Rmu_sc0000353.1_g000021

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000353.1
OG0000504
Physical Location & Seq
Reverse (-)
75936 .. 76430
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000353.1_g000021.1.cds

Sequence Viewer

Length: 411 bp
atgactttgagtgatactactagccgcggtgatcaaactttccaggtggagactctggaggagctggtagagatcaaagcttcagctgatgaagtgtacaaggtactcagcaaccagcagcacctcattcccgaagccgcttctgatcatgtacaggaggttgcagtgcatgaaggtgactgggaaactactggttttgtaaaggtttggaattacactatagatggaagagctgaaagcttcaaggaaaaggtggaaatagatgaagcaaacaagtcagtaagccttacaggtgacgtggaaggacatgtgctagagcagtacagaagctataaggtcacctttcaggtcattcctaaaaggagaagggggtttggtcaaaattactgtggaatatgggaagctcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

136

Amino Acids

15.5

Weight (kDa)

4.8

Isoelectric Point (pI)

26.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 27
AciI CCGC 3 cut(s) 25, 27, 138
AcuI CTGAAG 1 cut(s) 66
AfaI GTAC 4 cut(s) 98, 105, 153, 323
AflIII ACRYGT 1 cut(s) 307
AgsI TTSAA 1 cut(s) 244
AjiI CACGTC 1 cut(s) 298
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 7 cut(s) 64, 80, 86, 233, 240, 330, 404
AluI AGCT 7 cut(s) 64, 80, 86, 233, 240, 330, 404
Alw26I GTCTC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 118
AsuHPI GGTGA 4 cut(s) 41, 188, 305, 331
BbvI GCAGC 1 cut(s) 130
BccI CCATC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 44
BclI TGATCA 2 cut(s) 31, 145
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 2 cut(s) 21, 314
BfmI CTRYAG 1 cut(s) 219
BisI GCNGC 3 cut(s) 25, 119, 138
BlsI GCNGC 3 cut(s) 26, 120, 139
Bme1390I CCNGG 1 cut(s) 44
BmgBI CACGTC 1 cut(s) 298
BmrFI CCNGG 1 cut(s) 44
BmrI ACTGGG 1 cut(s) 190
BmuI ACTGGG 1 cut(s) 190
BpmI CTGGAG 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 25
Bse1I ACTGG 2 cut(s) 185, 196
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 121
BseNI ACTGG 2 cut(s) 185, 196
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 130
Bsh1236I CGCG 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 44
Bsp1407I TGTACA 2 cut(s) 96, 151
Bsp143I GATC 3 cut(s) 31, 72, 145
BspACI CCGC 3 cut(s) 25, 27, 138
BspCNI CTCAG 1 cut(s) 120
BspFNI CGCG 1 cut(s) 27
BspQI GCTCTTC 1 cut(s) 223
BsrGI TGTACA 2 cut(s) 96, 151
BsrI ACTGG 2 cut(s) 185, 196
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 3 cut(s) 31, 72, 145
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 389
Bst6I CTCTTC 1 cut(s) 223
BstAUI TGTACA 2 cut(s) 96, 151
BstDEI CTNAG 1 cut(s) 107
BstDSI CCRYGG 1 cut(s) 25
BstEII GGTNACC 1 cut(s) 337
BstFNI CGCG 1 cut(s) 27
BstKTI GATC 3 cut(s) 34, 75, 148
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 3 cut(s) 31, 72, 145
BstNI CCWGG 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 311
BstPI GGTNACC 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 42
BstSFI CTRYAG 1 cut(s) 219
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 130
BtgI CCRYGG 1 cut(s) 25
BtrI CACGTC 1 cut(s) 298
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
Cfr42I CCGCGG 1 cut(s) 28
Csp6I GTAC 4 cut(s) 97, 104, 152, 322
CviAII CATG 3 cut(s) 149, 170, 308
CviQI GTAC 4 cut(s) 97, 104, 152, 322
DdeI CTNAG 1 cut(s) 107
DpnI GATC 3 cut(s) 33, 74, 147
DpnII GATC 3 cut(s) 31, 72, 145
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 66
Eco91I GGTNACC 1 cut(s) 337
EcoO65I GGTNACC 1 cut(s) 337
EcoRII CCWGG 1 cut(s) 42
FaeI CATG 3 cut(s) 152, 173, 311
FaiI YATR 6 cut(s) 150, 171, 221, 309, 333, 397
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FatI CATG 3 cut(s) 148, 169, 307
FbaI TGATCA 2 cut(s) 31, 145
Fnu4HI GCNGC 3 cut(s) 25, 119, 138
Fsp4HI GCNGC 3 cut(s) 25, 119, 138
FspBI CTAG 2 cut(s) 21, 314
GluI GCNGC 3 cut(s) 25, 119, 138
GsuI CTGGAG 1 cut(s) 77
Hin1II CATG 3 cut(s) 152, 173, 311
HindIII AAGCTT 2 cut(s) 78, 238
HinfI GANTC 1 cut(s) 52
HphI GGTGA 4 cut(s) 41, 188, 305, 331
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 56, 131
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 3 cut(s) 167, 296, 360
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 2 cut(s) 164, 169
HpyF3I CTNAG 1 cut(s) 107
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 3 cut(s) 152, 173, 311
Ksp22I TGATCA 2 cut(s) 31, 145
KspI CCGCGG 1 cut(s) 28
Kzo9I GATC 3 cut(s) 31, 72, 145
LguI GCTCTTC 1 cut(s) 223
LmnI GCTCC 1 cut(s) 61
Lsp1109I GCAGC 1 cut(s) 130
MaeI CTAG 2 cut(s) 21, 314
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 3 cut(s) 176, 293, 337
MalI GATC 3 cut(s) 33, 74, 147
MboI GATC 3 cut(s) 31, 72, 145
MboII GAAGA 1 cut(s) 240
MluCI AATT 2 cut(s) 211, 382
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 3 cut(s) 52, 134, 151
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 2 cut(s) 27, 86
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
MvnI CGCG 1 cut(s) 27
NdeII GATC 3 cut(s) 31, 72, 145
NlaIII CATG 3 cut(s) 152, 173, 311
NmuCI GTSAC 3 cut(s) 176, 293, 337
NspI RCATGY 1 cut(s) 311
PciI ACATGT 1 cut(s) 307
PciSI GCTCTTC 1 cut(s) 223
PkrI GCNGC 3 cut(s) 26, 120, 139
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PscI ACATGT 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 42
PspEI GGTNACC 1 cut(s) 337
PspGI CCWGG 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 4 cut(s) 98, 105, 153, 323
RsaNI GTAC 4 cut(s) 97, 104, 152, 322
RseI CAYNNNNRTG 1 cut(s) 174
SacII CCGCGG 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 223
SatI GCNGC 3 cut(s) 25, 119, 138
Sau3AI GATC 3 cut(s) 31, 72, 145
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 44
SfcI CTRYAG 1 cut(s) 219
Sfr303I CCGCGG 1 cut(s) 28
SgrBI CCGCGG 1 cut(s) 28
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 2 cut(s) 211, 382
SsiI CCGC 3 cut(s) 25, 27, 138
SspMI CTAG 2 cut(s) 21, 314
StyD4I CCNGG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 389
TaiI ACGT 1 cut(s) 300
TasI AATT 2 cut(s) 211, 382
TatI WGTACW 3 cut(s) 96, 151, 321
TauI GCSGC 2 cut(s) 27, 140
TscAI CASTG 1 cut(s) 171
TseFI GTSAC 3 cut(s) 176, 293, 337
TseI GCWGC 1 cut(s) 118
Tsp45I GTSAC 3 cut(s) 176, 293, 337
TspDTI ATGAA 3 cut(s) 105, 186, 279
TspRI CASTG 1 cut(s) 171
XceI RCATGY 1 cut(s) 311
XspI CTAG 2 cut(s) 21, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.