FvH4_4g32720

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000504
Physical Location & Seq
Forward (+)
31275381 .. 31276370
990 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g32720.t1

Sequence Viewer

Length: 486 bp
ATGGCTTTGAGTAGCAGTACTACTACTGGCAACTTAAAGACTCTGGAGGCCGTGGTAGAGATCAAATCCTCAGCTGATAAAGTGTACAGTCTCATAAGCATCGAGCACCACAATGTTCCTAAAGCCTCCTCTGATAAGGTACACGACGTTGCAGTACATGAAGGTGACTGGGAAACTACTGGTTCCATCAAGCTCTGGAAATACACCATAGATGGAACTGTTGAGACACTTAAGGAGAAGGTGGAGATAGATGAAGCAAACAAGAGGGTGAGTCTCACGGCATTGGAAGGACATGTGCTCAACAAGTACAGGAGCATTAAGATCATCTATCAGGTCATTCCAAAGAGTAACGAAGGAGCTGATCATTTGGTTAAAGTTACTCTGGAATATGAGAAGCTTAATGAGAGTGACCAGCCTCCGAATAACTACCTCAGCTTTTGTGTCAATGTTATCAAGGATATTGATGCACATCTTATCGCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

162

Amino Acids

17.9

Weight (kDa)

5.62

Isoelectric Point (pI)

19.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 13 - 160 1.1e-49 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 5 cut(s) 19, 86, 141, 156, 308
AflII CTTAAG 1 cut(s) 230
AflIII ACRYGT 1 cut(s) 292
AluBI AGCT 5 cut(s) 74, 193, 359, 397, 435
AluI AGCT 5 cut(s) 74, 193, 359, 397, 435
Alw21I GWGCWC 2 cut(s) 108, 300
Alw26I GTCTC 3 cut(s) 95, 218, 278
AoxI GGCC 1 cut(s) 48
AsuHPI GGTGA 2 cut(s) 176, 280
Bbv12I GWGCWC 2 cut(s) 108, 300
BbvCI CCTCAGC 2 cut(s) 70, 431
BccI CCATC 2 cut(s) 194, 206
BceAI ACGGC 2 cut(s) 35, 294
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 3 cut(s) 95, 218, 278
BfrI CTTAAG 1 cut(s) 230
BmcAI AGTACT 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 184
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 2 cut(s) 108, 454
BmuI ACTGGG 1 cut(s) 178
BpmI CTGGAG 1 cut(s) 65
Bpu10I CCTNAGC 2 cut(s) 70, 431
BsaBI GATNNNNATC 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 51
Bse1I ACTGG 3 cut(s) 31, 173, 184
Bse8I GATNNNNATC 1 cut(s) 468
BseDI CCNNGG 1 cut(s) 51
BseJI GATNNNNATC 1 cut(s) 468
BseMII CTCAG 2 cut(s) 84, 445
BseNI ACTGG 3 cut(s) 31, 173, 184
BseRI GAGGAG 1 cut(s) 118
BshFI GGCC 1 cut(s) 50
BsiHKAI GWGCWC 2 cut(s) 108, 300
BsmAI GTCTC 3 cut(s) 95, 218, 278
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 108, 300
Bsp1407I TGTACA 1 cut(s) 84
Bsp143I GATC 3 cut(s) 60, 321, 361
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 83, 444
BspLI GGNNCC 1 cut(s) 184
BspTI CTTAAG 1 cut(s) 230
BsrGI TGTACA 1 cut(s) 84
BsrI ACTGG 3 cut(s) 31, 173, 184
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 3 cut(s) 60, 321, 361
Bst4CI ACNGT 2 cut(s) 89, 220
BstAFI CTTAAG 1 cut(s) 230
BstAUI TGTACA 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 70, 431
BstDSI CCRYGG 1 cut(s) 51
BstKTI GATC 3 cut(s) 63, 324, 364
BstMAI GTCTC 3 cut(s) 95, 218, 278
BstMBI GATC 3 cut(s) 60, 321, 361
BstNSI RCATGY 1 cut(s) 296
BsuRI GGCC 1 cut(s) 50
BtgI CCRYGG 1 cut(s) 51
Csp6I GTAC 5 cut(s) 18, 85, 140, 155, 307
CviAII CATG 2 cut(s) 158, 293
CviJI RGCY 9 cut(s) 5, 50, 74, 125, 193, 359, 397, 415, 435
CviKI_1 RGCY 9 cut(s) 5, 50, 74, 125, 193, 359, 397, 415, 435
CviQI GTAC 5 cut(s) 18, 85, 140, 155, 307
DdeI CTNAG 2 cut(s) 70, 431
DpnI GATC 3 cut(s) 62, 323, 363
DpnII GATC 3 cut(s) 60, 321, 361
FaeI CATG 2 cut(s) 161, 296
FaiI YATR 5 cut(s) 95, 159, 209, 294, 390
FatI CATG 2 cut(s) 157, 292
FbaI TGATCA 1 cut(s) 361
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 1 cut(s) 50
Hin1II CATG 2 cut(s) 161, 296
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 2 cut(s) 40, 271
HphI GGTGA 2 cut(s) 176, 280
Hpy166II GTNNAC 2 cut(s) 85, 142
Hpy188I TCNGA 2 cut(s) 133, 420
Hpy188III TCNNGA 3 cut(s) 44, 196, 383
Hpy8I GTNNAC 2 cut(s) 85, 142
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 4 cut(s) 155, 232, 281, 347
HpyCH4III ACNGT 2 cut(s) 89, 220
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 2 cut(s) 152, 467
HpyF3I CTNAG 2 cut(s) 70, 431
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 2 cut(s) 161, 296
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 3 cut(s) 60, 321, 361
LmnI GCTCC 2 cut(s) 312, 356
LpnPI CCDG 9 cut(s) 12, 29, 154, 165, 181, 295, 317, 368, 425
LweI GCATC 2 cut(s) 108, 454
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 4 cut(s) 164, 347, 376, 407
MalI GATC 3 cut(s) 62, 323, 363
MboI GATC 3 cut(s) 60, 321, 361
MhlI GDGCHC 2 cut(s) 108, 300
MlyI GAGTC 2 cut(s) 34, 280
MnlI CCTC 7 cut(s) 40, 79, 136, 139, 258, 426, 440
MseI TTAA 6 cut(s) 35, 231, 318, 372, 399, 484
MslI CAYNNNNRTG 2 cut(s) 111, 162
MspA1I CMGCKG 1 cut(s) 74
MspCI CTTAAG 1 cut(s) 230
NdeII GATC 3 cut(s) 60, 321, 361
NlaIII CATG 2 cut(s) 161, 296
NlaIV GGNNCC 1 cut(s) 184
NmuCI GTSAC 2 cut(s) 164, 407
NspI RCATGY 1 cut(s) 296
PciI ACATGT 1 cut(s) 292
PleI GAGTC 2 cut(s) 34, 279
PpsI GAGTC 2 cut(s) 34, 279
PscI ACATGT 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 184
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 5 cut(s) 19, 86, 141, 156, 308
RsaNI GTAC 5 cut(s) 18, 85, 140, 155, 307
RseI CAYNNNNRTG 2 cut(s) 111, 162
SaqAI TTAA 6 cut(s) 35, 231, 318, 372, 399, 484
Sau3AI GATC 3 cut(s) 60, 321, 361
ScaI AGTACT 1 cut(s) 19
SchI GAGTC 2 cut(s) 34, 280
SduI GDGCHC 2 cut(s) 108, 300
SfaNI GCATC 2 cut(s) 108, 454
SmiMI CAYNNNNRTG 2 cut(s) 111, 162
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
TaaI ACNGT 2 cut(s) 89, 220
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 102
TatI WGTACW 4 cut(s) 17, 84, 154, 306
Tru1I TTAA 6 cut(s) 35, 231, 318, 372, 399, 484
Tru9I TTAA 6 cut(s) 35, 231, 318, 372, 399, 484
TseFI GTSAC 2 cut(s) 164, 407
Tsp45I GTSAC 2 cut(s) 164, 407
TspDTI ATGAA 2 cut(s) 174, 267
Vha464I CTTAAG 1 cut(s) 230
XceI RCATGY 1 cut(s) 296
ZrmI AGTACT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.