Rh4AG386500

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000504
Physical Location & Seq
Forward (+)
69297214 .. 69297634
421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG386500.1

Sequence Viewer

Length: 336 bp
ATGACTTTGAGTGATACTACTAGCCGCGGTGATCAAACTTACCAGGTGGAGACTCTGGAGGAGCCGGTAGAGATCAAAGCTTCAGCTGATGAAGTGTACAAGGTACTCAGCAACCAGCAGCACCTCATTCCCGAAGCCACTTCTGATCATGTACAGGAGGTTGCAGTGCATGAAGGTGACTGGGAAACTACTGGTTCTGTAAAGGTTTGGAAATACACTATAGATGGAAGAGCTGAAAGCTTCAAGGAAAAGGTGGAAATAGATGAAGCAAACAAGTCGGTAAGCCTTACAGGTGTACGTGGAAGGACACGTGCTAGAGCAGTACAGAAGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

111

Amino Acids

12.43

Weight (kDa)

5.04

Isoelectric Point (pI)

16.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 16 - 102 6.6e-29 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 27
AciI CCGC 2 cut(s) 25, 27
AcuI CTGAAG 1 cut(s) 66
AcvI CACGTG 1 cut(s) 311
AfaI GTAC 5 cut(s) 98, 105, 153, 297, 324
AflIII ACRYGT 1 cut(s) 308
AgsI TTSAA 1 cut(s) 244
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 5 cut(s) 80, 86, 233, 240, 331
AluI AGCT 5 cut(s) 80, 86, 233, 240, 331
Alw26I GTCTC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 118
AsuHPI GGTGA 2 cut(s) 41, 188
BbrPI CACGTG 1 cut(s) 311
BbvI GCAGC 1 cut(s) 130
BccI CCATC 1 cut(s) 218
BcgI CGANNNNNNTGC 2 cut(s) 258, 292
BciT130I CCWGG 1 cut(s) 44
BclI TGATCA 2 cut(s) 31, 145
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 2 cut(s) 21, 315
BfmI CTRYAG 1 cut(s) 219
BisI GCNGC 2 cut(s) 25, 119
BlsI GCNGC 2 cut(s) 26, 120
Bme1390I CCNGG 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 44
BmrI ACTGGG 1 cut(s) 190
BmuI ACTGGG 1 cut(s) 190
BpmI CTGGAG 1 cut(s) 77
BsaAI YACGTR 2 cut(s) 299, 311
BsaJI CCNNGG 1 cut(s) 25
Bse118I RCCGGY 1 cut(s) 64
Bse1I ACTGG 2 cut(s) 185, 196
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 121
BseNI ACTGG 2 cut(s) 185, 196
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 130
Bsh1236I CGCG 1 cut(s) 27
BsiSI CCGG 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 44
Bsp1407I TGTACA 2 cut(s) 96, 151
Bsp143I GATC 3 cut(s) 31, 72, 145
BspACI CCGC 2 cut(s) 25, 27
BspCNI CTCAG 1 cut(s) 120
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 63
BspQI GCTCTTC 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 64
BsrGI TGTACA 2 cut(s) 96, 151
BsrI ACTGG 2 cut(s) 185, 196
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 3 cut(s) 31, 72, 145
Bst2UI CCWGG 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 223
BstAUI TGTACA 2 cut(s) 96, 151
BstBAI YACGTR 2 cut(s) 299, 311
BstDEI CTNAG 1 cut(s) 107
BstDSI CCRYGG 1 cut(s) 25
BstFNI CGCG 1 cut(s) 27
BstKTI GATC 3 cut(s) 34, 75, 148
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 3 cut(s) 31, 72, 145
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
BstSFI CTRYAG 1 cut(s) 219
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 130
BtgI CCRYGG 1 cut(s) 25
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
Cfr10I RCCGGY 1 cut(s) 64
Cfr42I CCGCGG 1 cut(s) 28
CsiI ACCWGGT 1 cut(s) 42
Csp6I GTAC 5 cut(s) 97, 104, 152, 296, 323
CviAII CATG 2 cut(s) 149, 170
CviJI RGCY 9 cut(s) 24, 64, 80, 86, 137, 233, 240, 285, 331
CviKI_1 RGCY 9 cut(s) 24, 64, 80, 86, 137, 233, 240, 285, 331
CviQI GTAC 5 cut(s) 97, 104, 152, 296, 323
DdeI CTNAG 1 cut(s) 107
DpnI GATC 3 cut(s) 33, 74, 147
DpnII GATC 3 cut(s) 31, 72, 145
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 66
Eco72I CACGTG 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 42
FaeI CATG 2 cut(s) 152, 173
FaiI YATR 4 cut(s) 150, 171, 221, 334
FatI CATG 2 cut(s) 148, 169
FbaI TGATCA 2 cut(s) 31, 145
Fnu4HI GCNGC 2 cut(s) 25, 119
Fsp4HI GCNGC 2 cut(s) 25, 119
FspBI CTAG 2 cut(s) 21, 315
GluI GCNGC 2 cut(s) 25, 119
GsuI CTGGAG 1 cut(s) 77
HapII CCGG 1 cut(s) 65
Hin1II CATG 2 cut(s) 152, 173
HindIII AAGCTT 2 cut(s) 78, 238
HinfI GANTC 1 cut(s) 52
HpaII CCGG 1 cut(s) 65
HphI GGTGA 2 cut(s) 41, 188
Hpy166II GTNNAC 2 cut(s) 97, 296
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 56, 131
Hpy8I GTNNAC 2 cut(s) 97, 296
HpyAV CCTTC 2 cut(s) 167, 297
HpyCH4IV ACGT 2 cut(s) 298, 310
HpyCH4V TGCA 2 cut(s) 164, 169
HpyF3I CTNAG 1 cut(s) 107
HpySE526I ACGT 2 cut(s) 298, 310
Hsp92II CATG 2 cut(s) 152, 173
Ksp22I TGATCA 2 cut(s) 31, 145
KspI CCGCGG 1 cut(s) 28
Kzo9I GATC 3 cut(s) 31, 72, 145
LguI GCTCTTC 1 cut(s) 223
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 9 cut(s) 29, 41, 56, 78, 128, 140, 166, 177, 276
Lsp1109I GCAGC 1 cut(s) 130
MabI ACCWGGT 1 cut(s) 42
MaeI CTAG 2 cut(s) 21, 315
MaeII ACGT 2 cut(s) 298, 310
MaeIII GTNAC 1 cut(s) 176
MalI GATC 3 cut(s) 33, 74, 147
MboI GATC 3 cut(s) 31, 72, 145
MboII GAAGA 1 cut(s) 240
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 3 cut(s) 52, 134, 151
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 2 cut(s) 27, 86
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
MvnI CGCG 1 cut(s) 27
NdeII GATC 3 cut(s) 31, 72, 145
NlaIII CATG 2 cut(s) 152, 173
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 223
PkrI GCNGC 2 cut(s) 26, 120
PleI GAGTC 1 cut(s) 46
PmaCI CACGTG 1 cut(s) 311
PmlI CACGTG 1 cut(s) 311
PpsI GAGTC 1 cut(s) 46
Ppu21I YACGTR 2 cut(s) 299, 311
Psp6I CCWGG 1 cut(s) 42
PspCI CACGTG 1 cut(s) 311
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 63
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 5 cut(s) 98, 105, 153, 297, 324
RsaNI GTAC 5 cut(s) 97, 104, 152, 296, 323
RseI CAYNNNNRTG 1 cut(s) 174
SacII CCGCGG 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 223
SatI GCNGC 2 cut(s) 25, 119
Sau3AI GATC 3 cut(s) 31, 72, 145
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 44
SexAI ACCWGGT 1 cut(s) 42
SfcI CTRYAG 1 cut(s) 219
Sfr303I CCGCGG 1 cut(s) 28
SgrBI CCGCGG 1 cut(s) 28
SmiMI CAYNNNNRTG 1 cut(s) 174
SsiI CCGC 2 cut(s) 25, 27
SspMI CTAG 2 cut(s) 21, 315
StyD4I CCNGG 1 cut(s) 42
TaiI ACGT 2 cut(s) 301, 313
TatI WGTACW 3 cut(s) 96, 151, 322
TauI GCSGC 1 cut(s) 27
TscAI CASTG 1 cut(s) 171
TseFI GTSAC 1 cut(s) 176
TseI GCWGC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 3 cut(s) 105, 186, 279
TspRI CASTG 1 cut(s) 171
XspI CTAG 2 cut(s) 21, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.