Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000504

Physical Location & Seq

Genomic Coordinates Forward (+)

235925 .. 237253

Gene Structure 1329 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCGACGTCAGGAACATATGTGACGGAGGTTCCATTGAAAGGATCGGCTGAGAAACACTACAAGCGGTGGAGGAGTGAGAACCACCTCTTCCCCGACGCCATCGGCCACCACATCCAAGGTGTCACCATCCACGACGGTGAATGGGACTCCCATGGAGCCATCAAGATTTGGAACTACACATGCGATGGGAAACCGGAGGTGTTCAAGGAGAGGAGAGAGATAGACGATGAGAATATGGCGGTAACGTTCAGAGGACTCGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATGACGTCATCTTTCAGTTCATTCAAAAGTCACCTGATGATATCATCTGTAAGATCACTATGATCTGGGAGAAGCAAAACGATGACATGCCTGAGCCCAGCAACTACATGAAGTTCGTCAAGAGCCTCGCTGCTGACATGGATGATCACGTTCTCAAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010228 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0080184

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

151

Amino Acids

17.51

Weight (kDa)

5.42

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	2 - 150	1.2e-69	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca	FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica	MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica	Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis	pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis	RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata	RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora	Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii	Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa	Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha	Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana	Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	264
AatII	GACGTC	2 cut(s)	11, 300
AciI	CCGC	2 cut(s)	67, 242
AclI	AACGTT	1 cut(s)	248
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	106
AcvI	CACGTG	1 cut(s)	271
AcyI	GRCGYC	3 cut(s)	8, 99, 297
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	3 cut(s)	40, 208, 317
AleI	CACNNNNGTG	1 cut(s)	138
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	2 cut(s)	280, 422
AsuHPI	GGTGA	3 cut(s)	118, 152, 315
BanII	GRGCYC	1 cut(s)	390
BbrPI	CACGTG	1 cut(s)	271
BbvI	GCAGC	2 cut(s)	292, 409
BccI	CCATC	5 cut(s)	110, 137, 170, 182, 268
BclI	TGATCA	1 cut(s)	436
BisI	GCNGC	2 cut(s)	281, 423
BlsI	GCNGC	2 cut(s)	282, 424
BmiI	GGNNCC	2 cut(s)	33, 160
Bpu10I	CCTNAGC	1 cut(s)	384
BsaAI	YACGTR	1 cut(s)	271
BsaHI	GRCGYC	3 cut(s)	8, 99, 297
BsaJI	CCNNGG	2 cut(s)	118, 154
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	118, 154
BseGI	GGATG	3 cut(s)	114, 129, 439
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	2 cut(s)	42, 375
BseRI	GAGGAG	2 cut(s)	88, 229
BseXI	GCAGC	2 cut(s)	292, 409
BseYI	CCCAGC	1 cut(s)	389
BshFI	GGCC	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	4 cut(s)	44, 345, 354, 436
Bsp19I	CCATGG	1 cut(s)	154
BspACI	CCGC	2 cut(s)	67, 242
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	2 cut(s)	43, 376
BspLI	GGNNCC	2 cut(s)	33, 160
BspPI	GGATC	1 cut(s)	52
BssECI	CCNNGG	2 cut(s)	118, 154
BssMI	GATC	4 cut(s)	44, 345, 354, 436
BssNI	GRCGYC	3 cut(s)	8, 99, 297
BssT1I	CCWWGG	2 cut(s)	118, 154
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	95
BstACI	GRCGYC	3 cut(s)	8, 99, 297
BstBAI	YACGTR	1 cut(s)	271
BstDEI	CTNAG	2 cut(s)	51, 384
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	3 cut(s)	114, 129, 439
BstKTI	GATC	4 cut(s)	47, 348, 357, 439
BstMBI	GATC	4 cut(s)	44, 345, 354, 436
BstNSI	RCATGY	2 cut(s)	186, 382
BstV1I	GCAGC	2 cut(s)	292, 409
BsuRI	GGCC	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	154
BtgZI	GCGATG	1 cut(s)	201
BtsCI	GGATG	3 cut(s)	114, 129, 439
CseI	GACGC	1 cut(s)	107
CviAII	CATG	5 cut(s)	155, 183, 379, 400, 430
CviJI	RGCY	7 cut(s)	50, 108, 161, 283, 388, 417, 452
CviKI_1	RGCY	7 cut(s)	50, 108, 161, 283, 388, 417, 452
DdeI	CTNAG	2 cut(s)	51, 384
DpnI	GATC	4 cut(s)	46, 347, 356, 438
DpnII	GATC	4 cut(s)	44, 345, 354, 436
DrdI	GACNNNNNNGTC	1 cut(s)	264
DseDI	GACNNNNNNGTC	1 cut(s)	264
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco130I	CCWWGG	2 cut(s)	118, 154
Eco24I	GRGCYC	1 cut(s)	390
Eco32I	GATATC	1 cut(s)	334
Eco72I	CACGTG	1 cut(s)	271
EcoRV	GATATC	1 cut(s)	334
EcoT14I	CCWWGG	2 cut(s)	118, 154
EcoT38I	GRGCYC	1 cut(s)	390
ErhI	CCWWGG	2 cut(s)	118, 154
FaeI	CATG	5 cut(s)	158, 186, 382, 403, 433
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	5 cut(s)	154, 182, 378, 399, 429
FauNDI	CATATG	1 cut(s)	19
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	2 cut(s)	281, 423
FokI	GGATG	3 cut(s)	101, 116, 446
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	2 cut(s)	281, 423
GluI	GCNGC	2 cut(s)	281, 423
GsaI	CCCAGC	1 cut(s)	393
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	1 cut(s)	107
Hin1I	GRCGYC	3 cut(s)	8, 99, 297
Hin1II	CATG	5 cut(s)	158, 186, 382, 403, 433
HinfI	GANTC	2 cut(s)	149, 258
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	3 cut(s)	118, 152, 315
Hpy188I	TCNGA	1 cut(s)	254
Hpy188III	TCNNGA	3 cut(s)	12, 166, 412
Hpy99I	CGWCG	3 cut(s)	10, 101, 140
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4IV	ACGT	5 cut(s)	8, 248, 270, 297, 441
HpyF3I	CTNAG	2 cut(s)	51, 384
HpySE526I	ACGT	5 cut(s)	8, 248, 270, 297, 441
Hsp92I	GRCGYC	3 cut(s)	8, 99, 297
Hsp92II	CATG	5 cut(s)	158, 186, 382, 403, 433
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	4 cut(s)	44, 345, 354, 436
LmnI	GCTCC	2 cut(s)	158, 277
LpnPI	CCDG	5 cut(s)	210, 339, 343, 396, 403
Lsp1109I	GCAGC	2 cut(s)	292, 409
MaeII	ACGT	5 cut(s)	8, 248, 270, 297, 441
MaeIII	GTNAC	5 cut(s)	22, 124, 244, 266, 321
MalI	GATC	4 cut(s)	46, 347, 356, 438
MboI	GATC	4 cut(s)	44, 345, 354, 436
MboII	GAAGA	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	390
MlyI	GAGTC	2 cut(s)	143, 252
MnlI	CCTC	7 cut(s)	22, 66, 98, 193, 207, 248, 428
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	138
MspI	CCGG	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	154
NdeI	CATATG	1 cut(s)	19
NdeII	GATC	4 cut(s)	44, 345, 354, 436
NlaIII	CATG	5 cut(s)	158, 186, 382, 403, 433
NlaIV	GGNNCC	2 cut(s)	33, 160
NmuCI	GTSAC	4 cut(s)	22, 124, 266, 321
NspI	RCATGY	2 cut(s)	186, 382
OliI	CACNNNNGTG	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PkrI	GCNGC	2 cut(s)	282, 424
PleI	GAGTC	2 cut(s)	143, 252
PmaCI	CACGTG	1 cut(s)	271
PmlI	CACGTG	1 cut(s)	271
PpsI	GAGTC	2 cut(s)	143, 252
Ppu21I	YACGTR	1 cut(s)	271
Psp1406I	AACGTT	1 cut(s)	248
PspCI	CACGTG	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	389
PspN4I	GGNNCC	2 cut(s)	33, 160
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	2 cut(s)	281, 423
Sau3AI	GATC	4 cut(s)	44, 345, 354, 436
SchI	GAGTC	2 cut(s)	143, 252
SduI	GDGCHC	1 cut(s)	390
SmiMI	CAYNNNNRTG	1 cut(s)	138
SsiI	CCGC	2 cut(s)	67, 242
StyI	CCWWGG	2 cut(s)	118, 154
TaaI	ACNGT	1 cut(s)	140
TaiI	ACGT	5 cut(s)	11, 251, 273, 300, 444
TaqI	TCGA	1 cut(s)	261
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TseFI	GTSAC	4 cut(s)	22, 124, 266, 321
TseI	GCWGC	2 cut(s)	280, 422
Tsp45I	GTSAC	4 cut(s)	22, 124, 266, 321
TspDTI	ATGAA	2 cut(s)	301, 416
TspGWI	ACGGA	1 cut(s)	41
XceI	RCATGY	2 cut(s)	186, 382
ZraI	GACGTC	2 cut(s)	9, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.