Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003949

Physical Location & Seq

Genomic Coordinates Forward (+)

79593411 .. 79605444

Gene Structure 12034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG566900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGTGCTTTTCTGATGCTAATTGACGCCATACTCTTTTTCTTCTTCATCGTGACGGCGACGTCCCCGATGGTGGACGCGCAGCTAGTTTTGCCTCTGAGCCTCTTTCAGGAGTGGATGGTGGAGTACAAGAATCGGTACGTCGGCGGTTCAACGACTATTGCTATGTGGAGAAGCCTCATTTCTTTATTGGTCTCATCTTGGTTGAACTTGTATTCCAGTGGCCTCTTGCCCTTGCTAACTTGTATGGGATGTTGGCCGGAAAGTCGTGGTACAACACCACTTGCTTGGTCTATGATTGGAAGTTTGGGTCATGTCTACCTCAAGCAATCTACTATGAACTGTCGCACAACAGGATGGTTGCAATTGAATGTGTTAACACACCTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2781

Protein Analysis

130

Amino Acids

14.65

Weight (kDa)

6.7

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06361
malus_domestica	MD08G1226000.v1.1
pyrus_communis	pycom05g24160
rosa_chinensis	RchiOBHm_Chr2g0159691 RchiOBHm_Chr2g0168161 RchiOBHm_Chr4g0433811 RchiOBHm_Chr5g0018671 RchiOBHm_Chr5g0082331
rosa_multiflora	Rmu_sc0000698.1_g000050
rosa_roxburghii	Rroxscaffold_1G00019890 Rroxscaffold_1G00030050 Rroxscaffold_1G00032950 Rroxscaffold_5G00335810 Rroxscaffold_5G00345660 Rroxscaffold_5G00345670 Rroxscaffold_6G00401880 Rroxscaffold_6G00401890 Rroxscaffold_7G00194550
rosa_rugosa	Rorug04G0046200 Rorug04G0124800 Rorug04G0335500 Rorug04G0429300 Rorug05G0081300 Rorug05G0117900 Rorug05G0181600 Rorug05G0438900 Rorug05G0452900 Rorug05G0506200.1 Rorug06G0093700 Rorug06G0458300 Rorug07G0106200 Rorug07G0121100
rosa_samantha	Rh2DG566900 Rh3CG025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	61
AatII	GACGTC	1 cut(s)	65
AccI	GTMKAC	1 cut(s)	318
AccII	CGCG	1 cut(s)	80
AciI	CCGC	1 cut(s)	147
AcoI	YGGCCR	1 cut(s)	257
AcyI	GRCGYC	2 cut(s)	27, 62
AfaI	GTAC	3 cut(s)	128, 140, 274
AfiI	CCNNNNNNNGG	2 cut(s)	73, 109
AgsI	TTSAA	4 cut(s)	153, 208, 370, 389
AloI	GAACNNNNNNTCC	2 cut(s)	200, 232
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
Alw26I	GTCTC	1 cut(s)	199
AoxI	GGCC	2 cut(s)	223, 257
ApeKI	GCWGC	1 cut(s)	82
AspLEI	GCGC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	3 cut(s)	64, 112, 351
BceAI	ACGGC	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	1 cut(s)	86
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
BmsI	GCATC	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	308
BsaHI	GRCGYC	2 cut(s)	27, 62
BsaI	GGTCTC	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 109
Bse1I	ACTGG	1 cut(s)	219
BseGI	GGATG	3 cut(s)	123, 257, 362
BseLI	CCNNNNNNNGG	2 cut(s)	73, 109
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	94
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	225, 259
BsiSI	CCGG	1 cut(s)	260
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	2 cut(s)	73, 109
BsmAI	GTCTC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	2 cut(s)	225, 259
Bso31I	GGTCTC	1 cut(s)	199
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	2 cut(s)	225, 259
BspCNI	CTCAG	1 cut(s)	90
BspFNI	CGCG	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	219
BssNI	GRCGYC	2 cut(s)	27, 62
Bst4CI	ACNGT	1 cut(s)	344
BstACI	GRCGYC	2 cut(s)	27, 62
BstDEI	CTNAG	1 cut(s)	98
BstENI	CCTNNNNNAGG	1 cut(s)	107
BstF5I	GGATG	3 cut(s)	123, 257, 362
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	94
BstXI	CCANNNNNNTGG	1 cut(s)	288
BsuRI	GGCC	2 cut(s)	225, 259
BtsCI	GGATG	3 cut(s)	123, 257, 362
BtsIMutI	CAGTG	1 cut(s)	226
CfoI	GCGC	1 cut(s)	82
CseI	GACGC	2 cut(s)	35, 86
Csp6I	GTAC	3 cut(s)	127, 139, 273
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	5 cut(s)	85, 102, 177, 225, 259
CviKI_1	RGCY	5 cut(s)	85, 102, 177, 225, 259
CviQI	GTAC	3 cut(s)	127, 139, 273
DdeI	CTNAG	1 cut(s)	98
DrdI	GACNNNNNNGTC	1 cut(s)	61
DseDI	GACNNNNNNGTC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	257
Eco31I	GGTCTC	1 cut(s)	199
EcoNI	CCTNNNNNAGG	1 cut(s)	107
FaeI	CATG	1 cut(s)	317
FaiI	YATR	6 cut(s)	32, 167, 248, 296, 315, 338
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	1 cut(s)	83
FokI	GGATG	3 cut(s)	130, 264, 369
Fsp4HI	GCNGC	1 cut(s)	83
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	1 cut(s)	83
HaeIII	GGCC	2 cut(s)	225, 259
HapII	CCGG	1 cut(s)	260
HgaI	GACGC	2 cut(s)	35, 86
HhaI	GCGC	1 cut(s)	82
Hin1I	GRCGYC	2 cut(s)	27, 62
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HinfI	GANTC	1 cut(s)	133
HpaI	GTTAAC	1 cut(s)	378
HpaII	CCGG	1 cut(s)	260
Hpy166II	GTNNAC	3 cut(s)	76, 319, 378
Hpy188I	TCNGA	2 cut(s)	15, 99
Hpy188III	TCNNGA	2 cut(s)	52, 110
Hpy8I	GTNNAC	3 cut(s)	76, 319, 378
Hpy99I	CGWCG	2 cut(s)	64, 146
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	2 cut(s)	62, 141
HpyCH4V	TGCA	1 cut(s)	364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
HpyF3I	CTNAG	1 cut(s)	98
HpySE526I	ACGT	2 cut(s)	62, 141
Hsp92I	GRCGYC	2 cut(s)	27, 62
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	1 cut(s)	80
KspAI	GTTAAC	1 cut(s)	378
LpnPI	CCDG	4 cut(s)	95, 232, 273, 339
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	6
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	2 cut(s)	62, 141
MaeIII	GTNAC	1 cut(s)	52
MboII	GAAGA	2 cut(s)	34, 37
MfeI	CAATTG	1 cut(s)	365
MluCI	AATT	2 cut(s)	21, 365
MnlI	CCTC	5 cut(s)	105, 113, 188, 236, 332
MseI	TTAA	1 cut(s)	377
MspI	CCGG	1 cut(s)	260
MunI	CAATTG	1 cut(s)	365
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	317
NmuCI	GTSAC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	84
RsaI	GTAC	3 cut(s)	128, 140, 274
RsaNI	GTAC	3 cut(s)	127, 139, 273
SaqAI	TTAA	1 cut(s)	377
SatI	GCNGC	1 cut(s)	83
SetI	ASST	5 cut(s)	65, 87, 144, 324, 387
SfaNI	GCATC	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	2 cut(s)	21, 365
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	2 cut(s)	65, 144
TasI	AATT	2 cut(s)	21, 365
TatI	WGTACW	1 cut(s)	126
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	1 cut(s)	377
Tru9I	TTAA	1 cut(s)	377
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	37, 353
TspRI	CASTG	1 cut(s)	226
XagI	CCTNNNNNAGG	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	318
XspI	CTAG	1 cut(s)	86
ZraI	GACGTC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.