Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000504

Physical Location & Seq

Genomic Coordinates Reverse (-)

5157336 .. 5158269

Gene Structure 934 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G14950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCGACGTCAGGTACATACGTGACAGAAGTTCCTCTGAAAGGGTCAGCGAAGAACCACTACAAGAGGTGGAAGAGCGAAAACCAACTCTTCCCTGACGCCATTGGCCATCATATCCAAGGTGTCACCGTTCACGAGGGCGACTGGGACTCCCACGGGGCCATCAAGTCCTGGAACTACACATGCGATGGGAAGCAAGAGGTGTTCAAGGAGAAGAGGGAGTTAGACGACCAGAAGATGGCGGTGACGTTTAGAGGGCTGGATGGTCATGTGATGGAGCAGCTTAAGGTGTATGACGTCATCTTCCAATTCGTCCCTAAGTCTCAGGAAGGTTGCGTCTGCAAAGTCACTATGTTTTGGGAGAAGCGCTACGAAGACTCTCCAGAGCCCATCAAGTACATGAAGTTCGTCACGAGCTTGGCTGCTGACATGGATGACCACATTCTCAAGAACCAGAGCAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010228 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0080184

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

155

Amino Acids

17.89

Weight (kDa)

6.37

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	2 - 151	1.7e-69	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca	FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica	MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica	Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis	pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis	RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata	RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora	Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii	Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa	Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha	Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana	Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	11, 300
AccB7I	CCANNNNNTGG	1 cut(s)	238
AciI	CCGC	1 cut(s)	242
AcoI	YGGCCR	1 cut(s)	106
AcyI	GRCGYC	3 cut(s)	8, 99, 297
AfaI	GTAC	2 cut(s)	16, 398
AfeI	AGCGCT	1 cut(s)	368
AfiI	CCNNNNNNNGG	3 cut(s)	41, 238, 460
AflII	CTTAAG	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	2 cut(s)	283, 417
AluI	AGCT	2 cut(s)	283, 417
Alw26I	GTCTC	1 cut(s)	327
Aor51HI	AGCGCT	1 cut(s)	368
AoxI	GGCC	2 cut(s)	106, 159
ApeKI	GCWGC	2 cut(s)	280, 422
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	159
AsuHPI	GGTGA	2 cut(s)	118, 256
BaeI	ACNNNNGTAYC	1 cut(s)	39
BalI	TGGCCA	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	390
BarI	GAAGNNNNNNTAC	2 cut(s)	44, 76
BauI	CACGAG	2 cut(s)	134, 412
BbsI	GAAGAC	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	292, 409
BccI	CCATC	7 cut(s)	117, 170, 182, 232, 257, 268, 398
BciT130I	CCWGG	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	327
BfoI	RGCGCY	1 cut(s)	370
BfrI	CTTAAG	1 cut(s)	284
BisI	GCNGC	2 cut(s)	281, 423
BlsI	GCNGC	2 cut(s)	282, 424
Bme1390I	CCNGG	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	1 cut(s)	172
BmrI	ACTGGG	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	431
BsaAI	YACGTR	1 cut(s)	22
BsaHI	GRCGYC	3 cut(s)	8, 99, 297
BsaJI	CCNNGG	2 cut(s)	118, 154
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 238, 460
Bse1I	ACTGG	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	2 cut(s)	118, 154
BseGI	GGATG	2 cut(s)	268, 439
BseLI	CCNNNNNNNGG	3 cut(s)	41, 238, 460
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	292, 409
BshFI	GGCC	2 cut(s)	108, 161
BslFI	GGGAC	2 cut(s)	161, 299
BslI	CCNNNNNNNGG	3 cut(s)	41, 238, 460
BsmAI	GTCTC	1 cut(s)	327
BsmFI	GGGAC	2 cut(s)	161, 299
BsnI	GGCC	2 cut(s)	108, 161
Bsp1286I	GDGCHC	1 cut(s)	390
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	2 cut(s)	108, 161
BspCNI	CTCAG	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	160
BspQI	GCTCTTC	1 cut(s)	68
BspTI	CTTAAG	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	2 cut(s)	118, 154
BssNI	GRCGYC	3 cut(s)	8, 99, 297
BssSI	CACGAG	2 cut(s)	134, 412
BssT1I	CCWWGG	1 cut(s)	118
Bst2BI	CACGAG	2 cut(s)	134, 412
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	3 cut(s)	68, 95, 209
BstACI	GRCGYC	3 cut(s)	8, 99, 297
BstAFI	CTTAAG	1 cut(s)	284
BstBAI	YACGTR	1 cut(s)	22
BstDEI	CTNAG	2 cut(s)	318, 324
BstDSI	CCRYGG	1 cut(s)	154
BstENI	CCTNNNNNAGG	1 cut(s)	39
BstF5I	GGATG	2 cut(s)	268, 439
BstH2I	RGCGCY	1 cut(s)	370
BstHHI	GCGC	1 cut(s)	369
BstMAI	GTCTC	1 cut(s)	327
BstNI	CCWGG	1 cut(s)	172
BstNSI	RCATGY	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	292, 409
BstV2I	GAAGAC	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	108, 161
BtgI	CCRYGG	1 cut(s)	154
BtgZI	GCGATG	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	268, 439
CfoI	GCGC	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	159
CseI	GACGC	2 cut(s)	107, 325
Csp6I	GTAC	2 cut(s)	15, 397
CviAII	CATG	4 cut(s)	183, 269, 400, 430
CviJI	RGCY	8 cut(s)	108, 161, 259, 283, 388, 417, 422, 464
CviKI_1	RGCY	8 cut(s)	108, 161, 259, 283, 388, 417, 422, 464
CviQI	GTAC	2 cut(s)	15, 397
DdeI	CTNAG	2 cut(s)	318, 324
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	3 cut(s)	68, 95, 209
EarI	CTCTTC	3 cut(s)	68, 95, 209
Eco130I	CCWWGG	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	390
Eco47III	AGCGCT	1 cut(s)	368
EcoNI	CCTNNNNNAGG	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	4 cut(s)	186, 272, 403, 433
FaiI	YATR	8 cut(s)	19, 114, 184, 270, 294, 353, 401, 431
FaqI	GGGAC	2 cut(s)	161, 299
FatI	CATG	4 cut(s)	182, 268, 399, 429
Fnu4HI	GCNGC	2 cut(s)	281, 423
FokI	GGATG	2 cut(s)	275, 446
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	2 cut(s)	281, 423
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	2 cut(s)	281, 423
GsuI	CTGGAG	1 cut(s)	366
HaeII	RGCGCY	1 cut(s)	370
HaeIII	GGCC	2 cut(s)	108, 161
HgaI	GACGC	2 cut(s)	107, 325
HhaI	GCGC	1 cut(s)	369
Hin1I	GRCGYC	3 cut(s)	8, 99, 297
Hin1II	CATG	4 cut(s)	186, 272, 403, 433
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HinfI	GANTC	2 cut(s)	149, 377
HphI	GGTGA	2 cut(s)	118, 256
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	5 cut(s)	134, 326, 383, 412, 448
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	4 cut(s)	8, 21, 248, 297
HpyCH4V	TGCA	1 cut(s)	342
HpyF3I	CTNAG	2 cut(s)	318, 324
HpySE526I	ACGT	4 cut(s)	8, 21, 248, 297
Hsp92I	GRCGYC	3 cut(s)	8, 99, 297
Hsp92II	CATG	4 cut(s)	186, 272, 403, 433
HspAI	GCGC	1 cut(s)	367
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	8 cut(s)	108, 130, 157, 184, 245, 245, 311, 396
Lsp1109I	GCAGC	2 cut(s)	292, 409
MaeII	ACGT	4 cut(s)	8, 21, 248, 297
MaeIII	GTNAC	5 cut(s)	22, 124, 244, 346, 409
MboII	GAAGA	7 cut(s)	64, 82, 85, 226, 247, 295, 386
MhlI	GDGCHC	1 cut(s)	390
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	1 cut(s)	308
MluNI	TGGCCA	1 cut(s)	108
MlyI	GAGTC	2 cut(s)	143, 371
MnlI	CCTC	6 cut(s)	45, 60, 130, 193, 210, 248
Mox20I	TGGCCA	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	2 cut(s)	285, 466
Msp20I	TGGCCA	1 cut(s)	108
MspCI	CTTAAG	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	172
NlaIII	CATG	4 cut(s)	186, 272, 403, 433
NlaIV	GGNNCC	1 cut(s)	160
NmuCI	GTSAC	5 cut(s)	22, 124, 244, 346, 409
NspI	RCATGY	1 cut(s)	186
PciSI	GCTCTTC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	238
PfoI	TCCNGGA	1 cut(s)	170
PkrI	GCNGC	2 cut(s)	282, 424
PleI	GAGTC	2 cut(s)	143, 371
PpsI	GAGTC	2 cut(s)	143, 371
Ppu21I	YACGTR	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	159
PsrI	GAACNNNNNNTAC	2 cut(s)	389, 421
RsaI	GTAC	2 cut(s)	16, 398
RsaNI	GTAC	2 cut(s)	15, 397
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	285, 466
SatI	GCNGC	2 cut(s)	281, 423
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	2 cut(s)	143, 371
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	390
SmlI	CTYRAG	2 cut(s)	284, 446
SmoI	CTYRAG	2 cut(s)	284, 446
Sse9I	AATT	1 cut(s)	308
SsiI	CCGC	1 cut(s)	242
StyD4I	CCNGG	1 cut(s)	170
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	4 cut(s)	11, 24, 251, 300
TasI	AATT	1 cut(s)	308
TatI	WGTACW	1 cut(s)	396
Tru1I	TTAA	2 cut(s)	285, 466
Tru9I	TTAA	2 cut(s)	285, 466
TseFI	GTSAC	5 cut(s)	22, 124, 244, 346, 409
TseI	GCWGC	2 cut(s)	280, 422
Tsp45I	GTSAC	5 cut(s)	22, 124, 244, 346, 409
TspDTI	ATGAA	1 cut(s)	416
Van91I	CCANNNNNTGG	1 cut(s)	238
Vha464I	CTTAAG	1 cut(s)	284
XagI	CCTNNNNNAGG	1 cut(s)	39
XceI	RCATGY	1 cut(s)	186
ZraI	GACGTC	2 cut(s)	9, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.