, 487, 619, 889
BspACI CCGC 1 cut(s) 581
BspANI GGCC 2 cut(s) 24, 1022
BspCNI CTCAG 6 cut(s) 6, 58, 76, 451, 529, 799
BspHI TCATGA 1 cut(s) 471
BspLI GGNNCC 2 cut(s) 651, 692
BspMAI CTGCAG 1 cut(s) 873
BspPI GGATC 2 cut(s) 305, 884
BspT104I TTCGAA 1 cut(s) 1080
BsrDI GCAATG 1 cut(s) 706
BsrI ACTGG 5 cut(s) 38, 434, 613, 650, 1043
BssECI CCNNGG 1 cut(s) 920
BssMI GATC 5 cut(s) 49, 310, 487, 619, 889
BssNAI GTATAC 1 cut(s) 394
BssT1I CCWWGG 1 cut(s) 920
Bst1107I GTATAC 1 cut(s) 394
Bst4CI ACNGT 3 cut(s) 800, 1004, 1283
Bst6I CTCTTC 4 cut(s) 67, 135, 750, 1163
BstAPI GCANNNNNTGC 2 cut(s) 972, 1231
BstBI TTCGAA 1 cut(s) 1080
BstC8I GCNNGC 2 cut(s) 637, 1155
BstDEI CTNAG 8 cut(s) 14, 66, 84, 459, 516, 678, 779, 807
BstF5I GGATG 3 cut(s) 178, 470, 742
BstHHI GCGC 1 cut(s) 526
BstKTI GATC 5 cut(s) 52, 313, 490, 622, 892
BstMAI GTCTC 2 cut(s) 152, 747
BstMBI GATC 5 cut(s) 49, 310, 487, 619, 889
BstMWI GCNNNNNNNGC 3 cut(s) 830, 972, 1231
BstNSI RCATGY 2 cut(s) 676, 1229
BstPAI GACNNNNGTC 1 cut(s) 131
BstSFI CTRYAG 2 cut(s) 869, 1178
BstSLI GKGCMC 1 cut(s) 951
BstV1I GCAGC 5 cut(s) 284, 490, 855, 883, 975
BstV2I GAAGAC 1 cut(s) 230
BstX2I RGATCY 1 cut(s) 889
BstYI RGATCY 1 cut(s) 889
BstZ17I GTATAC 1 cut(s) 394
Bsu36I CCTNAGG 1 cut(s) 14
BsuRI GGCC 2 cut(s) 24, 1022
BtrI CACGTC 1 cut(s) 766
BtsCI GGATG 3 cut(s) 178, 470, 742
BtsIMutI CAGTG 3 cut(s) 45, 129, 1050
Cac8I GCNNGC 2 cut(s) 637, 1155
CciI TCATGA 1 cut(s) 471
CfoI GCGC 1 cut(s) 526
Cfr13I GGNCC 4 cut(s) 10, 219, 416, 690
Csp6I GTAC 4 cut(s) 437, 970, 1205, 1279
CspCI CAANNNNNGTGG 2 cut(s) 1256, 1291
CviAII CATG 7 cut(s) 349, 472, 641, 673, 845, 898, 1226
CviJI RGCY 9 cut(s) 24, 202, 363, 481, 549, 650, 720, 1022, 1308
CviKI_1 RGCY 9 cut(s) 24, 202, 363, 481, 549, 650, 720, 1022, 1308
CviQI GTAC 4 cut(s) 437, 970, 1205, 1279
DdeI CTNAG 8 cut(s) 14, 66, 84, 459, 516, 678, 779, 807
DpnI GATC 5 cut(s) 51, 312, 489, 621, 891
DpnII GATC 5 cut(s) 49, 310, 487, 619, 889
Eam1104I CTCTTC 4 cut(s) 67, 135, 750, 1163
EarI CTCTTC 4 cut(s) 67, 135, 750, 1163
Eco130I CCWWGG 1 cut(s) 920
Eco24I GRGCYC 1 cut(s) 652
Eco32I GATATC 2 cut(s) 186, 1175
Eco47I GGWCC 4 cut(s) 10, 219, 416, 690
Eco57I CTGAAG 2 cut(s) 105, 159
Eco81I CCTNAGG 1 cut(s) 14
EcoO109I RGGNCCY 2 cut(s) 416, 690
EcoRV GATATC 2 cut(s) 186, 1175
EcoT14I CCWWGG 1 cut(s) 920
EcoT22I ATGCAT 1 cut(s) 846
EcoT38I GRGCYC 1 cut(s) 652
ErhI CCWWGG 1 cut(s) 920
FaeI CATG 7 cut(s) 352, 475, 644, 676, 848, 901, 1229
FaqI GGGAC 2 cut(s) 119, 676
FatI CATG 7 cut(s) 348, 471, 640, 672, 844, 897, 1225
FauI CCCGC 1 cut(s) 574
FauNDI CATATG 2 cut(s) 954, 1257
FblI GTMKAC 2 cut(s) 393, 1285
Fnu4HI GCNGC 5 cut(s) 273, 479, 869, 872, 964
FokI GGATG 3 cut(s) 185, 477, 749
FriOI GRGCYC 1 cut(s) 652
Fsp4HI GCNGC 5 cut(s) 273, 479, 869, 872, 964
FspBI CTAG 2 cut(s) 788, 921
GlaI GCGC 1 cut(s) 525
GluI GCNGC 5 cut(s) 273, 479, 869, 872, 964
HaeIII GGCC 2 cut(s) 24, 1022
HhaI GCGC 1 cut(s) 526
Hin1II CATG 7 cut(s) 352, 475, 644, 676, 848, 901, 1229
Hin6I GCGC 1 cut(s) 524
HinP1I GCGC 1 cut(s) 524
HincII GTYRAC 1 cut(s) 1000
HindII GTYRAC 1 cut(s) 1000
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 8 cut(s) 132, 160, 262, 316, 340, 862, 1097, 1287
HphI GGTGA 1 cut(s) 1207
Hpy166II GTNNAC 5 cut(s) 394, 763, 949, 1000, 1286
Hpy188III TCNNGA 4 cut(s) 472, 598, 749, 893
Hpy8I GTNNAC 5 cut(s) 394, 763, 949, 1000, 1286
HpyAV CCTTC 5 cut(s) 351, 401, 407, 710, 813
HpyCH4III ACNGT 3 cut(s) 800, 1004, 1283
HpyCH4IV ACGT 2 cut(s) 759, 765
HpyF10VI GCNNNNNNNGC 3 cut(s) 830, 972, 1231
HpyF3I CTNAG 8 cut(s) 14, 66, 84, 459, 516, 678, 779, 807
HpySE526I ACGT 2 cut(s) 759, 765
Hsp92II CATG 7 cut(s) 352, 475, 644, 676, 848, 901, 1229
HspAI GCGC 1 cut(s) 524
Kzo9I GATC 5 cut(s) 49, 310, 487, 619, 889
LmnI GCTCC 5 cut(s) 331, 360, 486, 614, 655
Lsp1109I GCAGC 5 cut(s) 284, 490, 855, 883, 975
LweI GCATC 4 cut(s) 217, 284, 831, 1173
MaeI CTAG 2 cut(s) 788, 921
MaeII ACGT 2 cut(s) 759, 765
MaeIII GTNAC 2 cut(s) 124, 502
MalI GATC 5 cut(s) 51, 312, 489, 621, 891
MboI GATC 5 cut(s) 49, 310, 487, 619, 889
MboII GAAGA 8 cut(s) 54, 111, 152, 230, 737, 1153, 1156, 1180
MfeI CAATTG 1 cut(s) 1090
MflI RGATCY 1 cut(s) 889
MhlI GDGCHC 3 cut(s) 383, 652, 951
MluCI AATT 8 cut(s) 79, 368, 497, 555, 903, 1060, 1090, 1135
MlyI GAGTC 4 cut(s) 141, 154, 1106, 1281
MmeI TCCRAC 2 cut(s) 197, 677
Mph1103I ATGCAT 1 cut(s) 846
MroXI GAANNNNTTC 1 cut(s) 115
MseI TTAA 3 cut(s) 371, 387, 558
MslI CAYNNNNRTG 1 cut(s) 849
MspA1I CMGCKG 1 cut(s) 1308
MunI CAATTG 1 cut(s) 1090
MwoI GCNNNNNNNGC 3 cut(s) 830, 972, 1231
NdeI CATATG 2 cut(s) 954, 1257
NdeII GATC 5 cut(s) 49, 310, 487, 619, 889
NlaIII CATG 7 cut(s) 352, 475, 644, 676, 848, 901, 1229
NlaIV GGNNCC 2 cut(s) 651, 692
NmuCI GTSAC 1 cut(s) 124
NsiI ATGCAT 1 cut(s) 846
NspI RCATGY 2 cut(s) 676, 1229
NspV TTCGAA 1 cut(s) 1080
PagI TCATGA 1 cut(s) 471
PciI ACATGT 1 cut(s) 672
PdmI GAANNNNTTC 1 cut(s) 115
PfeI GAWTC 4 cut(s) 262, 316, 340, 862
PkrI GCNGC 5 cut(s) 274, 480, 870, 873, 965
PleI GAGTC 4 cut(s) 140, 154, 1105, 1281
PpsI GAGTC 4 cut(s) 140, 154, 1105, 1281
PpuMI RGGWCCY 2 cut(s) 416, 690
PscI ACATGT 1 cut(s) 672
PshAI GACNNNNGTC 1 cut(s) 131
PshBI ATTAAT 2 cut(s) 371, 558
Psp1406I AACGTT 1 cut(s) 759
Psp5II RGGWCCY 2 cut(s) 416, 690
PspN4I GGNNCC 2 cut(s) 651, 692
PspPI GGNCC 4 cut(s) 10, 219, 416, 690
PspPPI RGGWCCY 2 cut(s) 416, 690
PstI CTGCAG 1 cut(s) 873
PsuI RGATCY 1 cut(s) 889
PvuII CAGCTG 1 cut(s) 1308
RsaI GTAC 4 cut(s) 438, 971, 1206, 1280
RsaNI GTAC 4 cut(s) 437, 970, 1205, 1279
RseI CAYNNNNRTG 1 cut(s) 849
SaqAI TTAA 3 cut(s) 371, 387, 558
SatI GCNGC 5 cut(s) 273, 479, 869, 872, 964
Sau3AI GATC 5 cut(s) 49, 310, 487, 619, 889
Sau96I GGNCC 4 cut(s) 10, 219, 416, 690
ScaI AGTACT 2 cut(s) 438, 971
SchI GAGTC 4 cut(s) 141, 154, 1106, 1281
SduI GDGCHC 3 cut(s) 383, 652, 951
SfaNI GCATC 4 cut(s) 217, 284, 831, 1173
SfcI CTRYAG 2 cut(s) 869, 1178
SfuI TTCGAA 1 cut(s) 1080
SinI GGWCC 4 cut(s) 10, 219, 416, 690
SmiMI CAYNNNNRTG 1 cut(s) 849
Sse9I AATT 8 cut(s) 79, 368, 497, 555, 903, 1060, 1090, 1135
SsiI CCGC 1 cut(s) 581
SspI AATATT 2 cut(s) 168, 590
SspMI CTAG 2 cut(s) 788, 921
StyI CCWWGG 1 cut(s) 920
TaaI ACNGT 3 cut(s) 800, 1004, 1283
TaiI ACGT 2 cut(s) 762, 768
TaqI TCGA 4 cut(s) 52, 815, 913, 1080
TasI AATT 8 cut(s) 79, 368, 497, 555, 903, 1060, 1090, 1135
TatI WGTACW 2 cut(s) 436, 969
TfiI GAWTC 4 cut(s) 262, 316, 340, 862
Tru1I TTAA 3 cut(s) 371, 387, 558
Tru9I TTAA 3 cut(s) 371, 387, 558
TscAI CASTG 3 cut(s) 45, 129, 1050
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 5 cut(s) 272, 478, 868, 871, 963
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 9 cut(s) 209, 381, 460, 488, 725, 914, 971, 1008, 1244
TspRI CASTG 3 cut(s) 45, 129, 1050
VneI GTGCAC 1 cut(s) 947
VpaK11BI GGWCC 4 cut(s) 10, 219, 416, 690
VspI ATTAAT 2 cut(s) 371, 558
XapI RAATTY 4 cut(s) 79, 497, 903, 1135
XceI RCATGY 2 cut(s) 676, 1229
XmaJI CCTAGG 1 cut(s) 920
XmiI GTMKAC 2 cut(s) 393, 1285
XmnI GAANNNNTTC 1 cut(s) 115
XspI CTAG 2 cut(s) 788, 921
ZrmI AGTACT 2 cut(s) 438, 971
Zsp2I ATGCAT 1 cut(s) 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.