Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003949

Physical Location & Seq

Genomic Coordinates Reverse (-)

57795900 .. 57796295

Gene Structure 396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40228

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGAAAAAATTGGACGTTGCCTATGGGTTTATAAGGGTTTGGGCCACTCCATCTATTGTCAATTGGTTTTGGATGTGAACCCAAAATTACTTTATCATGGTATCAAAGTCAGATTACCCACGTGTGCATGCTTAACGGTCACACGGGCTTCACGTCACCTAAGTTGTCCGCGTGCGGGGAAGAAGAAGGAAGTTATGGCGTCTACCGGAAACAAAATGCATGATCTTTTGTCTTATTTGATTGCTACGGCAGACCCGGTTACCGGAAGGTTCATGCCGGAGAATGAAATTGCTAATAAAATTATGGGGACTGTGGCCGCTTCGTTCAACTCTCCAGCTATGACTACTACTTTTATCGAGAAGTTCCTGGGCGAAAGACCTGACATGCATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

131

Amino Acids

14.57

Weight (kDa)

9.35

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06361
malus_domestica	MD08G1226000.v1.1
pyrus_communis	pycom05g24160
rosa_chinensis	RchiOBHm_Chr2g0159691 RchiOBHm_Chr2g0168161 RchiOBHm_Chr4g0433811 RchiOBHm_Chr5g0018671 RchiOBHm_Chr5g0082331
rosa_multiflora	Rmu_sc0000698.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019890 Rroxscaffold_1G00030050 Rroxscaffold_1G00032950 Rroxscaffold_5G00335810 Rroxscaffold_5G00345660 Rroxscaffold_5G00345670 Rroxscaffold_6G00401880 Rroxscaffold_6G00401890 Rroxscaffold_7G00194550
rosa_rugosa	Rorug04G0046200 Rorug04G0124800 Rorug04G0335500 Rorug04G0429300 Rorug05G0081300 Rorug05G0117900 Rorug05G0181600 Rorug05G0438900 Rorug05G0452900 Rorug05G0506200.1 Rorug06G0093700 Rorug06G0458300 Rorug07G0106200 Rorug07G0121100
rosa_samantha	Rh2DG566900 Rh3CG025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	33
AccI	GTMKAC	1 cut(s)	203
AccII	CGCG	1 cut(s)	172
AciI	CCGC	3 cut(s)	170, 176, 318
AcoI	YGGCCR	1 cut(s)	315
AcvI	CACGTG	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	200
AfiI	CCNNNNNNNGG	2 cut(s)	176, 263
AflIII	ACRYGT	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	328
AjiI	CACGTC	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	1 cut(s)	338
AluI	AGCT	1 cut(s)	338
AoxI	GGCC	2 cut(s)	43, 315
AspS9I	GGNCC	1 cut(s)	43
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	149
BbrPI	CACGTG	1 cut(s)	123
BccI	CCATC	1 cut(s)	59
BceAI	ACGGC	1 cut(s)	264
BciT130I	CCWGG	1 cut(s)	368
BcnI	CCSGG	1 cut(s)	257
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
Bme1390I	CCNGG	2 cut(s)	257, 368
BmgBI	CACGTC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	43
BmrFI	CCNGG	2 cut(s)	257, 368
BpmI	CTGGAG	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	257
BsaAI	YACGTR	1 cut(s)	123
BsaHI	GRCGYC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	367
BsaWI	WCCGGW	2 cut(s)	206, 263
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 263
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	2 cut(s)	176, 263
Bsh1236I	CGCG	1 cut(s)	172
BshFI	GGCC	2 cut(s)	45, 317
BsiSI	CCGG	4 cut(s)	207, 257, 264, 278
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	2 cut(s)	176, 263
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	45, 317
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	3 cut(s)	170, 176, 318
BspANI	GGCC	2 cut(s)	45, 317
BspFNI	CGCG	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	1 cut(s)	223
BssNI	GRCGYC	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	2 cut(s)	139, 313
BstACI	GRCGYC	1 cut(s)	200
BstBAI	YACGTR	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	130, 174
BstDEI	CTNAG	1 cut(s)	161
BstEII	GGTNACC	1 cut(s)	259
BstF5I	GGATG	1 cut(s)	79
BstFNI	CGCG	1 cut(s)	172
BstKTI	GATC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	223
BstNI	CCWGG	1 cut(s)	368
BstNSI	RCATGY	2 cut(s)	132, 388
BstPI	GGTNACC	1 cut(s)	259
BstSCI	CCNGG	2 cut(s)	255, 366
BstUI	CGCG	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	45, 317
BtrI	CACGTC	1 cut(s)	155
BtsCI	GGATG	1 cut(s)	79
Cac8I	GCNNGC	2 cut(s)	130, 174
Cfr13I	GGNCC	1 cut(s)	43
CseI	GACGC	1 cut(s)	189
CviAII	CATG	5 cut(s)	98, 129, 221, 274, 385
CviJI	RGCY	4 cut(s)	45, 149, 317, 338
CviKI_1	RGCY	4 cut(s)	45, 149, 317, 338
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
EaeI	YGGCCR	1 cut(s)	315
Eco72I	CACGTG	1 cut(s)	123
Eco91I	GGTNACC	1 cut(s)	259
EcoO65I	GGTNACC	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	366
EcoT22I	ATGCAT	2 cut(s)	222, 390
FaeI	CATG	5 cut(s)	101, 132, 224, 277, 388
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	5 cut(s)	97, 128, 220, 273, 384
FauI	CCCGC	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	203
Fnu4HI	GCNGC	1 cut(s)	318
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	318
GluI	GCNGC	1 cut(s)	318
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	2 cut(s)	45, 317
HapII	CCGG	4 cut(s)	207, 257, 264, 278
HgaI	GACGC	1 cut(s)	189
Hin1I	GRCGYC	1 cut(s)	200
Hin1II	CATG	5 cut(s)	101, 132, 224, 277, 388
HpaII	CCGG	4 cut(s)	207, 257, 264, 278
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	2 cut(s)	79, 204
Hpy188I	TCNGA	1 cut(s)	113
Hpy188III	TCNNGA	1 cut(s)	358
Hpy8I	GTNNAC	2 cut(s)	79, 204
HpyAV	CCTTC	2 cut(s)	181, 261
HpyCH4III	ACNGT	2 cut(s)	139, 313
HpyCH4IV	ACGT	3 cut(s)	16, 122, 154
HpyCH4V	TGCA	3 cut(s)	128, 220, 388
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	3 cut(s)	16, 122, 154
Hsp92I	GRCGYC	1 cut(s)	200
Hsp92II	CATG	5 cut(s)	101, 132, 224, 277, 388
Kzo9I	GATC	1 cut(s)	223
LpnPI	CCDG	7 cut(s)	220, 270, 277, 291, 348, 353, 380
MaeII	ACGT	3 cut(s)	16, 122, 154
MaeIII	GTNAC	3 cut(s)	139, 155, 259
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	2 cut(s)	193, 196
MfeI	CAATTG	1 cut(s)	62
MluCI	AATT	5 cut(s)	9, 62, 86, 288, 300
Mph1103I	ATGCAT	2 cut(s)	222, 390
MseI	TTAA	1 cut(s)	134
MspI	CCGG	4 cut(s)	207, 257, 264, 278
MspR9I	CCNGG	2 cut(s)	257, 368
MunI	CAATTG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	368
MvnI	CGCG	1 cut(s)	172
NciI	CCSGG	1 cut(s)	257
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	5 cut(s)	101, 132, 224, 277, 388
NmuCI	GTSAC	2 cut(s)	139, 155
NsiI	ATGCAT	2 cut(s)	222, 390
NspI	RCATGY	2 cut(s)	132, 388
PaeI	GCATGC	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	319
PmaCI	CACGTG	1 cut(s)	123
PmlI	CACGTG	1 cut(s)	123
Ppu21I	YACGTR	1 cut(s)	123
PsiI	TTATAA	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	366
PspCI	CACGTG	1 cut(s)	123
PspEI	GGTNACC	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	366
PspPI	GGNCC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	1 cut(s)	318
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	1 cut(s)	43
ScrFI	CCNGG	2 cut(s)	257, 368
SetI	ASST	7 cut(s)	19, 125, 157, 162, 272, 340, 382
SphI	GCATGC	1 cut(s)	132
Sse9I	AATT	5 cut(s)	9, 62, 86, 288, 300
SsiI	CCGC	3 cut(s)	170, 176, 318
StyD4I	CCNGG	2 cut(s)	255, 366
TaaI	ACNGT	2 cut(s)	139, 313
TaiI	ACGT	3 cut(s)	19, 125, 157
TaqI	TCGA	1 cut(s)	357
TasI	AATT	5 cut(s)	9, 62, 86, 288, 300
TauI	GCSGC	1 cut(s)	320
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TseFI	GTSAC	2 cut(s)	139, 155
Tsp45I	GTSAC	2 cut(s)	139, 155
TspDTI	ATGAA	2 cut(s)	262, 300
XceI	RCATGY	2 cut(s)	132, 388
XmiI	GTMKAC	1 cut(s)	203
Zsp2I	ATGCAT	2 cut(s)	222, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.