Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000698.1

Orthogroup ID

OG0003949

Physical Location & Seq

Genomic Coordinates Reverse (-)

256890 .. 257693

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000698.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgggacattgcctatgggtttataagggtttgggccactccatccattgccaattggtgttggatgtgaaccccagattactttatcatggtatcaaagcgaggttacccacgtgtgcatgtctaacggccacacgggctccacgtcacccaaagttgtccacatgtatgctgagcggggcccacgagcttcagttcaacaactgcgagagagacaaagaggcccaaatccacgggatcgagaccttgatctgcatcccaactttcgacggtgttcttgaaatcggttccttcggtttgatcagagagaactgggggttgatccagcaagccaagtcgttgttcgggtcagatcagcccgacctggaaacaagaccgctcgagttcattaaccggaacttctccatttttgacatcggcatcattgccgatgaaaagagcgccgaagaaatggggccagaaacccgggttaggctgagacaagccgctcaaccacgtggaggcggagcggcagcggcgggagaagctcacctcgcaagggcggcgttggaagcgagggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

187

Amino Acids

20.59

Weight (kDa)

6.45

Isoelectric Point (pI)

27.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06361
malus_domestica	MD08G1226000.v1.1
pyrus_communis	pycom05g24160
rosa_chinensis	RchiOBHm_Chr2g0159691 RchiOBHm_Chr2g0168161 RchiOBHm_Chr4g0433811 RchiOBHm_Chr5g0018671 RchiOBHm_Chr5g0082331
rosa_multiflora	Rmu_sc0000698.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019890 Rroxscaffold_1G00030050 Rroxscaffold_1G00032950 Rroxscaffold_5G00335810 Rroxscaffold_5G00345660 Rroxscaffold_5G00345670 Rroxscaffold_6G00401880 Rroxscaffold_6G00401890 Rroxscaffold_7G00194550
rosa_rugosa	Rorug04G0046200 Rorug04G0124800 Rorug04G0335500 Rorug04G0429300 Rorug05G0081300 Rorug05G0117900 Rorug05G0181600 Rorug05G0438900 Rorug05G0452900 Rorug05G0506200.1 Rorug06G0093700 Rorug06G0458300 Rorug07G0106200 Rorug07G0121100
rosa_samantha	Rh2DG566900 Rh3CG025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	24
AccBSI	CCGCTC	4 cut(s)	177, 379, 488, 509
AciI	CCGC	8 cut(s)	177, 377, 486, 504, 509, 515, 518, 542
AclWI	GGATC	2 cut(s)	245, 316
AcoI	YGGCCR	1 cut(s)	129
AcuI	CTGAAG	1 cut(s)	176
AcvI	CACGTG	2 cut(s)	114, 497
AfiI	CCNNNNNNNGG	3 cut(s)	471, 500, 538
AflIII	ACRYGT	2 cut(s)	113, 164
AgsI	TTSAA	2 cut(s)	199, 281
AjiI	CACGTC	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	363
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AluBI	AGCT	2 cut(s)	190, 527
AluI	AGCT	2 cut(s)	190, 527
Alw26I	GTCTC	3 cut(s)	207, 236, 472
AlwI	GGATC	2 cut(s)	245, 316
Ama87I	CYCGRG	2 cut(s)	380, 465
AoxI	GGCC	5 cut(s)	34, 129, 180, 222, 455
ApaI	GGGCCC	1 cut(s)	184
ApeKI	GCWGC	1 cut(s)	512
AspLEI	GCGC	1 cut(s)	443
AspS9I	GGNCC	5 cut(s)	34, 180, 181, 223, 455
AsuC2I	CCSGG	2 cut(s)	466, 467
AsuHPI	GGTGA	2 cut(s)	140, 521
AvaI	CYCGRG	2 cut(s)	380, 465
BaeGI	GKGCMC	1 cut(s)	184
BanII	GRGCYC	2 cut(s)	142, 184
BauI	CACGAG	1 cut(s)	185
BbrPI	CACGTG	2 cut(s)	114, 497
BbvI	GCAGC	1 cut(s)	524
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	1 cut(s)	144
BciT130I	CCWGG	1 cut(s)	365
BclI	TGATCA	1 cut(s)	300
BcnI	CCSGG	2 cut(s)	466, 467
BcoDI	GTCTC	3 cut(s)	207, 236, 472
BfoI	RGCGCY	1 cut(s)	444
BglI	GCCNNNNNGGC	1 cut(s)	137
BisI	GCNGC	5 cut(s)	486, 510, 513, 516, 543
BlpI	GCTNAGC	1 cut(s)	173
BlsI	GCNGC	5 cut(s)	487, 511, 514, 517, 544
Bme1390I	CCNGG	3 cut(s)	365, 466, 467
BmeT110I	CYCGRG	2 cut(s)	380, 465
BmgBI	CACGTC	1 cut(s)	146
BmgT120I	GGNCC	5 cut(s)	34, 180, 181, 223, 455
BmiI	GGNNCC	5 cut(s)	141, 181, 182, 289, 456
BmrFI	CCNGG	3 cut(s)	365, 466, 467
BmrI	ACTGGG	1 cut(s)	322
BmsI	GCATC	2 cut(s)	264, 429
BmuI	ACTGGG	1 cut(s)	322
Bpu1102I	GCTNAGC	1 cut(s)	173
BpuMI	CCSGG	2 cut(s)	466, 467
BsaAI	YACGTR	2 cut(s)	114, 497
BsaBI	GATNNNNATC	1 cut(s)	254
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	232, 465
BsaWI	WCCGGW	1 cut(s)	393
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	3 cut(s)	471, 500, 538
Bse1I	ACTGG	1 cut(s)	317
Bse3DI	GCAATG	3 cut(s)	7, 46, 423
Bse8I	GATNNNNATC	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	365
BseDI	CCNNGG	2 cut(s)	232, 465
BseGI	GGATG	3 cut(s)	42, 70, 255
BseJI	GATNNNNATC	1 cut(s)	254
BseLI	CCNNNNNNNGG	3 cut(s)	471, 500, 538
BseMI	GCAATG	3 cut(s)	7, 46, 423
BseMII	CTCAG	2 cut(s)	164, 467
BseNI	ACTGG	1 cut(s)	317
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	524
BshFI	GGCC	5 cut(s)	36, 131, 182, 224, 457
BsiHKCI	CYCGRG	2 cut(s)	380, 465
BsiSI	CCGG	2 cut(s)	394, 466
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	3 cut(s)	471, 500, 538
BsmAI	GTCTC	3 cut(s)	207, 236, 472
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	5 cut(s)	36, 131, 182, 224, 457
Bso31I	GGTCTC	1 cut(s)	236
BsoBI	CYCGRG	2 cut(s)	380, 465
Bsp120I	GGGCCC	1 cut(s)	180
Bsp1286I	GDGCHC	2 cut(s)	142, 184
Bsp143I	GATC	5 cut(s)	237, 249, 300, 321, 352
Bsp1720I	GCTNAGC	1 cut(s)	173
BspACI	CCGC	8 cut(s)	177, 377, 486, 504, 509, 515, 518, 542
BspANI	GGCC	5 cut(s)	36, 131, 182, 224, 457
BspCNI	CTCAG	2 cut(s)	165, 468
BspLI	GGNNCC	5 cut(s)	141, 181, 182, 289, 456
BspPI	GGATC	2 cut(s)	245, 316
BspTNI	GGTCTC	1 cut(s)	236
BsrBI	CCGCTC	4 cut(s)	177, 379, 488, 509
BsrDI	GCAATG	3 cut(s)	7, 46, 423
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	2 cut(s)	232, 465
BssMI	GATC	5 cut(s)	237, 249, 300, 321, 352
BssSI	CACGAG	1 cut(s)	185
Bst2BI	CACGAG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	365
Bst4CI	ACNGT	1 cut(s)	272
BstBAI	YACGTR	2 cut(s)	114, 497
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	2 cut(s)	173, 476
BstDSI	CCRYGG	1 cut(s)	232
BstEII	GGTNACC	1 cut(s)	105
BstF5I	GGATG	3 cut(s)	42, 70, 255
BstH2I	RGCGCY	1 cut(s)	444
BstHHI	GCGC	1 cut(s)	443
BstKTI	GATC	5 cut(s)	240, 252, 303, 324, 355
BstMAI	GTCTC	3 cut(s)	207, 236, 472
BstMBI	GATC	5 cut(s)	237, 249, 300, 321, 352
BstMWI	GCNNNNNNNGC	6 cut(s)	137, 515, 524, 533, 542, 551
BstNI	CCWGG	1 cut(s)	365
BstNSI	RCATGY	2 cut(s)	123, 168
BstPI	GGTNACC	1 cut(s)	105
BstSCI	CCNGG	3 cut(s)	363, 464, 465
BstSLI	GKGCMC	1 cut(s)	184
BstV1I	GCAGC	1 cut(s)	524
BsuRI	GGCC	5 cut(s)	36, 131, 182, 224, 457
BtgI	CCRYGG	1 cut(s)	232
BtrI	CACGTC	1 cut(s)	146
BtsCI	GGATG	3 cut(s)	42, 70, 255
Cac8I	GCNNGC	1 cut(s)	330
CfoI	GCGC	1 cut(s)	443
Cfr13I	GGNCC	5 cut(s)	34, 180, 181, 223, 455
Cfr9I	CCCGGG	1 cut(s)	465
CviAII	CATG	3 cut(s)	89, 120, 165
DdeI	CTNAG	2 cut(s)	173, 476
DpnI	GATC	5 cut(s)	239, 251, 302, 323, 354
DpnII	GATC	5 cut(s)	237, 249, 300, 321, 352
EaeI	YGGCCR	1 cut(s)	129
EciI	GGCGGA	1 cut(s)	519
Eco24I	GRGCYC	2 cut(s)	142, 184
Eco31I	GGTCTC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	176
Eco72I	CACGTG	2 cut(s)	114, 497
Eco88I	CYCGRG	2 cut(s)	380, 465
Eco91I	GGTNACC	1 cut(s)	105
EcoO109I	RGGNCCY	1 cut(s)	180
EcoO65I	GGTNACC	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	363
EcoT38I	GRGCYC	2 cut(s)	142, 184
FaeI	CATG	3 cut(s)	92, 123, 168
FaiI	YATR	6 cut(s)	16, 24, 90, 121, 166, 170
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	3 cut(s)	88, 119, 164
FauI	CCCGC	2 cut(s)	170, 511
FbaI	TGATCA	1 cut(s)	300
Fnu4HI	GCNGC	5 cut(s)	486, 510, 513, 516, 543
FokI	GGATG	3 cut(s)	29, 77, 242
FriOI	GRGCYC	2 cut(s)	142, 184
Fsp4HI	GCNGC	5 cut(s)	486, 510, 513, 516, 543
GlaI	GCGC	1 cut(s)	442
GluI	GCNGC	5 cut(s)	486, 510, 513, 516, 543
HaeII	RGCGCY	1 cut(s)	444
HaeIII	GGCC	5 cut(s)	36, 131, 182, 224, 457
HapII	CCGG	2 cut(s)	394, 466
HhaI	GCGC	1 cut(s)	443
Hin1II	CATG	3 cut(s)	92, 123, 168
Hin6I	GCGC	1 cut(s)	441
HinP1I	GCGC	1 cut(s)	441
HpaII	CCGG	2 cut(s)	394, 466
HphI	GGTGA	2 cut(s)	140, 521
Hpy166II	GTNNAC	2 cut(s)	70, 162
Hpy188I	TCNGA	2 cut(s)	305, 352
Hpy188III	TCNNGA	2 cut(s)	241, 278
Hpy8I	GTNNAC	2 cut(s)	70, 162
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4IV	ACGT	3 cut(s)	113, 145, 496
HpyCH4V	TGCA	2 cut(s)	119, 255
HpyF10VI	GCNNNNNNNGC	6 cut(s)	137, 515, 524, 533, 542, 551
HpyF3I	CTNAG	2 cut(s)	173, 476
HpySE526I	ACGT	3 cut(s)	113, 145, 496
Hsp92II	CATG	3 cut(s)	92, 123, 168
HspAI	GCGC	1 cut(s)	441
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	5 cut(s)	237, 249, 300, 321, 352
LmnI	GCTCC	2 cut(s)	145, 506
LpnPI	CCDG	8 cut(s)	88, 298, 338, 350, 377, 407, 471, 479
Lsp1109I	GCAGC	1 cut(s)	524
LweI	GCATC	2 cut(s)	264, 429
MaeII	ACGT	3 cut(s)	113, 145, 496
MaeIII	GTNAC	2 cut(s)	105, 146
MalI	GATC	5 cut(s)	239, 251, 302, 323, 354
MbiI	CCGCTC	4 cut(s)	177, 379, 488, 509
MboI	GATC	5 cut(s)	237, 249, 300, 321, 352
MboII	GAAGA	1 cut(s)	458
MfeI	CAATTG	1 cut(s)	53
MhlI	GDGCHC	2 cut(s)	142, 184
MluCI	AATT	1 cut(s)	53
MmeI	TCCRAC	2 cut(s)	42, 528
MnlI	CCTC	5 cut(s)	96, 214, 494, 542, 549
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	2 cut(s)	394, 466
MspR9I	CCNGG	3 cut(s)	365, 466, 467
MunI	CAATTG	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	6 cut(s)	137, 515, 524, 533, 542, 551
NciI	CCSGG	2 cut(s)	466, 467
NdeII	GATC	5 cut(s)	237, 249, 300, 321, 352
NlaIII	CATG	3 cut(s)	92, 123, 168
NlaIV	GGNNCC	5 cut(s)	141, 181, 182, 289, 456
NmuCI	GTSAC	1 cut(s)	146
NspI	RCATGY	2 cut(s)	123, 168
PaeR7I	CTCGAG	1 cut(s)	380
PciI	ACATGT	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PkrI	GCNGC	5 cut(s)	487, 511, 514, 517, 544
PmaCI	CACGTG	2 cut(s)	114, 497
PmlI	CACGTG	2 cut(s)	114, 497
Ppu21I	YACGTR	2 cut(s)	114, 497
PscI	ACATGT	1 cut(s)	164
PsiI	TTATAA	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	363
PspCI	CACGTG	2 cut(s)	114, 497
PspEI	GGTNACC	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	5 cut(s)	141, 181, 182, 289, 456
PspOMI	GGGCCC	1 cut(s)	180
PspPI	GGNCC	5 cut(s)	34, 180, 181, 223, 455
PspXI	VCTCGAGB	1 cut(s)	380
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	5 cut(s)	486, 510, 513, 516, 543
Sau3AI	GATC	5 cut(s)	237, 249, 300, 321, 352
Sau96I	GGNCC	5 cut(s)	34, 180, 181, 223, 455
ScrFI	CCNGG	3 cut(s)	365, 466, 467
SduI	GDGCHC	2 cut(s)	142, 184
SetI	ASST	9 cut(s)	107, 116, 148, 192, 248, 366, 499, 529, 534
SfaNI	GCATC	2 cut(s)	264, 429
Sfr274I	CTCGAG	1 cut(s)	380
SlaI	CTCGAG	1 cut(s)	380
SmaI	CCCGGG	1 cut(s)	467
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	8 cut(s)	177, 377, 486, 504, 509, 515, 518, 542
StyD4I	CCNGG	3 cut(s)	363, 464, 465
TaaI	ACNGT	1 cut(s)	272
TaiI	ACGT	3 cut(s)	116, 148, 499
TaqI	TCGA	3 cut(s)	240, 267, 381
TasI	AATT	1 cut(s)	53
TauI	GCSGC	4 cut(s)	488, 512, 518, 545
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	1 cut(s)	512
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	2 cut(s)	376, 447
TspMI	CCCGGG	1 cut(s)	465
XceI	RCATGY	2 cut(s)	123, 168
XhoI	CTCGAG	1 cut(s)	380
XmaI	CCCGGG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.