Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003949

Physical Location & Seq

Genomic Coordinates Forward (+)

16117271 .. 16117817

Gene Structure 547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00345670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGTGGGTAGCCTAGAAGATGCGGTAAAAGATGTCTCGGAGGTTGGTGCCGATGGACAAGTAGCAGTTTCGACGGTGGGGATGAGGGTCGACCATGTGAAGTGTGAGAATCACAATTCTAAATCAAATGGATTGACGAATGACCGGTTGTCGGATGCAGCACATGAGGTTTCGGGGATTGGTGCGGGTGGAGAAATACCAATTTTGACCGATGTGGACGAGGTTGATGGGAAGCCCGTTGAGGTTGCCGAGAATGAGAAGTTTGAGAAGGACAACCAGGATAACTTGGTTTTGGAAGCTGCTGGAGATCATCATACCCGGCCACCATATTTTTCAGGCCACTTTTATGTAGAATCGGGAAAGTGTGATGTTAGGGAGAAAATGGAGGCTGTTGGGATGGCCTTGATTGAAGTTGATTTTGGTTTAAAACTGATGGTGAATGGTGGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0019867 GO:0019899 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0038023 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051117 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

150

Amino Acids

16.04

Weight (kDa)

4.54

Isoelectric Point (pI)

14.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06361
malus_domestica	MD08G1226000.v1.1
pyrus_communis	pycom05g24160
rosa_chinensis	RchiOBHm_Chr2g0159691 RchiOBHm_Chr2g0168161 RchiOBHm_Chr4g0433811 RchiOBHm_Chr5g0018671 RchiOBHm_Chr5g0082331
rosa_multiflora	Rmu_sc0000698.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019890 Rroxscaffold_1G00030050 Rroxscaffold_1G00032950 Rroxscaffold_5G00335810 Rroxscaffold_5G00345660 Rroxscaffold_5G00345670 Rroxscaffold_6G00401880 Rroxscaffold_6G00401890 Rroxscaffold_7G00194550
rosa_rugosa	Rorug04G0046200 Rorug04G0124800 Rorug04G0335500 Rorug04G0429300 Rorug05G0081300 Rorug05G0117900 Rorug05G0181600 Rorug05G0438900 Rorug05G0452900 Rorug05G0506200.1 Rorug06G0093700 Rorug06G0458300 Rorug07G0106200 Rorug07G0121100
rosa_samantha	Rh2DG566900 Rh3CG025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	47
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	2 cut(s)	23, 185
AcoI	YGGCCR	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgeI	ACCGGT	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	410
AhdI	GACNNNNNGTC	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	276
AjuI	GAANNNNNNNTTGG	2 cut(s)	402, 434
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
Alw26I	GTCTC	1 cut(s)	40
AoxI	GGCC	3 cut(s)	320, 337, 399
ApeKI	GCWGC	2 cut(s)	158, 299
AsiGI	ACCGGT	1 cut(s)	144
AsuC2I	CCSGG	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	170, 286
BccI	CCATC	4 cut(s)	47, 221, 391, 427
BciT130I	CCWGG	1 cut(s)	278
BcnI	CCSGG	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	40
BfaI	CTAG	1 cut(s)	14
BisI	GCNGC	2 cut(s)	159, 300
BlsI	GCNGC	2 cut(s)	160, 301
Bme1390I	CCNGG	2 cut(s)	278, 319
BmeRI	GACNNNNNGTC	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	2 cut(s)	278, 319
BmsI	GCATC	2 cut(s)	10, 145
BpmI	CTGGAG	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	319
BsaWI	WCCGGW	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse118I	RCCGGY	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	278
BseGI	GGATG	3 cut(s)	87, 160, 402
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseXI	GCAGC	2 cut(s)	170, 286
BshFI	GGCC	3 cut(s)	322, 339, 401
BshNI	GGYRCC	1 cut(s)	47
BshTI	ACCGGT	1 cut(s)	144
BsiSI	CCGG	2 cut(s)	145, 319
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	40
BsnI	GGCC	3 cut(s)	322, 339, 401
Bsp143I	GATC	1 cut(s)	307
BspACI	CCGC	2 cut(s)	23, 185
BspANI	GGCC	3 cut(s)	322, 339, 401
BspLI	GGNNCC	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	144
BssAI	RCCGGY	1 cut(s)	144
BssMI	GATC	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	76
BstF5I	GGATG	3 cut(s)	87, 160, 402
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	307
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	2 cut(s)	276, 317
BstV1I	GCAGC	2 cut(s)	170, 286
BsuRI	GGCC	3 cut(s)	322, 339, 401
BtsCI	GGATG	3 cut(s)	87, 160, 402
Cfr10I	RCCGGY	1 cut(s)	144
CspAI	ACCGGT	1 cut(s)	144
CviAII	CATG	2 cut(s)	95, 164
CviJI	RGCY	7 cut(s)	12, 235, 299, 322, 339, 389, 401
CviKI_1	RGCY	7 cut(s)	12, 235, 299, 322, 339, 389, 401
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
DraI	TTTAAA	1 cut(s)	426
DriI	GACNNNNNGTC	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	320
Eam1105I	GACNNNNNGTC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	276
FaeI	CATG	2 cut(s)	98, 167
FaiI	YATR	5 cut(s)	96, 165, 315, 328, 348
FatI	CATG	2 cut(s)	94, 163
FauI	CCCGC	1 cut(s)	178
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	159, 300
FokI	GGATG	3 cut(s)	94, 167, 409
Fsp4HI	GCNGC	2 cut(s)	159, 300
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	2 cut(s)	159, 300
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	3 cut(s)	322, 339, 401
HapII	CCGG	2 cut(s)	145, 319
Hin1II	CATG	2 cut(s)	98, 167
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	2 cut(s)	109, 353
HpaII	CCGG	2 cut(s)	145, 319
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	2 cut(s)	91, 217
Hpy188I	TCNGA	2 cut(s)	40, 154
Hpy188III	TCNNGA	1 cut(s)	357
Hpy8I	GTNNAC	2 cut(s)	91, 217
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	1 cut(s)	158
Hsp92II	CATG	2 cut(s)	98, 167
Kzo9I	GATC	1 cut(s)	307
LpnPI	CCDG	6 cut(s)	158, 263, 288, 290, 321, 332
Lsp1109I	GCAGC	2 cut(s)	170, 286
LweI	GCATC	2 cut(s)	10, 145
MaeI	CTAG	1 cut(s)	14
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	1 cut(s)	29
MluCI	AATT	2 cut(s)	115, 201
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	6 cut(s)	34, 78, 160, 214, 235, 379
MseI	TTAA	2 cut(s)	425, 451
MslI	CAYNNNNRTG	1 cut(s)	345
MspI	CCGG	2 cut(s)	145, 319
MspR9I	CCNGG	2 cut(s)	278, 319
MvaI	CCWGG	1 cut(s)	278
NciI	CCSGG	1 cut(s)	319
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	2 cut(s)	98, 167
NlaIV	GGNNCC	1 cut(s)	49
NmeAIII	GCCGAG	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	109, 353
PinAI	ACCGGT	1 cut(s)	144
PkrI	GCNGC	2 cut(s)	160, 301
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	345
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	425, 451
SatI	GCNGC	2 cut(s)	159, 300
Sau3AI	GATC	1 cut(s)	307
ScrFI	CCNGG	2 cut(s)	278, 319
SetI	ASST	5 cut(s)	45, 171, 225, 246, 301
SfaNI	GCATC	2 cut(s)	10, 145
SmiMI	CAYNNNNRTG	1 cut(s)	345
Sse9I	AATT	2 cut(s)	115, 201
SsiI	CCGC	2 cut(s)	23, 185
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	2 cut(s)	276, 317
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	2 cut(s)	71, 90
TaqII	GACCGA	1 cut(s)	224
TasI	AATT	2 cut(s)	115, 201
TfiI	GAWTC	2 cut(s)	109, 353
Tru1I	TTAA	2 cut(s)	425, 451
Tru9I	TTAA	2 cut(s)	425, 451
TseI	GCWGC	2 cut(s)	158, 299
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.