Translocase of chloroplast
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g06361 |
| malus_domestica | MD08G1226000.v1.1 |
| pyrus_communis | pycom05g24160 |
| rosa_chinensis | RchiOBHm_Chr2g0159691 RchiOBHm_Chr2g0168161 RchiOBHm_Chr4g0433811 RchiOBHm_Chr5g0018671 RchiOBHm_Chr5g0082331 |
| rosa_multiflora | Rmu_sc0000698.1_g000050 |
| rosa_roxburghii | Rroxscaffold_1G00019890 Rroxscaffold_1G00030050 Rroxscaffold_1G00032950 Rroxscaffold_5G00335810 Rroxscaffold_5G00345660 Rroxscaffold_5G00345670 Rroxscaffold_6G00401880 Rroxscaffold_6G00401890 Rroxscaffold_7G00194550 |
| rosa_rugosa | Rorug04G0046200 Rorug04G0124800 Rorug04G0335500 Rorug04G0429300 Rorug05G0081300 Rorug05G0117900 Rorug05G0181600 Rorug05G0438900 Rorug05G0452900 Rorug05G0506200.1 Rorug06G0093700 Rorug06G0458300 Rorug07G0106200 Rorug07G0121100 |
| rosa_samantha | Rh2DG566900 Rh3CG025900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 83 |
| AciI | CCGC | 2 cut(s) | 251, 383 |
| AcoI | YGGCCR | 2 cut(s) | 22, 519 |
| AfaI | GTAC | 3 cut(s) | 63, 257, 562 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 349 |
| AgeI | ACCGGT | 1 cut(s) | 342 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 346 |
| AjnI | CCWGG | 1 cut(s) | 474 |
| AleI | CACNNNNGTG | 1 cut(s) | 57 |
| AluBI | AGCT | 3 cut(s) | 117, 154, 200 |
| AluI | AGCT | 3 cut(s) | 117, 154, 200 |
| Ama87I | CYCGRG | 1 cut(s) | 135 |
| AoxI | GGCC | 4 cut(s) | 22, 285, 519, 536 |
| ApeKI | GCWGC | 2 cut(s) | 208, 356 |
| AsiGI | ACCGGT | 1 cut(s) | 342 |
| AsuC2I | CCSGG | 1 cut(s) | 518 |
| AsuHPI | GGTGA | 1 cut(s) | 256 |
| AvaI | CYCGRG | 1 cut(s) | 135 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 239, 271 |
| BbvI | GCAGC | 2 cut(s) | 195, 368 |
| BccI | CCATC | 2 cut(s) | 104, 419 |
| BciT130I | CCWGG | 1 cut(s) | 476 |
| BcnI | CCSGG | 1 cut(s) | 518 |
| BfaI | CTAG | 1 cut(s) | 177 |
| BisI | GCNGC | 2 cut(s) | 209, 357 |
| BlsI | GCNGC | 2 cut(s) | 210, 358 |
| Bme1390I | CCNGG | 2 cut(s) | 476, 518 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 346 |
| BmeT110I | CYCGRG | 1 cut(s) | 135 |
| BmrFI | CCNGG | 2 cut(s) | 476, 518 |
| BmsI | GCATC | 1 cut(s) | 343 |
| BpmI | CTGGAG | 1 cut(s) | 97 |
| BpuMI | CCSGG | 1 cut(s) | 518 |
| BsaBI | GATNNNNATC | 1 cut(s) | 128 |
| BsaWI | WCCGGW | 1 cut(s) | 342 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 349 |
| Bse118I | RCCGGY | 1 cut(s) | 342 |
| Bse8I | GATNNNNATC | 1 cut(s) | 128 |
| BseBI | CCWGG | 1 cut(s) | 476 |
| BseGI | GGATG | 2 cut(s) | 286, 358 |
| BseJI | GATNNNNATC | 1 cut(s) | 128 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 349 |
| BseXI | GCAGC | 2 cut(s) | 195, 368 |
| BshFI | GGCC | 4 cut(s) | 24, 287, 521, 538 |
| BshTI | ACCGGT | 1 cut(s) | 342 |
| BsiHKCI | CYCGRG | 1 cut(s) | 135 |
| BsiSI | CCGG | 3 cut(s) | 343, 502, 518 |
| BslFI | GGGAC | 1 cut(s) | 30 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 349 |
| BsmFI | GGGAC | 1 cut(s) | 30 |
| BsnI | GGCC | 4 cut(s) | 24, 287, 521, 538 |
| BsoBI | CYCGRG | 1 cut(s) | 135 |
| Bsp143I | GATC | 2 cut(s) | 3, 506 |
| BspACI | CCGC | 2 cut(s) | 251, 383 |
| BspANI | GGCC | 4 cut(s) | 24, 287, 521, 538 |
| BsrFI | RCCGGY | 1 cut(s) | 342 |
| BssAI | RCCGGY | 1 cut(s) | 342 |
| BssMI | GATC | 2 cut(s) | 3, 506 |
| Bst2UI | CCWGG | 1 cut(s) | 476 |
| Bst4CI | ACNGT | 3 cut(s) | 193, 266, 275 |
| BstDEI | CTNAG | 1 cut(s) | 120 |
| BstF5I | GGATG | 2 cut(s) | 286, 358 |
| BstKTI | GATC | 2 cut(s) | 6, 509 |
| BstMBI | GATC | 2 cut(s) | 3, 506 |
| BstNI | CCWGG | 1 cut(s) | 476 |
| BstSCI | CCNGG | 2 cut(s) | 474, 516 |
| BstV1I | GCAGC | 2 cut(s) | 195, 368 |
| BsuRI | GGCC | 4 cut(s) | 24, 287, 521, 538 |
| BtsCI | GGATG | 2 cut(s) | 286, 358 |
| Cfr10I | RCCGGY | 1 cut(s) | 342 |
| Csp6I | GTAC | 3 cut(s) | 62, 256, 561 |
| CspAI | ACCGGT | 1 cut(s) | 342 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 528, 563 |
| CviAII | CATG | 1 cut(s) | 293 |
| CviQI | GTAC | 3 cut(s) | 62, 256, 561 |
| DdeI | CTNAG | 1 cut(s) | 120 |
| DpnI | GATC | 2 cut(s) | 5, 508 |
| DpnII | GATC | 2 cut(s) | 3, 506 |
| DriI | GACNNNNNGTC | 1 cut(s) | 346 |
| EaeI | YGGCCR | 2 cut(s) | 22, 519 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 346 |
| EciI | GGCGGA | 1 cut(s) | 266 |
| Eco88I | CYCGRG | 1 cut(s) | 135 |
| EcoRII | CCWGG | 1 cut(s) | 474 |
| FaeI | CATG | 1 cut(s) | 296 |
| FaiI | YATR | 7 cut(s) | 73, 83, 127, 129, 294, 514, 527 |
| FaqI | GGGAC | 1 cut(s) | 30 |
| FatI | CATG | 1 cut(s) | 292 |
| FauI | CCCGC | 1 cut(s) | 376 |
| Fnu4HI | GCNGC | 2 cut(s) | 209, 357 |
| FokI | GGATG | 2 cut(s) | 293, 365 |
| Fsp4HI | GCNGC | 2 cut(s) | 209, 357 |
| FspBI | CTAG | 1 cut(s) | 177 |
| GluI | GCNGC | 2 cut(s) | 209, 357 |
| GsuI | CTGGAG | 1 cut(s) | 97 |
| HaeIII | GGCC | 4 cut(s) | 24, 287, 521, 538 |
| HapII | CCGG | 3 cut(s) | 343, 502, 518 |
| Hin1II | CATG | 1 cut(s) | 296 |
| HinfI | GANTC | 4 cut(s) | 92, 142, 165, 307 |
| HpaII | CCGG | 3 cut(s) | 343, 502, 518 |
| HphI | GGTGA | 1 cut(s) | 256 |
| Hpy166II | GTNNAC | 2 cut(s) | 62, 415 |
| Hpy188I | TCNGA | 1 cut(s) | 352 |
| Hpy8I | GTNNAC | 2 cut(s) | 62, 415 |
| Hpy99I | CGWCG | 1 cut(s) | 275 |
| HpyAV | CCTTC | 3 cut(s) | 235, 241, 460 |
| HpyCH4III | ACNGT | 3 cut(s) | 193, 266, 275 |
| HpyCH4V | TGCA | 1 cut(s) | 356 |
| HpyF3I | CTNAG | 1 cut(s) | 120 |
| Hsp92II | CATG | 1 cut(s) | 296 |
| Kzo9I | GATC | 2 cut(s) | 3, 506 |
| LmnI | GCTCC | 1 cut(s) | 151 |
| LpnPI | CCDG | 7 cut(s) | 127, 356, 461, 488, 515, 520, 531 |
| Lsp1109I | GCAGC | 2 cut(s) | 195, 368 |
| LweI | GCATC | 1 cut(s) | 343 |
| MaeI | CTAG | 1 cut(s) | 177 |
| MalI | GATC | 2 cut(s) | 5, 508 |
| MboI | GATC | 2 cut(s) | 3, 506 |
| MluCI | AATT | 2 cut(s) | 313, 399 |
| MmeI | TCCRAC | 1 cut(s) | 330 |
| MnlI | CCTC | 5 cut(s) | 152, 277, 358, 412, 433 |
| MslI | CAYNNNNRTG | 1 cut(s) | 57 |
| MspI | CCGG | 3 cut(s) | 343, 502, 518 |
| MspR9I | CCNGG | 2 cut(s) | 476, 518 |
| MvaI | CCWGG | 1 cut(s) | 476 |
| NciI | CCSGG | 1 cut(s) | 518 |
| NdeII | GATC | 2 cut(s) | 3, 506 |
| NlaIII | CATG | 1 cut(s) | 296 |
| NmeAIII | GCCGAG | 2 cut(s) | 50, 472 |
| OliI | CACNNNNGTG | 1 cut(s) | 57 |
| PfeI | GAWTC | 4 cut(s) | 92, 142, 165, 307 |
| PinAI | ACCGGT | 1 cut(s) | 342 |
| PkrI | GCNGC | 2 cut(s) | 210, 358 |
| PsiI | TTATAA | 1 cut(s) | 83 |
| Psp6I | CCWGG | 1 cut(s) | 474 |
| PspGI | CCWGG | 1 cut(s) | 474 |
| RsaI | GTAC | 3 cut(s) | 63, 257, 562 |
| RsaNI | GTAC | 3 cut(s) | 62, 256, 561 |
| RseI | CAYNNNNRTG | 1 cut(s) | 57 |
| SatI | GCNGC | 2 cut(s) | 209, 357 |
| Sau3AI | GATC | 2 cut(s) | 3, 506 |
| ScrFI | CCNGG | 2 cut(s) | 476, 518 |
| SetI | ASST | 7 cut(s) | 119, 156, 202, 246, 369, 423, 444 |
| SfaNI | GCATC | 1 cut(s) | 343 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 57 |
| Sse9I | AATT | 2 cut(s) | 313, 399 |
| SsiI | CCGC | 2 cut(s) | 251, 383 |
| SspMI | CTAG | 1 cut(s) | 177 |
| StyD4I | CCNGG | 2 cut(s) | 474, 516 |
| TaaI | ACNGT | 3 cut(s) | 193, 266, 275 |
| TaqI | TCGA | 4 cut(s) | 145, 157, 239, 270 |
| TaqII | GACCGA | 1 cut(s) | 422 |
| TasI | AATT | 2 cut(s) | 313, 399 |
| TatI | WGTACW | 1 cut(s) | 255 |
| TfiI | GAWTC | 4 cut(s) | 92, 142, 165, 307 |
| TseI | GCWGC | 2 cut(s) | 208, 356 |
| TspDTI | ATGAA | 1 cut(s) | 174 |
| TspGWI | ACGGA | 1 cut(s) | 548 |
| XspI | CTAG | 1 cut(s) | 177 |