pycom16g02210

MLP-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
1410176 .. 1410804
629 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g02210.2

Sequence Viewer

Length: 234 bp
ATGGTTCTGCATGGTAAAATTGGGACTGAAATAGAAATTAAGGCACCAGCTGACAAGTTGTACAACATGTTCAAGAGCGCCCACCTCATCCCAAACATCTCTAATACCCATATCAAAGGAGTTGATGTGCATGAAGGAGACTGGGAAACACACGGCTCTGTTAAGATTTGGAAATATGAACTAGATAGGGGACCATGTCGGGATATTCAAGGAACAGGTGGAGCTAGACGATGA

Protein Analysis

78

Amino Acids

8.64

Weight (kDa)

7.94

Isoelectric Point (pI)

20.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 43
AfaI GTAC 1 cut(s) 62
AflIII ACRYGT 1 cut(s) 66
AgsI TTSAA 2 cut(s) 73, 209
AluBI AGCT 2 cut(s) 50, 224
AluI AGCT 2 cut(s) 50, 224
Alw26I GTCTC 1 cut(s) 132
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 191
AvaII GGWCC 1 cut(s) 191
BanI GGYRCC 1 cut(s) 43
BceAI ACGGC 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 2 cut(s) 182, 225
BfoI RGCGCY 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 2 cut(s) 45, 192
BmrI ACTGGG 1 cut(s) 151
BmuI ACTGGG 1 cut(s) 151
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bse1I ACTGG 1 cut(s) 146
BseGI GGATG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 43
BslFI GGGAC 2 cut(s) 37, 204
BsmAI GTCTC 1 cut(s) 132
BsmFI GGGAC 2 cut(s) 37, 204
Bsp1407I TGTACA 1 cut(s) 60
BspLI GGNNCC 2 cut(s) 45, 192
BspT107I GGYRCC 1 cut(s) 43
BsrGI TGTACA 1 cut(s) 60
BsrI ACTGG 1 cut(s) 146
BstAUI TGTACA 1 cut(s) 60
BstF5I GGATG 1 cut(s) 87
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 1 cut(s) 80
BstMAI GTCTC 1 cut(s) 132
BstNSI RCATGY 1 cut(s) 70
BtsCI GGATG 1 cut(s) 87
CfoI GCGC 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 61
CviAII CATG 4 cut(s) 11, 67, 131, 195
CviJI RGCY 3 cut(s) 50, 156, 224
CviKI_1 RGCY 3 cut(s) 50, 156, 224
CviQI GTAC 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 191
FaeI CATG 4 cut(s) 14, 70, 134, 198
FaiI YATR 6 cut(s) 12, 68, 111, 132, 177, 196
FaqI GGGAC 2 cut(s) 37, 204
FatI CATG 4 cut(s) 10, 66, 130, 194
FokI GGATG 1 cut(s) 74
FspBI CTAG 2 cut(s) 182, 225
GlaI GCGC 1 cut(s) 79
HaeII RGCGCY 1 cut(s) 81
HhaI GCGC 1 cut(s) 80
Hin1II CATG 4 cut(s) 14, 70, 134, 198
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
Hpy188III TCNNGA 2 cut(s) 73, 200
HpyAV CCTTC 1 cut(s) 128
HpyCH4V TGCA 2 cut(s) 10, 130
Hsp92II CATG 4 cut(s) 14, 70, 134, 198
HspAI GCGC 1 cut(s) 78
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 3 cut(s) 60, 127, 201
MaeI CTAG 2 cut(s) 182, 225
MluCI AATT 2 cut(s) 18, 36
MnlI CCTC 1 cut(s) 95
MseI TTAA 2 cut(s) 39, 162
MspA1I CMGCKG 1 cut(s) 50
NlaIII CATG 4 cut(s) 14, 70, 134, 198
NlaIV GGNNCC 2 cut(s) 45, 192
NspI RCATGY 1 cut(s) 70
PciI ACATGT 1 cut(s) 66
PflFI GACNNNGTC 1 cut(s) 195
PscI ACATGT 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 45, 192
PspPI GGNCC 1 cut(s) 191
PsrI GAACNNNNNNTAC 2 cut(s) 53, 85
PsyI GACNNNGTC 1 cut(s) 195
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SaqAI TTAA 2 cut(s) 39, 162
Sau96I GGNCC 1 cut(s) 191
SetI ASST 4 cut(s) 52, 87, 220, 226
SinI GGWCC 1 cut(s) 191
Sse9I AATT 2 cut(s) 18, 36
SspMI CTAG 2 cut(s) 182, 225
TasI AATT 2 cut(s) 18, 36
TatI WGTACW 1 cut(s) 60
Tru1I TTAA 2 cut(s) 39, 162
Tru9I TTAA 2 cut(s) 39, 162
TspDTI ATGAA 2 cut(s) 147, 192
Tth111I GACNNNGTC 1 cut(s) 195
VpaK11BI GGWCC 1 cut(s) 191
XceI RCATGY 1 cut(s) 70
XspI CTAG 2 cut(s) 182, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.