Rorug04G0335500

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000504
Physical Location & Seq
Reverse (-)
50946604 .. 50948859
2256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0335500.1

Sequence Viewer

Length: 1293 bp
ATGAATATTGAAGTTGAATTGATCTCTGAGGAGATTATCAAACCATCTTCCTCAACCCCTGATGATTTTCGCCATTACCAGCTTTCCTTCCTTGATCAGTTATCTCCTCCAGTCTATAACCCTTTGGTCCTCTTTTATGAATTCAATGACGAGACGATGCCTAGCGTTACTGAAATATCCAACCACCTTAAGAAGTCCTTAGCCGAGGTCTTAACCCTTTTCTACCCATTAGCGGGACGAATCACAGACAACAAATATGTAGATTGCAATGATGAGGGCATTCCCTATGTTGAAGCTCATGTTAAGTGTGAACTTTCTGAAGTTCTCAACAATCCAGTCCCTGGTGAATTCAGTAAGTTCATGCCATTTGAACTAGATAATATTGCTAATAAGCTTCCTCTAGGCGTCCAGCTTAACATCTTTGAATGTGGAGGGTTTGCTATTGGTCACTGTATTTCTCACAAGCTAGCAGATGGATTATCTCATTTCATGTTCAGCAAAACTTGGGCTGCCACTGCCCTCGGAGATCAAGCCAAAATTGAGCCTCCGGAGTTTATTTCAGCAAAACTCTTCCCACCAAGGGATTTTACAGCCTATGATGCAGGCCTTGGCATCACAAGGAATAAAGTAGCAAAGAGGTTTGTGTTTAGTGCATCTATGATAGAGGCTCTCAGAGAAAAATATCAGAACAGCGAAGGCCTAGAAAACCAGAAACGCCCATCACGTGTTGATGCTTTGTCGGCTTTCATATGGAGTCGATATGTGGCCAACACCAAGGATACAGGGCCTGCTGAGAAGTTTTACATGGTGCTCCATTCTGTGAACCTGCGTCCAAGGTTTGACCCCTCGTTGCCGCACCATTCTTTTGGAAATCTTTATCGTGCTGCCATGACAGCTCCTTTCTTAAGTAGCGGGGAAGAATGCTATGGCTTGGTGATGAGGCAGGTACGAGAAGAAATAGACAAGATTGACAGTCACTACATGAAAGGTCTGCAACAAGGTGCTGAGCACTTGAGTGAGCTTAATGAAAGTGTTGATAGTGTTATCAGTGGAGAGCTGATTACATTTAGCTTCAGTAGTTTCTGCAGATTTCCTCTGTATGATAATGATTTTGGTTGGGGGAAGCCTACGTGGGTATCGTCACCACCATTGACCTTCAAGAACCTAGTGGTTTTCATGGATACCAAAGAGGATGATGGAATAGAGGCATATATTAGTTTGGAGGAGGAAGTCATGGTTAAGTTTGAAACTGGTATTGAGTTCTTGGCTTATGCGTCTCCAAGTGGGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

430

Amino Acids

48.49

Weight (kDa)

4.93

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 4 - 421 1.4e-81 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 834, 934
AccB7I CCANNNNNTGG 1 cut(s) 341
AccIII TCCGGA 1 cut(s) 547
AciI CCGC 3 cut(s) 233, 854, 912
AcoI YGGCCR 1 cut(s) 765
AcsI RAATTY 2 cut(s) 140, 347
AcuI CTGAAG 2 cut(s) 339, 1057
AcvI CACGTG 1 cut(s) 725
AcyI GRCGYC 1 cut(s) 405
AfaI GTAC 1 cut(s) 948
AfiI CCNNNNNNNGG 4 cut(s) 232, 233, 341, 580
AflII CTTAAG 2 cut(s) 188, 904
AflIII ACRYGT 1 cut(s) 724
AgsI TTSAA 8 cut(s) 11, 17, 145, 293, 371, 425, 1159, 1247
AjnI CCWGG 1 cut(s) 340
AleI CACNNNNGTG 1 cut(s) 1014
AluBI AGCT 9 cut(s) 82, 296, 394, 412, 466, 896, 1021, 1057, 1071
AluI AGCT 9 cut(s) 82, 296, 394, 412, 466, 896, 1021, 1057, 1071
Alw21I GWGCWC 2 cut(s) 813, 1011
Alw26I GTCTC 2 cut(s) 146, 1281
AlwNI CAGNNNCTG 2 cut(s) 341, 788
Aor13HI TCCGGA 1 cut(s) 547
AoxI GGCC 4 cut(s) 604, 697, 765, 785
ApeKI GCWGC 2 cut(s) 509, 884
ApoI RAATTY 2 cut(s) 140, 347
AspS9I GGNCC 2 cut(s) 127, 785
AsuHPI GGTGA 3 cut(s) 356, 946, 1134
AsuNHI GCTAGC 1 cut(s) 466
AvaII GGWCC 1 cut(s) 127
BaeI ACNNNNGTAYC 2 cut(s) 1119, 1152
BalI TGGCCA 1 cut(s) 767
BbrPI CACGTG 1 cut(s) 725
Bbv12I GWGCWC 2 cut(s) 813, 1011
BbvI GCAGC 2 cut(s) 496, 871
BccI CCATC 4 cut(s) 52, 467, 727, 1190
BciT130I CCWGG 1 cut(s) 342
BciVI GTATCC 2 cut(s) 772, 1174
BclI TGATCA 1 cut(s) 94
BcoDI GTCTC 2 cut(s) 146, 1281
BfaI CTAG 6 cut(s) 162, 374, 401, 467, 701, 1166
BfmI CTRYAG 1 cut(s) 1084
BfrI CTTAAG 2 cut(s) 188, 904
BfuAI ACCTGC 2 cut(s) 834, 934
BfuI GTATCC 2 cut(s) 772, 1174
BisI GCNGC 3 cut(s) 510, 854, 885
BlpI GCTNAGC 1 cut(s) 1005
BlsI GCNGC 3 cut(s) 511, 855, 886
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 2 cut(s) 127, 785
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 5 cut(s) 147, 589, 621, 662, 721
BmtI GCTAGC 1 cut(s) 470
BpmI CTGGAG 1 cut(s) 93
Bpu10I CCTNAGC 1 cut(s) 199
Bpu1102I GCTNAGC 1 cut(s) 1005
BpuEI CTTGAG 1 cut(s) 1033
BsaAI YACGTR 2 cut(s) 725, 1131
BsaHI GRCGYC 1 cut(s) 405
BsaJI CCNNGG 7 cut(s) 204, 340, 520, 578, 607, 774, 833
BsaWI WCCGGW 1 cut(s) 547
Bsc4I CCNNNNNNNGG 4 cut(s) 232, 233, 341, 580
Bse1I ACTGG 3 cut(s) 110, 335, 1255
Bse3DI GCAATG 1 cut(s) 274
BseAI TCCGGA 1 cut(s) 547
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 7 cut(s) 204, 340, 520, 578, 607, 774, 833
BseGI GGATG 1 cut(s) 1198
BseLI CCNNNNNNNGG 4 cut(s) 232, 233, 341, 580
BseMI GCAATG 1 cut(s) 274
BseMII CTCAG 4 cut(s) 18, 685, 783, 996
BseNI ACTGG 3 cut(s) 110, 335, 1255
BseRI GAGGAG 3 cut(s) 44, 96, 1238
BseXI GCAGC 2 cut(s) 496, 871
BshFI GGCC 4 cut(s) 606, 699, 767, 787
BsiHKAI GWGCWC 2 cut(s) 813, 1011
BsiSI CCGG 1 cut(s) 548
BslFI GGGAC 2 cut(s) 249, 323
BslI CCNNNNNNNGG 4 cut(s) 232, 233, 341, 580
BsmAI GTCTC 2 cut(s) 146, 1281
BsmBI CGTCTC 2 cut(s) 146, 1281
BsmFI GGGAC 2 cut(s) 249, 323
BsmI GAATGC 2 cut(s) 279, 926
BsnI GGCC 4 cut(s) 606, 699, 767, 787
Bsp1286I GDGCHC 2 cut(s) 813, 1011
Bsp13I TCCGGA 1 cut(s) 547
Bsp143I GATC 3 cut(s) 21, 94, 526
Bsp1720I GCTNAGC 1 cut(s) 1005
BspACI CCGC 3 cut(s) 233, 854, 912
BspANI GGCC 4 cut(s) 606, 699, 767, 787
BspCNI CTCAG 4 cut(s) 19, 684, 784, 997
BspEI TCCGGA 1 cut(s) 547
BspMAI CTGCAG 1 cut(s) 1088
BspMI ACCTGC 2 cut(s) 834, 934
BspOI GCTAGC 1 cut(s) 470
BspTI CTTAAG 2 cut(s) 188, 904
BsrDI GCAATG 1 cut(s) 274
BsrI ACTGG 3 cut(s) 110, 335, 1255
BssECI CCNNGG 7 cut(s) 204, 340, 520, 578, 607, 774, 833
BssMI GATC 3 cut(s) 21, 94, 526
BssNI GRCGYC 1 cut(s) 405
BssT1I CCWWGG 4 cut(s) 578, 607, 774, 833
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 2 cut(s) 452, 974
Bst6I CTCTTC 1 cut(s) 575
BstACI GRCGYC 1 cut(s) 405
BstAFI CTTAAG 2 cut(s) 188, 904
BstBAI YACGTR 2 cut(s) 725, 1131
BstC8I GCNNGC 3 cut(s) 468, 604, 789
BstDEI CTNAG 5 cut(s) 27, 199, 671, 792, 1005
BstF5I GGATG 1 cut(s) 1198
BstKTI GATC 3 cut(s) 24, 97, 529
BstMAI GTCTC 2 cut(s) 146, 1281
BstMBI GATC 3 cut(s) 21, 94, 526
BstMWI GCNNNNNNNGC 4 cut(s) 515, 599, 740, 893
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 1 cut(s) 1084
BstV1I GCAGC 2 cut(s) 496, 871
BstXI CCANNNNNNTGG 1 cut(s) 866
BsuI GTATCC 2 cut(s) 772, 1174
BsuRI GGCC 4 cut(s) 606, 699, 767, 787
BtsCI GGATG 1 cut(s) 1198
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 3 cut(s) 448, 513, 1054
BveI ACCTGC 2 cut(s) 834, 934
Cac8I GCNNGC 3 cut(s) 468, 604, 789
CaiI CAGNNNCTG 2 cut(s) 341, 788
Cfr13I GGNCC 2 cut(s) 127, 785
CseI GACGC 3 cut(s) 394, 818, 1263
Csp6I GTAC 1 cut(s) 947
CviAII CATG 8 cut(s) 299, 361, 490, 805, 889, 982, 1177, 1234
CviQI GTAC 1 cut(s) 947
DdeI CTNAG 5 cut(s) 27, 199, 671, 792, 1005
DpnI GATC 3 cut(s) 23, 96, 528
DpnII GATC 3 cut(s) 21, 94, 526
EaeI YGGCCR 1 cut(s) 765
Eam1104I CTCTTC 1 cut(s) 575
EarI CTCTTC 1 cut(s) 575
Eco130I CCWWGG 4 cut(s) 578, 607, 774, 833
Eco147I AGGCCT 2 cut(s) 606, 699
Eco47I GGWCC 1 cut(s) 127
Eco57I CTGAAG 2 cut(s) 339, 1057
Eco72I CACGTG 1 cut(s) 725
EcoO109I RGGNCCY 1 cut(s) 785
EcoRI GAATTC 2 cut(s) 140, 347
EcoRII CCWGG 1 cut(s) 340
EcoT14I CCWWGG 4 cut(s) 578, 607, 774, 833
ErhI CCWWGG 4 cut(s) 578, 607, 774, 833
Esp3I CGTCTC 2 cut(s) 146, 1281
FaeI CATG 8 cut(s) 302, 364, 493, 808, 892, 985, 1180, 1237
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FaqI GGGAC 2 cut(s) 249, 323
FatI CATG 8 cut(s) 298, 360, 489, 804, 888, 981, 1176, 1233
FauI CCCGC 2 cut(s) 226, 905
FauNDI CATATG 1 cut(s) 749
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 3 cut(s) 510, 854, 885
FokI GGATG 1 cut(s) 1205
Fsp4HI GCNGC 3 cut(s) 510, 854, 885
FspBI CTAG 6 cut(s) 162, 374, 401, 467, 701, 1166
GluI GCNGC 3 cut(s) 510, 854, 885
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 4 cut(s) 606, 699, 767, 787
HapII CCGG 1 cut(s) 548
HgaI GACGC 3 cut(s) 394, 818, 1263
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 8 cut(s) 302, 364, 493, 808, 892, 985, 1180, 1237
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 2 cut(s) 240, 754
HpaII CCGG 1 cut(s) 548
HphI GGTGA 3 cut(s) 356, 946, 1134
Hpy166II GTNNAC 2 cut(s) 311, 823
Hpy188I TCNGA 5 cut(s) 28, 319, 524, 674, 687
Hpy188III TCNNGA 2 cut(s) 548, 1159
Hpy8I GTNNAC 2 cut(s) 311, 823
HpyAV CCTTC 3 cut(s) 97, 689, 1165
HpyCH4III ACNGT 2 cut(s) 452, 974
HpyCH4IV ACGT 2 cut(s) 724, 1130
HpyCH4V TGCA 5 cut(s) 267, 602, 653, 994, 1086
HpyF10VI GCNNNNNNNGC 4 cut(s) 515, 599, 740, 893
HpyF3I CTNAG 5 cut(s) 27, 199, 671, 792, 1005
HpySE526I ACGT 2 cut(s) 724, 1130
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 8 cut(s) 302, 364, 493, 808, 892, 985, 1180, 1237
Kpn2I TCCGGA 1 cut(s) 547
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 3 cut(s) 21, 94, 526
LmnI GCTCC 2 cut(s) 816, 901
Lsp1109I GCAGC 2 cut(s) 496, 871
LweI GCATC 5 cut(s) 147, 589, 621, 662, 721
MaeI CTAG 6 cut(s) 162, 374, 401, 467, 701, 1166
MaeII ACGT 2 cut(s) 724, 1130
MaeIII GTNAC 4 cut(s) 166, 446, 974, 1140
MalI GATC 3 cut(s) 23, 96, 528
MboI GATC 3 cut(s) 21, 94, 526
MboII GAAGA 4 cut(s) 39, 562, 929, 965
MhlI GDGCHC 2 cut(s) 813, 1011
MlsI TGGCCA 1 cut(s) 767
MluCI AATT 4 cut(s) 17, 140, 347, 537
MluNI TGGCCA 1 cut(s) 767
MlyI GAGTC 1 cut(s) 763
MmeI TCCRAC 1 cut(s) 204
Mox20I TGGCCA 1 cut(s) 767
MroI TCCGGA 1 cut(s) 547
MscI TGGCCA 1 cut(s) 767
MseI TTAA 7 cut(s) 189, 212, 303, 414, 905, 1023, 1239
MslI CAYNNNNRTG 1 cut(s) 1014
Msp20I TGGCCA 1 cut(s) 767
MspCI CTTAAG 2 cut(s) 188, 904
MspI CCGG 1 cut(s) 548
MspR9I CCNGG 1 cut(s) 342
Mva1269I GAATGC 2 cut(s) 279, 926
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 4 cut(s) 515, 599, 740, 893
NdeI CATATG 1 cut(s) 749
NdeII GATC 3 cut(s) 21, 94, 526
NheI GCTAGC 1 cut(s) 466
NlaIII CATG 8 cut(s) 302, 364, 493, 808, 892, 985, 1180, 1237
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 3 cut(s) 446, 974, 1140
OliI CACNNNNGTG 1 cut(s) 1014
PceI AGGCCT 2 cut(s) 606, 699
PcsI WCGNNNNNNNCGW 2 cut(s) 721, 1136
PctI GAATGC 2 cut(s) 279, 926
PfeI GAWTC 1 cut(s) 240
PflMI CCANNNNNTGG 1 cut(s) 341
PkrI GCNGC 3 cut(s) 511, 855, 886
PleI GAGTC 1 cut(s) 762
PmaCI CACGTG 1 cut(s) 725
PmlI CACGTG 1 cut(s) 725
PpsI GAGTC 1 cut(s) 762
Ppu21I YACGTR 2 cut(s) 725, 1131
Psp6I CCWGG 1 cut(s) 340
PspCI CACGTG 1 cut(s) 725
PspGI CCWGG 1 cut(s) 340
PspPI GGNCC 2 cut(s) 127, 785
PstI CTGCAG 1 cut(s) 1088
PstNI CAGNNNCTG 2 cut(s) 341, 788
RsaI GTAC 1 cut(s) 948
RsaNI GTAC 1 cut(s) 947
RseI CAYNNNNRTG 1 cut(s) 1014
SaqAI TTAA 7 cut(s) 189, 212, 303, 414, 905, 1023, 1239
SatI GCNGC 3 cut(s) 510, 854, 885
Sau3AI GATC 3 cut(s) 21, 94, 526
Sau96I GGNCC 2 cut(s) 127, 785
SchI GAGTC 1 cut(s) 763
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 2 cut(s) 813, 1011
SfaNI GCATC 5 cut(s) 147, 589, 621, 662, 721
SfcI CTRYAG 1 cut(s) 1084
SinI GGWCC 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 1014
SmlI CTYRAG 3 cut(s) 188, 904, 1012
SmoI CTYRAG 3 cut(s) 188, 904, 1012
Sse9I AATT 4 cut(s) 17, 140, 347, 537
SseBI AGGCCT 2 cut(s) 606, 699
SsiI CCGC 3 cut(s) 233, 854, 912
SspI AATATT 2 cut(s) 7, 382
SspMI CTAG 6 cut(s) 162, 374, 401, 467, 701, 1166
StuI AGGCCT 2 cut(s) 606, 699
StyD4I CCNGG 1 cut(s) 340
StyI CCWWGG 4 cut(s) 578, 607, 774, 833
TaaI ACNGT 2 cut(s) 452, 974
TaiI ACGT 2 cut(s) 727, 1133
TaqI TCGA 1 cut(s) 757
TasI AATT 4 cut(s) 17, 140, 347, 537
TauI GCSGC 1 cut(s) 856
TfiI GAWTC 1 cut(s) 240
Tru1I TTAA 7 cut(s) 189, 212, 303, 414, 905, 1023, 1239
Tru9I TTAA 7 cut(s) 189, 212, 303, 414, 905, 1023, 1239
TscAI CASTG 3 cut(s) 455, 520, 1054
TseFI GTSAC 3 cut(s) 446, 974, 1140
TseI GCWGC 2 cut(s) 509, 884
Tsp45I GTSAC 3 cut(s) 446, 974, 1140
TspDTI ATGAA 8 cut(s) 17, 153, 349, 478, 736, 998, 1041, 1165
TspRI CASTG 3 cut(s) 455, 520, 1054
Van91I CCANNNNNTGG 1 cut(s) 341
Vha464I CTTAAG 2 cut(s) 188, 904
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 2 cut(s) 140, 347
XspI CTAG 6 cut(s) 162, 374, 401, 467, 701, 1166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.