Rorug05G0117900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003949
Physical Location & Seq
Reverse (-)
10410902 .. 10411708
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0117900.1

Sequence Viewer

Length: 807 bp
ATGAAAAAAGCTGGCTTGCAGCCAGATCATATGTCTATAACTGGGATTTTAGTGGCATGTAGTCATGGTGAACTTGTGGAAGATGGTTGGAGAGTTTTCAAAAGCATGAAGAATGAGTATGGCCTGGAGCCAAGGCTTGAGCATTATGGTTGTATGGTTGACCTCCTTGGCCGGGCCGGTTTGCTTTCCGAAGCCTATGAATTTATAGAGAAAATGCCAATAAGGCCAAATTCTGTGATTTGGAGGACCCTTCTCGAAGCATGTGTAAATCATAACAATCTTGTGTTGGCTAAGAAAGTGAAGAAGAGGTTGAACAAGCTAGATCGTTATCATGATGGTGATTATGTGCTTTTATCTAATGTTAGGAATTCAATGAGGGCAAGGAGAGTTAACAAGAAAGCTGGTGCTAGTTCAATTAGTGTAGACCAAATCATTCATGAGTTCATTTCAGGGGATAACTCTCATCCCCAATCACAGGATATTAGAGATTTCTTAGACAGAATATTTGAAAGTATAAAAGACACGGGATATACTCCCCTTACATCGAATGTATTGCATGACATTGAAGAGGAGGAGAAGGAGCATACTCTTGGTTATCATAGTGAGAAATTGGCTGTGGCTTTTGCACTTCTGAGTGTCAAGGATACTAGGACCATTAGGGTCATGAAGAATATTCGAATCTGTTGTGACTGCCATTCTTTCATGAAGCATGTTTCAGCCAAATTTGGTAGAGAAATTATTGTTCGCGATCGAAATCGGTTCCATCATTTTATCAATGGATCATGTTCTTGTCAAGATTATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

268

Amino Acids

30.88

Weight (kDa)

8.56

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DYW_deaminase PF14432 176 - 268 2.8e-37 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 423
AccII CGCG 1 cut(s) 747
AclWI GGATC 1 cut(s) 787
AcoI YGGCCR 1 cut(s) 169
AcsI RAATTY 4 cut(s) 200, 229, 367, 722
AfiI CCNNNNNNNGG 2 cut(s) 172, 475
AgsI TTSAA 6 cut(s) 100, 313, 372, 414, 509, 566
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 3 cut(s) 11, 319, 401
AluI AGCT 3 cut(s) 11, 319, 401
AlwI GGATC 1 cut(s) 787
AoxI GGCC 4 cut(s) 121, 169, 174, 224
ApeKI GCWGC 1 cut(s) 19
ApoI RAATTY 4 cut(s) 200, 229, 367, 722
ArsI GACNNNNNNTTYG 2 cut(s) 488, 520
AspS9I GGNCC 3 cut(s) 174, 246, 651
AsuC2I CCSGG 1 cut(s) 173
AsuHPI GGTGA 2 cut(s) 80, 350
AsuII TTCGAA 1 cut(s) 676
AvaII GGWCC 2 cut(s) 246, 651
BbvI GCAGC 1 cut(s) 31
BccI CCATC 3 cut(s) 77, 329, 771
BcgI CGANNNNNNTGC 2 cut(s) 535, 569
BciT130I CCWGG 1 cut(s) 125
BciVI GTATCC 1 cut(s) 637
BcnI CCSGG 1 cut(s) 173
BfaI CTAG 3 cut(s) 320, 408, 648
BfuI GTATCC 1 cut(s) 637
BglI GCCNNNNNGGC 1 cut(s) 223
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
Bme1390I CCNGG 2 cut(s) 125, 173
Bme18I GGWCC 2 cut(s) 246, 651
BmgT120I GGNCC 3 cut(s) 174, 246, 651
BmiI GGNNCC 3 cut(s) 129, 248, 761
BmrFI CCNGG 2 cut(s) 125, 173
BmrI ACTGGG 1 cut(s) 51
BmuI ACTGGG 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 146
Bpu14I TTCGAA 1 cut(s) 676
BpuEI CTTGAG 1 cut(s) 158
BpuMI CCSGG 1 cut(s) 173
BsaBI GATNNNNATC 2 cut(s) 327, 753
BsaJI CCNNGG 2 cut(s) 131, 166
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 475
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 46
Bse8I GATNNNNATC 2 cut(s) 327, 753
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 2 cut(s) 131, 166
BseGI GGATG 1 cut(s) 463
BseJI GATNNNNATC 2 cut(s) 327, 753
BseLI CCNNNNNNNGG 2 cut(s) 172, 475
BseMII CTCAG 1 cut(s) 623
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 2 cut(s) 584, 587
BseXI GCAGC 1 cut(s) 31
Bsh1236I CGCG 1 cut(s) 747
Bsh1285I CGRYCG 1 cut(s) 751
BshFI GGCC 4 cut(s) 123, 171, 176, 226
BsiEI CGRYCG 1 cut(s) 751
BsiSI CCGG 2 cut(s) 172, 177
BslI CCNNNNNNNGG 2 cut(s) 172, 475
BsnI GGCC 4 cut(s) 123, 171, 176, 226
Bsp119I TTCGAA 1 cut(s) 676
Bsp143I GATC 4 cut(s) 25, 322, 748, 779
Bsp68I TCGCGA 1 cut(s) 747
BspANI GGCC 4 cut(s) 123, 171, 176, 226
BspCNI CTCAG 1 cut(s) 624
BspFNI CGCG 1 cut(s) 747
BspHI TCATGA 4 cut(s) 331, 436, 663, 702
BspLI GGNNCC 3 cut(s) 129, 248, 761
BspPI GGATC 1 cut(s) 787
BspT104I TTCGAA 1 cut(s) 676
BsrFI RCCGGY 1 cut(s) 176
BsrI ACTGG 1 cut(s) 46
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 2 cut(s) 131, 166
BssMI GATC 4 cut(s) 25, 322, 748, 779
BssT1I CCWWGG 2 cut(s) 131, 166
Bst2UI CCWGG 1 cut(s) 125
Bst6I CTCTTC 2 cut(s) 299, 561
BstBI TTCGAA 1 cut(s) 676
BstC8I GCNNGC 2 cut(s) 13, 17
BstDEI CTNAG 3 cut(s) 291, 493, 632
BstF5I GGATG 1 cut(s) 463
BstFNI CGCG 1 cut(s) 747
BstKTI GATC 4 cut(s) 28, 325, 751, 782
BstMBI GATC 4 cut(s) 25, 322, 748, 779
BstMCI CGRYCG 1 cut(s) 751
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstNI CCWGG 1 cut(s) 125
BstNSI RCATGY 3 cut(s) 60, 264, 713
BstSCI CCNGG 2 cut(s) 123, 171
BstUI CGCG 1 cut(s) 747
BstV1I GCAGC 1 cut(s) 31
BsuI GTATCC 1 cut(s) 637
BsuRI GGCC 4 cut(s) 123, 171, 176, 226
BtsCI GGATG 1 cut(s) 463
BtuMI TCGCGA 1 cut(s) 747
Cac8I GCNNGC 2 cut(s) 13, 17
CciI TCATGA 4 cut(s) 331, 436, 663, 702
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 3 cut(s) 174, 246, 651
DdeI CTNAG 3 cut(s) 291, 493, 632
DpnI GATC 4 cut(s) 27, 324, 750, 781
DpnII GATC 4 cut(s) 25, 322, 748, 779
EaeI YGGCCR 1 cut(s) 169
Eam1104I CTCTTC 2 cut(s) 299, 561
EarI CTCTTC 2 cut(s) 299, 561
Eco130I CCWWGG 2 cut(s) 131, 166
Eco47I GGWCC 2 cut(s) 246, 651
EcoO109I RGGNCCY 1 cut(s) 246
EcoRI GAATTC 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 123
EcoT14I CCWWGG 2 cut(s) 131, 166
ErhI CCWWGG 2 cut(s) 131, 166
FauNDI CATATG 1 cut(s) 30
FblI GTMKAC 1 cut(s) 423
Fnu4HI GCNGC 1 cut(s) 20
FokI GGATG 1 cut(s) 450
Fsp4HI GCNGC 1 cut(s) 20
FspBI CTAG 3 cut(s) 320, 408, 648
GluI GCNGC 1 cut(s) 20
GsuI CTGGAG 1 cut(s) 146
HaeIII GGCC 4 cut(s) 123, 171, 176, 226
HapII CCGG 2 cut(s) 172, 177
HincII GTYRAC 2 cut(s) 160, 391
HindII GTYRAC 2 cut(s) 160, 391
HinfI GANTC 1 cut(s) 678
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 2 cut(s) 172, 177
HphI GGTGA 2 cut(s) 80, 350
Hpy166II GTNNAC 4 cut(s) 71, 160, 391, 424
Hpy188I TCNGA 2 cut(s) 190, 633
Hpy188III TCNNGA 7 cut(s) 254, 332, 437, 664, 703, 746, 794
Hpy8I GTNNAC 4 cut(s) 71, 160, 391, 424
HpyAV CCTTC 2 cut(s) 260, 571
HpyCH4V TGCA 3 cut(s) 19, 556, 626
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
HpyF3I CTNAG 3 cut(s) 291, 493, 632
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 4 cut(s) 25, 322, 748, 779
LmnI GCTCC 2 cut(s) 127, 580
LpnPI CCDG 9 cut(s) 27, 36, 110, 137, 185, 190, 387, 435, 461
Lsp1109I GCAGC 1 cut(s) 31
MaeI CTAG 3 cut(s) 320, 408, 648
MaeIII GTNAC 1 cut(s) 686
MalI GATC 4 cut(s) 27, 324, 750, 781
MboI GATC 4 cut(s) 25, 322, 748, 779
MboII GAAGA 6 cut(s) 92, 121, 313, 316, 578, 679
MluCI AATT 7 cut(s) 200, 229, 367, 414, 608, 722, 735
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 6 cut(s) 173, 237, 300, 369, 562, 565
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 1 cut(s) 336
MspI CCGG 2 cut(s) 172, 177
MspR9I CCNGG 2 cut(s) 125, 173
MvaI CCWGG 1 cut(s) 125
MvnI CGCG 1 cut(s) 747
MwoI GCNNNNNNNGC 1 cut(s) 223
NciI CCSGG 1 cut(s) 173
NdeI CATATG 1 cut(s) 30
NdeII GATC 4 cut(s) 25, 322, 748, 779
NlaIV GGNNCC 3 cut(s) 129, 248, 761
NmuCI GTSAC 1 cut(s) 686
NruI TCGCGA 1 cut(s) 747
NspI RCATGY 3 cut(s) 60, 264, 713
NspV TTCGAA 1 cut(s) 676
PagI TCATGA 4 cut(s) 331, 436, 663, 702
PfeI GAWTC 1 cut(s) 678
PkrI GCNGC 1 cut(s) 21
Ple19I CGATCG 1 cut(s) 751
PpuMI RGGWCCY 1 cut(s) 246
Psp5II RGGWCCY 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 3 cut(s) 129, 248, 761
PspPI GGNCC 3 cut(s) 174, 246, 651
PspPPI RGGWCCY 1 cut(s) 246
PvuI CGATCG 1 cut(s) 751
RruI TCGCGA 1 cut(s) 747
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 4 cut(s) 25, 322, 748, 779
Sau96I GGNCC 3 cut(s) 174, 246, 651
ScrFI CCNGG 2 cut(s) 125, 173
SetI ASST 5 cut(s) 13, 165, 311, 321, 403
SfuI TTCGAA 1 cut(s) 676
SinI GGWCC 2 cut(s) 246, 651
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 7 cut(s) 200, 229, 367, 414, 608, 722, 735
SspI AATATT 2 cut(s) 504, 673
SspMI CTAG 3 cut(s) 320, 408, 648
StyD4I CCNGG 2 cut(s) 123, 171
StyI CCWWGG 2 cut(s) 131, 166
TaqI TCGA 4 cut(s) 255, 545, 676, 751
TasI AATT 7 cut(s) 200, 229, 367, 414, 608, 722, 735
TfiI GAWTC 1 cut(s) 678
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TseFI GTSAC 1 cut(s) 686
TseI GCWGC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 686
TspDTI ATGAA 8 cut(s) 17, 122, 213, 425, 433, 680, 691, 719
VpaK11BI GGWCC 2 cut(s) 246, 651
XapI RAATTY 4 cut(s) 200, 229, 367, 722
XceI RCATGY 3 cut(s) 60, 264, 713
XmiI GTMKAC 1 cut(s) 423
XspI CTAG 3 cut(s) 320, 408, 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.