pycom16g02130

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000504
Physical Location & Seq
Reverse (-)
1345511 .. 1345750
240 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g02130.1

Sequence Viewer

Length: 240 bp
ATGGCTGTGAGTGGAGCTGGTACTTGCAAGCTGGAGACTCTGGAGGCTGAGGTAGAGATCAAAGCCAAAGCTGATCAGCTGTACAAATTCATCAGCAACAAGCACCATGACGTCCCCAAAGCAGCCTCTGATAAAATATACGATGTTACAGTACATGAAGGTGACTGGGAAACTTCTGACTCTGTCAAGCTCTGGAAATACACCGTAGGTAATATTAATAACATTCCTCTCTCCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

80

Amino Acids

8.74

Weight (kDa)

5.48

Isoelectric Point (pI)

27.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 12 - 71 2e-19 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 114
AcsI RAATTY 1 cut(s) 86
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 3 cut(s) 22, 83, 153
AluBI AGCT 5 cut(s) 17, 31, 71, 79, 190
AluI AGCT 5 cut(s) 17, 31, 71, 79, 190
Alw26I GTCTC 1 cut(s) 29
AlwNI CAGNNNCTG 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 86
AseI ATTAAT 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 173
BbvCI CCTCAGC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 134
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 29
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
BmrI ACTGGG 1 cut(s) 175
BmuI ACTGGG 1 cut(s) 175
BpmI CTGGAG 2 cut(s) 53, 62
Bpu10I CCTNAGC 1 cut(s) 48
BsaHI GRCGYC 1 cut(s) 111
Bse1I ACTGG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 223
BseXI GCAGC 1 cut(s) 134
BslFI GGGAC 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 98
Bsp1407I TGTACA 1 cut(s) 81
Bsp143I GATC 2 cut(s) 57, 73
BspCNI CTCAG 1 cut(s) 40
BsrGI TGTACA 1 cut(s) 81
BsrI ACTGG 1 cut(s) 170
BssMI GATC 2 cut(s) 57, 73
BssNI GRCGYC 1 cut(s) 111
Bst4CI ACNGT 2 cut(s) 151, 205
BstACI GRCGYC 1 cut(s) 111
BstAUI TGTACA 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 29
BstDEI CTNAG 1 cut(s) 48
BstKTI GATC 2 cut(s) 60, 76
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 2 cut(s) 57, 73
BstV1I GCAGC 1 cut(s) 134
Cac8I GCNNGC 1 cut(s) 29
CaiI CAGNNNCTG 1 cut(s) 128
Csp6I GTAC 3 cut(s) 21, 82, 152
CviAII CATG 2 cut(s) 107, 155
CviJI RGCY 9 cut(s) 5, 17, 31, 47, 65, 71, 79, 125, 190
CviKI_1 RGCY 9 cut(s) 5, 17, 31, 47, 65, 71, 79, 125, 190
CviQI GTAC 3 cut(s) 21, 82, 152
DdeI CTNAG 1 cut(s) 48
DpnI GATC 2 cut(s) 59, 75
DpnII GATC 2 cut(s) 57, 73
FaeI CATG 2 cut(s) 110, 158
FaiI YATR 3 cut(s) 108, 139, 156
FaqI GGGAC 1 cut(s) 98
FatI CATG 2 cut(s) 106, 154
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 123
GluI GCNGC 1 cut(s) 123
GsuI CTGGAG 2 cut(s) 53, 62
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 2 cut(s) 110, 158
HinfI GANTC 2 cut(s) 37, 179
HphI GGTGA 1 cut(s) 173
Hpy188I TCNGA 2 cut(s) 130, 178
Hpy188III TCNNGA 2 cut(s) 41, 193
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 2 cut(s) 151, 205
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 27
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 2 cut(s) 110, 158
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 2 cut(s) 57, 73
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 5 cut(s) 3, 17, 26, 151, 178
Lsp1109I GCAGC 1 cut(s) 134
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 2 cut(s) 145, 161
MalI GATC 2 cut(s) 59, 75
MboI GATC 2 cut(s) 57, 73
MluCI AATT 1 cut(s) 86
MlyI GAGTC 2 cut(s) 31, 173
MnlI CCTC 4 cut(s) 37, 43, 136, 237
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 79
NdeII GATC 2 cut(s) 57, 73
NlaIII CATG 2 cut(s) 110, 158
NmuCI GTSAC 1 cut(s) 161
PflFI GACNNNGTC 1 cut(s) 182
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 2 cut(s) 31, 173
PpsI GAGTC 2 cut(s) 31, 173
PshBI ATTAAT 1 cut(s) 216
PstNI CAGNNNCTG 1 cut(s) 128
PsyI GACNNNGTC 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 79
RsaI GTAC 3 cut(s) 22, 83, 153
RsaNI GTAC 3 cut(s) 21, 82, 152
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 2 cut(s) 57, 73
SchI GAGTC 2 cut(s) 31, 173
SetI ASST 9 cut(s) 19, 33, 54, 73, 81, 114, 163, 192, 211
SmiMI CAYNNNNRTG 1 cut(s) 159
Sse9I AATT 1 cut(s) 86
SspI AATATT 1 cut(s) 214
TaaI ACNGT 2 cut(s) 151, 205
TaiI ACGT 1 cut(s) 114
TasI AATT 1 cut(s) 86
TatI WGTACW 2 cut(s) 81, 151
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 2 cut(s) 79, 171
Tth111I GACNNNGTC 1 cut(s) 182
VspI ATTAAT 1 cut(s) 216
XapI RAATTY 1 cut(s) 86
ZraI GACGTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.