Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003949

Physical Location & Seq

Genomic Coordinates Forward (+)

75729094 .. 75729480

Gene Structure 387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52826

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAGGTTGATAAACCGGGTGTAAACAACGCCATACTCTTTTTTCTCTTCATCATGATGGCGACTTCCCCTATGGTGGATGCGCAGCTAGTTCTACCTCTGAGCCTCTTTCCGGAGTGGATGGTGGAGTACAAGAACTGGTACGTCGGCGGGTTCAACGACTATTGCTATGTTGAGAATATATATACATCCCACATGGGAAAAATGGGACCTTGCCTATGGGTTTATAAGGGTTTGGGCCACTCCATCCATTGCCAATTGGTTTTGGATGTGAACCCCATATTATTTTATCATGGTATCAAAGCGGGTTACCCACGTGTTTGGTTTCAGCGATGGCCACACGTGCTCACAATCACCCAATATAACTTGTCCACGTGTATGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2781

Protein Analysis

128

Amino Acids

14.92

Weight (kDa)

6.16

Isoelectric Point (pI)

30.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06361
malus_domestica	MD08G1226000.v1.1
pyrus_communis	pycom05g24160
rosa_chinensis	RchiOBHm_Chr2g0159691 RchiOBHm_Chr2g0168161 RchiOBHm_Chr4g0433811 RchiOBHm_Chr5g0018671 RchiOBHm_Chr5g0082331
rosa_multiflora	Rmu_sc0000698.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019890 Rroxscaffold_1G00030050 Rroxscaffold_1G00032950 Rroxscaffold_5G00335810 Rroxscaffold_5G00345660 Rroxscaffold_5G00345670 Rroxscaffold_6G00401880 Rroxscaffold_6G00401890 Rroxscaffold_7G00194550
rosa_rugosa	Rorug04G0046200 Rorug04G0124800 Rorug04G0335500 Rorug04G0429300 Rorug05G0081300 Rorug05G0117900 Rorug05G0181600 Rorug05G0438900 Rorug05G0452900 Rorug05G0506200.1 Rorug06G0093700 Rorug06G0458300 Rorug07G0106200 Rorug07G0121100
rosa_samantha	Rh2DG566900 Rh3CG025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
Acc16I	TGCGCA	1 cut(s)	84
AccIII	TCCGGA	1 cut(s)	112
AciI	CCGC	2 cut(s)	150, 305
AcoI	YGGCCR	1 cut(s)	335
AcvI	CACGTG	3 cut(s)	317, 343, 375
AfaI	GTAC	2 cut(s)	131, 143
AfiI	CCNNNNNNNGG	2 cut(s)	76, 112
AflIII	ACRYGT	3 cut(s)	316, 340, 374
AgsI	TTSAA	1 cut(s)	157
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw21I	GWGCWC	1 cut(s)	348
Aor13HI	TCCGGA	1 cut(s)	112
AoxI	GGCC	2 cut(s)	238, 335
ApeKI	GCWGC	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	2 cut(s)	209, 238
AsuC2I	CCSGG	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	337
BbrPI	CACGTG	3 cut(s)	317, 343, 375
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	4 cut(s)	52, 115, 254, 327
BcnI	CCSGG	1 cut(s)	18
BfaI	CTAG	1 cut(s)	89
BisI	GCNGC	1 cut(s)	86
BlsI	GCNGC	1 cut(s)	87
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	2 cut(s)	209, 238
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	18
BsaAI	YACGTR	3 cut(s)	317, 343, 375
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 112
Bse1I	ACTGG	1 cut(s)	143
Bse3DI	GCAATG	1 cut(s)	250
BseAI	TCCGGA	1 cut(s)	112
BseGI	GGATG	5 cut(s)	85, 126, 188, 246, 274
BseLI	CCNNNNNNNGG	2 cut(s)	76, 112
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	97
BshFI	GGCC	2 cut(s)	240, 337
BsiHKAI	GWGCWC	1 cut(s)	348
BsiSI	CCGG	2 cut(s)	17, 113
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	2 cut(s)	76, 112
BsmFI	GGGAC	1 cut(s)	222
BsnI	GGCC	2 cut(s)	240, 337
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp13I	TCCGGA	1 cut(s)	112
BspACI	CCGC	2 cut(s)	150, 305
BspANI	GGCC	2 cut(s)	240, 337
BspCNI	CTCAG	1 cut(s)	93
BspEI	TCCGGA	1 cut(s)	112
BspHI	TCATGA	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	250
BsrI	ACTGG	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	53
BstBAI	YACGTR	3 cut(s)	317, 343, 375
BstDEI	CTNAG	1 cut(s)	101
BstEII	GGTNACC	1 cut(s)	308
BstF5I	GGATG	5 cut(s)	85, 126, 188, 246, 274
BstHHI	GCGC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	343
BstPI	GGTNACC	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	97
BstXI	CCANNNNNNTGG	2 cut(s)	321, 379
BsuRI	GGCC	2 cut(s)	240, 337
BtgZI	GCGATG	1 cut(s)	346
BtsCI	GGATG	5 cut(s)	85, 126, 188, 246, 274
CciI	TCATGA	1 cut(s)	54
CfoI	GCGC	1 cut(s)	85
Cfr13I	GGNCC	2 cut(s)	209, 238
Csp6I	GTAC	2 cut(s)	130, 142
CviAII	CATG	3 cut(s)	55, 196, 293
CviJI	RGCY	4 cut(s)	88, 105, 240, 337
CviKI_1	RGCY	4 cut(s)	88, 105, 240, 337
CviQI	GTAC	2 cut(s)	130, 142
DdeI	CTNAG	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	335
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	209
Eco72I	CACGTG	3 cut(s)	317, 343, 375
Eco91I	GGTNACC	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	209
EcoO65I	GGTNACC	1 cut(s)	308
FaeI	CATG	3 cut(s)	58, 199, 296
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	3 cut(s)	54, 195, 292
FauI	CCCGC	2 cut(s)	143, 298
Fnu4HI	GCNGC	1 cut(s)	86
FokI	GGATG	5 cut(s)	92, 133, 175, 233, 281
Fsp4HI	GCNGC	1 cut(s)	86
FspBI	CTAG	1 cut(s)	89
FspI	TGCGCA	1 cut(s)	84
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	240, 337
HapII	CCGG	2 cut(s)	17, 113
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	3 cut(s)	58, 199, 296
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HpaII	CCGG	2 cut(s)	17, 113
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	3 cut(s)	25, 274, 372
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	2 cut(s)	55, 113
Hpy8I	GTNNAC	3 cut(s)	25, 274, 372
Hpy99I	CGWCG	1 cut(s)	149
HpyCH4IV	ACGT	4 cut(s)	144, 316, 342, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	343
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	4 cut(s)	144, 316, 342, 374
Hsp92II	CATG	3 cut(s)	58, 199, 296
HspAI	GCGC	1 cut(s)	83
Kpn2I	TCCGGA	1 cut(s)	112
LpnPI	CCDG	3 cut(s)	30, 124, 126
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	4 cut(s)	144, 316, 342, 374
MaeIII	GTNAC	1 cut(s)	308
MboII	GAAGA	1 cut(s)	40
MfeI	CAATTG	1 cut(s)	257
MhlI	GDGCHC	1 cut(s)	348
MlsI	TGGCCA	1 cut(s)	337
MluCI	AATT	1 cut(s)	257
MluNI	TGGCCA	1 cut(s)	337
MnlI	CCTC	2 cut(s)	108, 116
Mox20I	TGGCCA	1 cut(s)	337
MroI	TCCGGA	1 cut(s)	112
MscI	TGGCCA	1 cut(s)	337
MseI	TTAA	1 cut(s)	385
MslI	CAYNNNNRTG	2 cut(s)	56, 377
Msp20I	TGGCCA	1 cut(s)	337
MspI	CCGG	2 cut(s)	17, 113
MspR9I	CCNGG	1 cut(s)	18
MunI	CAATTG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	343
NciI	CCSGG	1 cut(s)	18
NlaIII	CATG	3 cut(s)	58, 199, 296
NlaIV	GGNNCC	1 cut(s)	210
NsbI	TGCGCA	1 cut(s)	84
PagI	TCATGA	1 cut(s)	54
PkrI	GCNGC	1 cut(s)	87
PmaCI	CACGTG	3 cut(s)	317, 343, 375
PmlI	CACGTG	3 cut(s)	317, 343, 375
Ppu21I	YACGTR	3 cut(s)	317, 343, 375
PpuMI	RGGWCCY	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	209
PspCI	CACGTG	3 cut(s)	317, 343, 375
PspEI	GGTNACC	1 cut(s)	308
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	2 cut(s)	209, 238
PspPPI	RGGWCCY	1 cut(s)	209
RsaI	GTAC	2 cut(s)	131, 143
RsaNI	GTAC	2 cut(s)	130, 142
RseI	CAYNNNNRTG	2 cut(s)	56, 377
SaqAI	TTAA	1 cut(s)	385
SatI	GCNGC	1 cut(s)	86
Sau96I	GGNCC	2 cut(s)	209, 238
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	8 cut(s)	9, 90, 100, 147, 214, 319, 345, 377
SfaNI	GCATC	1 cut(s)	70
SinI	GGWCC	1 cut(s)	209
SmiMI	CAYNNNNRTG	2 cut(s)	56, 377
Sse9I	AATT	1 cut(s)	257
SsiI	CCGC	2 cut(s)	150, 305
SspMI	CTAG	1 cut(s)	89
StyD4I	CCNGG	1 cut(s)	16
TaiI	ACGT	4 cut(s)	147, 319, 345, 377
TasI	AATT	1 cut(s)	257
TatI	WGTACW	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	385
Tru9I	TTAA	1 cut(s)	385
TseI	GCWGC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	209
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.