Rroxscaffold_1G00019890

Transmembrane protein 97-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003949
Physical Location & Seq
Forward (+)
24296780 .. 24297097
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00019890.1

Sequence Viewer

Length: 318 bp
ATGGCGACGGCACCCATGGTGGACGCGCAGCTAGTTCTGCCTCCGAGCCTCTTTCCGGAGTGGATGGTGGAGTACAAGAAGCGTGGCCTCTTGCCCTCGCTAACTTGTATGGGATGTTGGCCGGAAAGTTGTGGTACAACACCACTTGCTTGGTCTATGGCGCGTCATTCTTCACCACAATGGGATTCGGACTGGAGTAAGCGGAACTGGAACTTTGTTTCGAAGTGCTGGTTTGGCGAGTTCTTGAACGAGGCCAAGCCTTCGTGGAGGATGGGGTGCATCCACAGAAATTTGAGCGGGGAGTTATCGAACCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2781

Protein Analysis

105

Amino Acids

12.09

Weight (kDa)

8.35

Isoelectric Point (pI)

57.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 10
AccBSI CCGCTC 1 cut(s) 297
AccII CGCG 2 cut(s) 26, 163
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 3 cut(s) 202, 297, 313
AcoI YGGCCR 1 cut(s) 119
AcsI RAATTY 1 cut(s) 289
AfaI GTAC 2 cut(s) 74, 136
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 1 cut(s) 247
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Aor13HI TCCGGA 1 cut(s) 55
AoxI GGCC 3 cut(s) 85, 119, 252
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 1 cut(s) 289
AspLEI GCGC 2 cut(s) 28, 163
AsuHPI GGTGA 1 cut(s) 165
AsuII TTCGAA 1 cut(s) 221
BanI GGYRCC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 40
BccI CCATC 2 cut(s) 58, 265
BceAI ACGGC 1 cut(s) 24
BfaI CTAG 2 cut(s) 32, 316
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
BmiI GGNNCC 1 cut(s) 12
BmsI GCATC 1 cut(s) 288
BpmI CTGGAG 1 cut(s) 214
Bpu14I TTCGAA 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 15
BsaWI WCCGGW 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 2 cut(s) 197, 212
BseAI TCCGGA 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 4 cut(s) 69, 119, 276, 279
BseLI CCNNNNNNNGG 1 cut(s) 55
BseNI ACTGG 2 cut(s) 197, 212
BseXI GCAGC 1 cut(s) 40
Bsh1236I CGCG 2 cut(s) 26, 163
BshFI GGCC 3 cut(s) 87, 121, 254
BshNI GGYRCC 1 cut(s) 10
BsiSI CCGG 2 cut(s) 56, 122
BslI CCNNNNNNNGG 1 cut(s) 55
BsnI GGCC 3 cut(s) 87, 121, 254
Bsp119I TTCGAA 1 cut(s) 221
Bsp13I TCCGGA 1 cut(s) 55
Bsp19I CCATGG 1 cut(s) 15
BspACI CCGC 3 cut(s) 202, 297, 313
BspANI GGCC 3 cut(s) 87, 121, 254
BspEI TCCGGA 1 cut(s) 55
BspFNI CGCG 2 cut(s) 26, 163
BspLI GGNNCC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 221
BspT107I GGYRCC 1 cut(s) 10
BsrBI CCGCTC 1 cut(s) 297
BsrI ACTGG 2 cut(s) 197, 212
BssECI CCNNGG 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 15
BstBI TTCGAA 1 cut(s) 221
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 4 cut(s) 69, 119, 276, 279
BstFNI CGCG 2 cut(s) 26, 163
BstHHI GCGC 2 cut(s) 28, 163
BstMWI GCNNNNNNNGC 2 cut(s) 37, 234
BstUI CGCG 2 cut(s) 26, 163
BstV1I GCAGC 1 cut(s) 40
BstXI CCANNNNNNTGG 1 cut(s) 150
BsuRI GGCC 3 cut(s) 87, 121, 254
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 4 cut(s) 69, 119, 276, 279
CfoI GCGC 2 cut(s) 28, 163
CseI GACGC 2 cut(s) 32, 152
Csp6I GTAC 2 cut(s) 73, 135
CspCI CAANNNNNGTGG 2 cut(s) 64, 99
CviAII CATG 1 cut(s) 16
CviJI RGCY 6 cut(s) 31, 48, 87, 121, 254, 259
CviKI_1 RGCY 6 cut(s) 31, 48, 87, 121, 254, 259
CviQI GTAC 2 cut(s) 73, 135
EaeI YGGCCR 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 1 cut(s) 19
FaiI YATR 3 cut(s) 17, 110, 158
FatI CATG 1 cut(s) 15
FauI CCCGC 1 cut(s) 290
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 4 cut(s) 76, 126, 266, 283
Fsp4HI GCNGC 1 cut(s) 29
FspBI CTAG 2 cut(s) 32, 316
GlaI GCGC 2 cut(s) 27, 162
GluI GCNGC 1 cut(s) 29
GsuI CTGGAG 1 cut(s) 214
HaeIII GGCC 3 cut(s) 87, 121, 254
HapII CCGG 2 cut(s) 56, 122
HgaI GACGC 2 cut(s) 32, 152
HhaI GCGC 2 cut(s) 28, 163
Hin1II CATG 1 cut(s) 19
Hin6I GCGC 2 cut(s) 26, 161
HinP1I GCGC 2 cut(s) 26, 161
HinfI GANTC 1 cut(s) 185
HpaII CCGG 2 cut(s) 56, 122
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 2 cut(s) 45, 190
Hpy188III TCNNGA 2 cut(s) 56, 244
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 270
HpyCH4V TGCA 1 cut(s) 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 234
Hsp92II CATG 1 cut(s) 19
HspAI GCGC 2 cut(s) 26, 161
Kpn2I TCCGGA 1 cut(s) 55
LpnPI CCDG 5 cut(s) 69, 135, 178, 193, 214
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 1 cut(s) 288
MaeI CTAG 2 cut(s) 32, 316
MbiI CCGCTC 1 cut(s) 297
MboII GAAGA 1 cut(s) 162
MluCI AATT 1 cut(s) 289
MnlI CCTC 6 cut(s) 51, 59, 98, 106, 244, 261
MroI TCCGGA 1 cut(s) 55
MslI CAYNNNNRTG 1 cut(s) 178
MspI CCGG 2 cut(s) 56, 122
MvnI CGCG 2 cut(s) 26, 163
MwoI GCNNNNNNNGC 2 cut(s) 37, 234
NcoI CCATGG 1 cut(s) 15
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 1 cut(s) 12
NspV TTCGAA 1 cut(s) 221
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 12
RsaI GTAC 2 cut(s) 74, 136
RsaNI GTAC 2 cut(s) 73, 135
RseI CAYNNNNRTG 1 cut(s) 178
SatI GCNGC 1 cut(s) 29
SetI ASST 1 cut(s) 33
SfaNI GCATC 1 cut(s) 288
SfuI TTCGAA 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 178
Sse9I AATT 1 cut(s) 289
SsiI CCGC 3 cut(s) 202, 297, 313
SspMI CTAG 2 cut(s) 32, 316
StyI CCWWGG 1 cut(s) 15
TaqI TCGA 2 cut(s) 221, 308
TasI AATT 1 cut(s) 289
TatI WGTACW 1 cut(s) 72
TfiI GAWTC 1 cut(s) 185
TseI GCWGC 1 cut(s) 28
XapI RAATTY 1 cut(s) 289
XspI CTAG 2 cut(s) 32, 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.