Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003949

Physical Location & Seq

Genomic Coordinates Forward (+)

62627060 .. 62630198

Gene Structure 3139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0452900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAGCCAAGATGCATATGACAATTTGGACAATGACCAAGTACTCAAAGGCTGCTTCCCCATGAACTCTAGGAGTCCCAATGCTCATGGAGGCCTTCACTCTCTCCCCACTTCAACCCTCCAGCCTCTCTCTAATCGCCTCCAGAAGTTCGACGCTCGCATACGAGCTGGGCCTTTAGAGGAGTGGGAAGGCAGTTGGAATATGGACATGTCCAACTCTGTGATCACTTCCATTCGAGAGTTTGTTAGAGAAGGAGCCATTGGCAGAACTAAAACTAAAGATAAAGCGGATCGTGCCACAATTGAAAAGGCCATTGATCCAAAAACCCGGATGCTTTTAATCAAAGTTTTGAAGGCTGGTCCAGATGATAAAATCAATGGCTGCATTGCTACCGGCAAACAAGCAAATGTTTATCACGCAACTAAGTCTGATGGCGAGGAGCTGGCTATCAAGGTGTACAAGACATCAGTTCTGGATTTCAAATATGTACAAGGGGACCGCCGATACAGAAAGCGATACTGCAAGCACAACCCCAGGGAGATGGCGGTGAAGGTATGGGCTGCTAAAGAAAAGAGGAATCTGGACAGTTTAGATACTTCTTCAGAAAGTAATAAAATTAGTATACTTTATGCCAGTGAAAAGGGCCACTTGTACATCATTGATGTTTCTCTAGCAGTTGAACTGGACCATGTTCATGCGAATGAATTCCTATGTCCAGATTGTGTCCATGTTTCTGATTTCTTTAAGAAAAAAGGTGTGGCAGTTATGACGATTCGTGAGCTCTTTGATTTTATAGTTGATCCATGTATTGCTGATGAGGCGGTGGACACTCATCTGGATGAGTCAAGAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

284

Amino Acids

32.01

Weight (kDa)

7.11

Isoelectric Point (pI)

27.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RIO1	PF01163	136 - 199	4.7e-12	RIO domain
RIO1	PF01163	213 - 260	3.7e-09	RIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06361
malus_domestica	MD08G1226000.v1.1
pyrus_communis	pycom05g24160
rosa_chinensis	RchiOBHm_Chr2g0159691 RchiOBHm_Chr2g0168161 RchiOBHm_Chr4g0433811 RchiOBHm_Chr5g0018671 RchiOBHm_Chr5g0082331
rosa_multiflora	Rmu_sc0000698.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019890 Rroxscaffold_1G00030050 Rroxscaffold_1G00032950 Rroxscaffold_5G00335810 Rroxscaffold_5G00345660 Rroxscaffold_5G00345670 Rroxscaffold_6G00401880 Rroxscaffold_6G00401890 Rroxscaffold_7G00194550
rosa_rugosa	Rorug04G0046200 Rorug04G0124800 Rorug04G0335500 Rorug04G0429300 Rorug05G0081300 Rorug05G0117900 Rorug05G0181600 Rorug05G0438900 Rorug05G0452900 Rorug05G0506200.1 Rorug06G0093700 Rorug06G0458300 Rorug07G0106200 Rorug07G0121100
rosa_samantha	Rh2DG566900 Rh3CG025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	622
AciI	CCGC	4 cut(s)	287, 499, 545, 821
AclWI	GGATC	3 cut(s)	297, 311, 794
AcsI	RAATTY	1 cut(s)	704
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	4 cut(s)	42, 458, 489, 653
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	5 cut(s)	114, 305, 352, 481, 680
AjnI	CCWGG	1 cut(s)	533
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	3 cut(s)	167, 442, 781
AluI	AGCT	3 cut(s)	167, 442, 781
Alw21I	GWGCWC	1 cut(s)	783
AlwI	GGATC	3 cut(s)	297, 311, 794
AoxI	GGCC	4 cut(s)	91, 170, 309, 643
ApeKI	GCWGC	3 cut(s)	51, 381, 560
ApoI	RAATTY	1 cut(s)	704
Asp700I	GAANNNNTTC	1 cut(s)	704
AspS9I	GGNCC	5 cut(s)	170, 359, 496, 643, 685
AsuC2I	CCSGG	1 cut(s)	328
AsuHPI	GGTGA	1 cut(s)	559
AvaII	GGWCC	3 cut(s)	359, 496, 685
BanII	GRGCYC	1 cut(s)	783
Bbv12I	GWGCWC	1 cut(s)	783
BbvI	GCAGC	3 cut(s)	38, 368, 547
BccI	CCATC	2 cut(s)	425, 535
BciT130I	CCWGG	1 cut(s)	535
BclI	TGATCA	1 cut(s)	222
BcnI	CCSGG	1 cut(s)	328
BfaI	CTAG	2 cut(s)	69, 671
BisI	GCNGC	3 cut(s)	52, 382, 561
BlsI	GCNGC	3 cut(s)	53, 383, 562
BmcAI	AGTACT	1 cut(s)	42
Bme1390I	CCNGG	2 cut(s)	328, 535
Bme18I	GGWCC	3 cut(s)	359, 496, 685
BmgT120I	GGNCC	5 cut(s)	170, 359, 496, 643, 685
BmiI	GGNNCC	2 cut(s)	256, 497
BmrFI	CCNGG	2 cut(s)	328, 535
BmsI	GCATC	1 cut(s)	321
BpmI	CTGGAG	2 cut(s)	104, 125
BpuMI	CCSGG	1 cut(s)	328
BsaJI	CCNNGG	2 cut(s)	533, 534
Bse118I	RCCGGY	1 cut(s)	392
Bse1I	ACTGG	2 cut(s)	633, 687
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	535
BseDI	CCNNGG	2 cut(s)	533, 534
BseGI	GGATG	2 cut(s)	336, 844
BseMI	GCAATG	1 cut(s)	384
BseNI	ACTGG	2 cut(s)	633, 687
BseRI	GAGGAG	2 cut(s)	194, 452
BseXI	GCAGC	3 cut(s)	38, 368, 547
BseYI	CCCAGC	1 cut(s)	167
BshFI	GGCC	4 cut(s)	93, 172, 311, 645
BsiHKAI	GWGCWC	1 cut(s)	783
BsiSI	CCGG	2 cut(s)	328, 393
BslFI	GGGAC	2 cut(s)	60, 509
BsmFI	GGGAC	2 cut(s)	60, 509
BsnI	GGCC	4 cut(s)	93, 172, 311, 645
Bsp1286I	GDGCHC	1 cut(s)	783
Bsp1407I	TGTACA	3 cut(s)	456, 487, 651
Bsp143I	GATC	4 cut(s)	222, 289, 316, 799
BspACI	CCGC	4 cut(s)	287, 499, 545, 821
BspANI	GGCC	4 cut(s)	93, 172, 311, 645
BspLI	GGNNCC	2 cut(s)	256, 497
BspPI	GGATC	3 cut(s)	297, 311, 794
BsrDI	GCAATG	1 cut(s)	384
BsrFI	RCCGGY	1 cut(s)	392
BsrGI	TGTACA	3 cut(s)	456, 487, 651
BsrI	ACTGG	2 cut(s)	633, 687
BssAI	RCCGGY	1 cut(s)	392
BssECI	CCNNGG	2 cut(s)	533, 534
BssMI	GATC	4 cut(s)	222, 289, 316, 799
BssNAI	GTATAC	1 cut(s)	623
Bst1107I	GTATAC	1 cut(s)	623
Bst2UI	CCWGG	1 cut(s)	535
Bst4CI	ACNGT	1 cut(s)	587
BstAUI	TGTACA	3 cut(s)	456, 487, 651
BstC8I	GCNNGC	3 cut(s)	157, 444, 524
BstDEI	CTNAG	1 cut(s)	423
BstF5I	GGATG	2 cut(s)	336, 844
BstKTI	GATC	4 cut(s)	225, 292, 319, 802
BstMBI	GATC	4 cut(s)	222, 289, 316, 799
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 818
BstNI	CCWGG	1 cut(s)	535
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	2 cut(s)	326, 533
BstV1I	GCAGC	3 cut(s)	38, 368, 547
BstXI	CCANNNNNNTGG	1 cut(s)	541
BstZ17I	GTATAC	1 cut(s)	623
BsuRI	GGCC	4 cut(s)	93, 172, 311, 645
BtsCI	GGATG	2 cut(s)	336, 844
BtsIMutI	CAGTG	1 cut(s)	640
Cac8I	GCNNGC	3 cut(s)	157, 444, 524
Cfr10I	RCCGGY	1 cut(s)	392
Cfr13I	GGNCC	5 cut(s)	170, 359, 496, 643, 685
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	4 cut(s)	41, 457, 488, 652
CviAII	CATG	7 cut(s)	61, 86, 208, 689, 695, 728, 804
CviQI	GTAC	4 cut(s)	41, 457, 488, 652
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	4 cut(s)	224, 291, 318, 801
DpnII	GATC	4 cut(s)	222, 289, 316, 799
Ecl136II	GAGCTC	1 cut(s)	781
Eco147I	AGGCCT	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	783
Eco47I	GGWCC	3 cut(s)	359, 496, 685
Eco53kI	GAGCTC	1 cut(s)	781
Eco57I	CTGAAG	1 cut(s)	585
EcoICRI	GAGCTC	1 cut(s)	781
EcoRI	GAATTC	1 cut(s)	704
EcoRII	CCWGG	1 cut(s)	533
EcoT22I	ATGCAT	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	783
FaeI	CATG	7 cut(s)	64, 89, 211, 692, 698, 731, 807
FalI	AAGNNNNNCTT	2 cut(s)	632, 664
FaqI	GGGAC	2 cut(s)	60, 509
FatI	CATG	7 cut(s)	60, 85, 207, 688, 694, 727, 803
FauNDI	CATATG	1 cut(s)	16
FbaI	TGATCA	1 cut(s)	222
FblI	GTMKAC	1 cut(s)	622
Fnu4HI	GCNGC	3 cut(s)	52, 382, 561
FokI	GGATG	2 cut(s)	343, 851
FriOI	GRGCYC	1 cut(s)	783
Fsp4HI	GCNGC	3 cut(s)	52, 382, 561
FspBI	CTAG	2 cut(s)	69, 671
GluI	GCNGC	3 cut(s)	52, 382, 561
GsaI	CCCAGC	1 cut(s)	171
GsuI	CTGGAG	2 cut(s)	104, 125
HaeIII	GGCC	4 cut(s)	93, 172, 311, 645
HapII	CCGG	2 cut(s)	328, 393
HgaI	GACGC	1 cut(s)	161
Hin1II	CATG	7 cut(s)	64, 89, 211, 692, 698, 731, 807
HinfI	GANTC	4 cut(s)	73, 577, 772, 842
HpaII	CCGG	2 cut(s)	328, 393
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	3 cut(s)	457, 623, 826
Hpy188I	TCNGA	3 cut(s)	430, 604, 736
Hpy188III	TCNNGA	9 cut(s)	142, 236, 362, 473, 581, 716, 776, 836, 846
Hpy8I	GTNNAC	3 cut(s)	457, 623, 826
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	5 cut(s)	104, 182, 245, 346, 544
HpyCH4III	ACNGT	1 cut(s)	587
HpyCH4V	TGCA	3 cut(s)	14, 384, 522
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 818
HpyF3I	CTNAG	1 cut(s)	423
Hsp92II	CATG	7 cut(s)	64, 89, 211, 692, 698, 731, 807
Ksp22I	TGATCA	1 cut(s)	222
Kzo9I	GATC	4 cut(s)	222, 289, 316, 799
LmnI	GCTCC	2 cut(s)	254, 439
Lsp1109I	GCAGC	3 cut(s)	38, 368, 547
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	2 cut(s)	69, 671
MalI	GATC	4 cut(s)	224, 291, 318, 801
MboI	GATC	4 cut(s)	222, 289, 316, 799
MboII	GAAGA	1 cut(s)	591
MfeI	CAATTG	1 cut(s)	300
MhlI	GDGCHC	1 cut(s)	783
MluCI	AATT	4 cut(s)	22, 300, 615, 704
MlyI	GAGTC	2 cut(s)	82, 851
MmeI	TCCRAC	2 cut(s)	176, 237
MnlI	CCTC	8 cut(s)	83, 128, 135, 149, 172, 430, 567, 811
Mph1103I	ATGCAT	1 cut(s)	16
MroXI	GAANNNNTTC	1 cut(s)	704
MseI	TTAA	2 cut(s)	338, 744
MslI	CAYNNNNRTG	3 cut(s)	693, 699, 837
MspI	CCGG	2 cut(s)	328, 393
MspR9I	CCNGG	2 cut(s)	328, 535
MunI	CAATTG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	535
MwoI	GCNNNNNNNGC	2 cut(s)	293, 818
NciI	CCSGG	1 cut(s)	328
NdeI	CATATG	1 cut(s)	16
NdeII	GATC	4 cut(s)	222, 289, 316, 799
NlaIII	CATG	7 cut(s)	64, 89, 211, 692, 698, 731, 807
NlaIV	GGNNCC	2 cut(s)	256, 497
NsiI	ATGCAT	1 cut(s)	16
NspI	RCATGY	1 cut(s)	211
PasI	CCCWGGG	1 cut(s)	534
PceI	AGGCCT	1 cut(s)	93
PciI	ACATGT	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	704
PfeI	GAWTC	2 cut(s)	577, 772
PkrI	GCNGC	3 cut(s)	53, 383, 562
PleI	GAGTC	2 cut(s)	81, 850
PpsI	GAGTC	2 cut(s)	81, 850
PscI	ACATGT	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	783
Psp6I	CCWGG	1 cut(s)	533
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	533
PspN4I	GGNNCC	2 cut(s)	256, 497
PspPI	GGNCC	5 cut(s)	170, 359, 496, 643, 685
RsaI	GTAC	4 cut(s)	42, 458, 489, 653
RsaNI	GTAC	4 cut(s)	41, 457, 488, 652
RseI	CAYNNNNRTG	3 cut(s)	693, 699, 837
SacI	GAGCTC	1 cut(s)	783
SaqAI	TTAA	2 cut(s)	338, 744
SatI	GCNGC	3 cut(s)	52, 382, 561
Sau3AI	GATC	4 cut(s)	222, 289, 316, 799
Sau96I	GGNCC	5 cut(s)	170, 359, 496, 643, 685
ScaI	AGTACT	1 cut(s)	42
SchI	GAGTC	2 cut(s)	82, 851
ScrFI	CCNGG	2 cut(s)	328, 535
SduI	GDGCHC	1 cut(s)	783
SetI	ASST	6 cut(s)	169, 444, 456, 555, 757, 783
SfaNI	GCATC	1 cut(s)	321
SinI	GGWCC	3 cut(s)	359, 496, 685
SmiMI	CAYNNNNRTG	3 cut(s)	693, 699, 837
Sse9I	AATT	4 cut(s)	22, 300, 615, 704
SseBI	AGGCCT	1 cut(s)	93
SsiI	CCGC	4 cut(s)	287, 499, 545, 821
SspMI	CTAG	2 cut(s)	69, 671
SstI	GAGCTC	1 cut(s)	783
StuI	AGGCCT	1 cut(s)	93
StyD4I	CCNGG	2 cut(s)	326, 533
TaaI	ACNGT	1 cut(s)	587
TaqI	TCGA	2 cut(s)	150, 235
TasI	AATT	4 cut(s)	22, 300, 615, 704
TatI	WGTACW	4 cut(s)	40, 456, 487, 651
TfiI	GAWTC	2 cut(s)	577, 772
Tru1I	TTAA	2 cut(s)	338, 744
Tru9I	TTAA	2 cut(s)	338, 744
TscAI	CASTG	1 cut(s)	640
TseI	GCWGC	3 cut(s)	51, 381, 560
TspDTI	ATGAA	3 cut(s)	77, 683, 717
TspRI	CASTG	1 cut(s)	640
VpaK11BI	GGWCC	3 cut(s)	359, 496, 685
XapI	RAATTY	1 cut(s)	704
XceI	RCATGY	1 cut(s)	211
XmiI	GTMKAC	1 cut(s)	622
XmnI	GAANNNNTTC	1 cut(s)	704
XspI	CTAG	2 cut(s)	69, 671
ZrmI	AGTACT	1 cut(s)	42
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.