Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003949

Physical Location & Seq

Genomic Coordinates Forward (+)

36477998 .. 36481870

Gene Structure 3873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00194550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAATGGCCAAGGGCTTTGTGGTTGTGAATTGAGAATCTTCGGTGTTTCACAAATCGGGATGGTGGATCAAAAGGGACTTTACGGATGTGATCTTGGAAGTGTGATGTTAGAATCCAATGTCAATCTTTACGGCACAAAGAAGAGGAAAGGAGGGGCTCGAGCTGCGCGGAAGGAACTTTTGGGTGAAAGAGAGAGAAGGGCTTACATGCAGGTCTGCATTGGTGGAATTCACGGCCATCGGTTCGAACCCGAGTTGACGTCGTCGTTTCGGAAGATGAGTGACTTGGCTTTCCGGGTTGTGGAGGACGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010035 GO:0010038 GO:0010043 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

105

Amino Acids

11.69

Weight (kDa)

8.41

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06361
malus_domestica	MD08G1226000.v1.1
pyrus_communis	pycom05g24160
rosa_chinensis	RchiOBHm_Chr2g0159691 RchiOBHm_Chr2g0168161 RchiOBHm_Chr4g0433811 RchiOBHm_Chr5g0018671 RchiOBHm_Chr5g0082331
rosa_multiflora	Rmu_sc0000698.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019890 Rroxscaffold_1G00030050 Rroxscaffold_1G00032950 Rroxscaffold_5G00335810 Rroxscaffold_5G00345660 Rroxscaffold_5G00345670 Rroxscaffold_6G00401880 Rroxscaffold_6G00401890 Rroxscaffold_7G00194550
rosa_rugosa	Rorug04G0046200 Rorug04G0124800 Rorug04G0335500 Rorug04G0429300 Rorug05G0081300 Rorug05G0117900 Rorug05G0181600 Rorug05G0438900 Rorug05G0452900 Rorug05G0506200.1 Rorug06G0093700 Rorug06G0458300 Rorug07G0106200 Rorug07G0121100
rosa_samantha	Rh2DG566900 Rh3CG025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	263
Acc36I	ACCTGC	1 cut(s)	202
AccII	CGCG	1 cut(s)	169
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	1 cut(s)	75
AcoI	YGGCCR	2 cut(s)	7, 235
AcsI	RAATTY	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	260
AfiI	CCNNNNNNNGG	1 cut(s)	301
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
AlwI	GGATC	1 cut(s)	75
Ama87I	CYCGRG	2 cut(s)	159, 251
AoxI	GGCC	2 cut(s)	7, 235
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	169
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	197
AsuII	TTCGAA	1 cut(s)	246
AvaI	CYCGRG	2 cut(s)	159, 251
BalI	TGGCCA	1 cut(s)	9
BanII	GRGCYC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	2 cut(s)	55, 246
BceAI	ACGGC	2 cut(s)	148, 250
BcnI	CCSGG	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
Bme1390I	CCNGG	1 cut(s)	296
BmeT110I	CYCGRG	2 cut(s)	159, 251
BmrFI	CCNGG	1 cut(s)	296
Bpu14I	TTCGAA	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	2 cut(s)	66, 92
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseXI	GCAGC	1 cut(s)	151
Bsh1236I	CGCG	1 cut(s)	169
BshFI	GGCC	2 cut(s)	9, 237
BsiHKCI	CYCGRG	2 cut(s)	159, 251
BsiSI	CCGG	1 cut(s)	295
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	90
BsnI	GGCC	2 cut(s)	9, 237
BsoBI	CYCGRG	2 cut(s)	159, 251
Bsp119I	TTCGAA	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	67, 91
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	2 cut(s)	9, 237
BspFNI	CGCG	1 cut(s)	169
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	75
BspT104I	TTCGAA	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	2 cut(s)	67, 91
BssNI	GRCGYC	1 cut(s)	260
BssT1I	CCWWGG	1 cut(s)	10
Bst6I	CTCTTC	2 cut(s)	137, 306
BstACI	GRCGYC	1 cut(s)	260
BstBI	TTCGAA	1 cut(s)	246
BstF5I	GGATG	2 cut(s)	66, 92
BstFNI	CGCG	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	2 cut(s)	70, 94
BstMBI	GATC	2 cut(s)	67, 91
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	294
BstUI	CGCG	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	151
BsuRI	GGCC	2 cut(s)	9, 237
BtsCI	GGATG	2 cut(s)	66, 92
BveI	ACCTGC	1 cut(s)	202
CfoI	GCGC	1 cut(s)	169
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	7 cut(s)	9, 16, 158, 164, 203, 237, 290
CviKI_1	RGCY	7 cut(s)	9, 16, 158, 164, 203, 237, 290
DpnI	GATC	2 cut(s)	69, 93
DpnII	GATC	2 cut(s)	67, 91
EaeI	YGGCCR	2 cut(s)	7, 235
Eam1104I	CTCTTC	2 cut(s)	137, 306
EarI	CTCTTC	2 cut(s)	137, 306
Eco130I	CCWWGG	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	160
Eco88I	CYCGRG	2 cut(s)	159, 251
EcoRI	GAATTC	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	1 cut(s)	211
FaiI	YATR	1 cut(s)	209
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	1 cut(s)	207
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	2 cut(s)	73, 99
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	165
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	9, 237
HapII	CCGG	1 cut(s)	295
HhaI	GCGC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	260
Hin1II	CATG	1 cut(s)	211
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HinfI	GANTC	2 cut(s)	36, 113
HpaII	CCGG	1 cut(s)	295
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188I	TCNGA	1 cut(s)	273
Hpy188III	TCNNGA	1 cut(s)	58
Hpy8I	GTNNAC	1 cut(s)	258
Hpy99I	CGWCG	2 cut(s)	265, 268
HpyAV	CCTTC	2 cut(s)	166, 192
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	2 cut(s)	211, 219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpySE526I	ACGT	1 cut(s)	260
Hsp92I	GRCGYC	1 cut(s)	260
Hsp92II	CATG	1 cut(s)	211
HspAI	GCGC	1 cut(s)	167
Kzo9I	GATC	2 cut(s)	67, 91
LpnPI	CCDG	2 cut(s)	197, 308
Lsp1109I	GCAGC	1 cut(s)	151
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	2 cut(s)	69, 93
MboI	GATC	2 cut(s)	67, 91
MboII	GAAGA	3 cut(s)	31, 154, 286
MhlI	GDGCHC	1 cut(s)	160
MlsI	TGGCCA	1 cut(s)	9
MluCI	AATT	2 cut(s)	29, 228
MluNI	TGGCCA	1 cut(s)	9
MnlI	CCTC	3 cut(s)	138, 146, 298
Mox20I	TGGCCA	1 cut(s)	9
MscI	TGGCCA	1 cut(s)	9
Msp20I	TGGCCA	1 cut(s)	9
MspI	CCGG	1 cut(s)	295
MspR9I	CCNGG	1 cut(s)	296
MvnI	CGCG	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	164
NciI	CCSGG	1 cut(s)	296
NdeII	GATC	2 cut(s)	67, 91
NlaIII	CATG	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	281
NspI	RCATGY	1 cut(s)	211
NspV	TTCGAA	1 cut(s)	246
PaeR7I	CTCGAG	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	36, 113
PflFI	GACNNNGTC	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	166
PspXI	VCTCGAGB	1 cut(s)	159
PsyI	GACNNNGTC	1 cut(s)	262
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	2 cut(s)	67, 91
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	3 cut(s)	166, 216, 263
Sfr274I	CTCGAG	1 cut(s)	159
SfuI	TTCGAA	1 cut(s)	246
SlaI	CTCGAG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	159
SmoI	CTYRAG	1 cut(s)	159
Sse9I	AATT	2 cut(s)	29, 228
SsiI	CCGC	1 cut(s)	169
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	10
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	2 cut(s)	160, 246
TasI	AATT	2 cut(s)	29, 228
TfiI	GAWTC	2 cut(s)	36, 113
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	99
Tth111I	GACNNNGTC	1 cut(s)	262
XapI	RAATTY	1 cut(s)	228
XceI	RCATGY	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	17
XhoI	CTCGAG	1 cut(s)	159
ZraI	GACGTC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.