Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000504

Physical Location & Seq

Genomic Coordinates Forward (+)

1675296 .. 1679094

Gene Structure 3799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1023300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCAATCCCCTTGCATATATAGCCTTAATTGTACTCAACAACTAACATGTGTTGAGACTGAGATTGAAATTAAGGCACCCGCTGAGAAGTTCTACAATATCTTCAAGAGACAGGCTCACCACGTCCCAAACATTTCTTCTGGCAGTATCCAGGGAGTTCAGGTGCATGAAGGAGACTGGGAAACTCATGGCTCTATTAAAAGTTGGAATTACAGTGTAGGGGACGAAGTTGGAGTATTCAAGGAAAAAGTGGAGTTTAACGACGAGAAAAAATCCATAACACTGAATGGTTTGGAAGGAGATGTTTTCCAGTATTATAAGAGCTTCAAGCCAGTCTATCAATTCACTCAAAAGGATGAAGGCAACATTGCGAACTTGTCGATTGAATATGAGAAACTGACTGAGGATGTTGCAGCTCCGGACAAATACGTCGGTCTGATGGTTAACATCGTCAAGGATCTTGATGCTCACTTTATCAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010228 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0080184

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

162

Amino Acids

18.3

Weight (kDa)

5.09

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	18 - 160	2e-49	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca	FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica	MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica	Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis	pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis	RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata	RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora	Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii	Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa	Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha	Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana	Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AasI	GACNNNNNNGTC	1 cut(s)	428
AccB1I	GGYRCC	1 cut(s)	76
AccIII	TCCGGA	1 cut(s)	418
AciI	CCGC	1 cut(s)	81
AclWI	GGATC	1 cut(s)	465
AfaI	GTAC	1 cut(s)	34
AflIII	ACRYGT	1 cut(s)	47
AgsI	TTSAA	5 cut(s)	68, 106, 241, 328, 386
AjiI	CACGTC	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	150
AjuI	GAANNNNNNNTTGG	2 cut(s)	121, 153
AluBI	AGCT	2 cut(s)	324, 416
AluI	AGCT	2 cut(s)	324, 416
Alw26I	GTCTC	3 cut(s)	50, 103, 168
AlwI	GGATC	1 cut(s)	465
Aor13HI	TCCGGA	1 cut(s)	418
ApeKI	GCWGC	1 cut(s)	413
AsuHPI	GGTGA	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	425
BccI	CCATC	1 cut(s)	433
BciT130I	CCWGG	1 cut(s)	152
BciVI	GTATCC	1 cut(s)	158
BcoDI	GTCTC	3 cut(s)	50, 103, 168
BfuI	GTATCC	1 cut(s)	158
BisI	GCNGC	1 cut(s)	414
BlsI	GCNGC	1 cut(s)	415
Bme1390I	CCNGG	1 cut(s)	152
BmgBI	CACGTC	1 cut(s)	124
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	152
BmrI	ACTGGG	1 cut(s)	187
BmsI	GCATC	1 cut(s)	454
BmuI	ACTGGG	1 cut(s)	187
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
BsaJI	CCNNGG	1 cut(s)	151
BsaWI	WCCGGW	1 cut(s)	418
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bse1I	ACTGG	3 cut(s)	182, 310, 332
Bse3DI	GCAATG	1 cut(s)	366
BseAI	TCCGGA	1 cut(s)	418
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	2 cut(s)	361, 412
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	3 cut(s)	51, 75, 393
BseNI	ACTGG	3 cut(s)	182, 310, 332
BseXI	GCAGC	1 cut(s)	425
BshNI	GGYRCC	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	419
BslFI	GGGAC	2 cut(s)	110, 236
BsmAI	GTCTC	3 cut(s)	50, 103, 168
BsmFI	GGGAC	2 cut(s)	110, 236
Bsp13I	TCCGGA	1 cut(s)	418
Bsp143I	GATC	1 cut(s)	457
BspACI	CCGC	1 cut(s)	81
BspCNI	CTCAG	3 cut(s)	52, 76, 394
BspEI	TCCGGA	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	78
BspPI	GGATC	1 cut(s)	465
BspT107I	GGYRCC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	366
BsrI	ACTGG	3 cut(s)	182, 310, 332
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	1 cut(s)	457
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	215
BstDEI	CTNAG	3 cut(s)	60, 84, 402
BstF5I	GGATG	2 cut(s)	361, 412
BstKTI	GATC	1 cut(s)	460
BstMAI	GTCTC	3 cut(s)	50, 103, 168
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	1 cut(s)	21
BstNI	CCWGG	1 cut(s)	152
BstNSI	RCATGY	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	425
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuI	GTATCC	1 cut(s)	158
BtrI	CACGTC	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	361, 412
BtsIMutI	CAGTG	2 cut(s)	220, 281
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	4 cut(s)	48, 167, 188, 483
CviJI	RGCY	6 cut(s)	24, 116, 192, 324, 331, 416
CviKI_1	RGCY	6 cut(s)	24, 116, 192, 324, 331, 416
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	3 cut(s)	60, 84, 402
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
DrdI	GACNNNNNNGTC	1 cut(s)	428
DseDI	GACNNNNNNGTC	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	150
FaeI	CATG	4 cut(s)	51, 170, 191, 486
FaqI	GGGAC	2 cut(s)	110, 236
FatI	CATG	4 cut(s)	47, 166, 187, 482
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	414
FokI	GGATG	2 cut(s)	368, 419
Fsp4HI	GCNGC	1 cut(s)	414
GluI	GCNGC	1 cut(s)	414
HapII	CCGG	1 cut(s)	419
Hin1II	CATG	4 cut(s)	51, 170, 191, 486
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HpaI	GTTAAC	1 cut(s)	445
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	1 cut(s)	438
Hpy188III	TCNNGA	3 cut(s)	106, 419, 461
Hpy8I	GTNNAC	1 cut(s)	445
Hpy99I	CGWCG	2 cut(s)	266, 434
HpyAV	CCTTC	3 cut(s)	164, 290, 353
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	2 cut(s)	123, 429
HpyCH4V	TGCA	4 cut(s)	4, 15, 166, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	21
HpyF3I	CTNAG	3 cut(s)	60, 84, 402
HpySE526I	ACGT	2 cut(s)	123, 429
Hsp92II	CATG	4 cut(s)	51, 170, 191, 486
Kpn2I	TCCGGA	1 cut(s)	418
KspAI	GTTAAC	1 cut(s)	445
Kzo9I	GATC	1 cut(s)	457
LmnI	GCTCC	1 cut(s)	421
LpnPI	CCDG	9 cut(s)	98, 126, 137, 146, 163, 164, 323, 345, 432
Lsp1109I	GCAGC	1 cut(s)	425
LweI	GCATC	1 cut(s)	454
MaeII	ACGT	2 cut(s)	123, 429
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MboII	GAAGA	2 cut(s)	94, 129
MflI	RGATCY	1 cut(s)	457
MluCI	AATT	4 cut(s)	28, 69, 208, 341
MmeI	TCCRAC	2 cut(s)	185, 211
MnlI	CCTC	1 cut(s)	397
MroI	TCCGGA	1 cut(s)	418
MseI	TTAA	5 cut(s)	27, 72, 198, 258, 444
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	21
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	4 cut(s)	51, 170, 191, 486
NlaIV	GGNNCC	1 cut(s)	78
NspI	RCATGY	1 cut(s)	51
PciI	ACATGT	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	415
PscI	ACATGT	1 cut(s)	47
PsiI	TTATAA	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	457
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SaqAI	TTAA	5 cut(s)	27, 72, 198, 258, 444
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	1 cut(s)	457
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	5 cut(s)	126, 165, 326, 418, 432
SfaNI	GCATC	1 cut(s)	454
Sse9I	AATT	4 cut(s)	28, 69, 208, 341
SsiI	CCGC	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	2 cut(s)	126, 432
TaqI	TCGA	1 cut(s)	380
TaqII	GACCGA	1 cut(s)	422
TasI	AATT	4 cut(s)	28, 69, 208, 341
TatI	WGTACW	1 cut(s)	32
Tru1I	TTAA	5 cut(s)	27, 72, 198, 258, 444
Tru9I	TTAA	5 cut(s)	27, 72, 198, 258, 444
TscAI	CASTG	2 cut(s)	220, 288
TseI	GCWGC	1 cut(s)	413
TspDTI	ATGAA	2 cut(s)	183, 372
TspRI	CASTG	2 cut(s)	220, 288
XceI	RCATGY	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.