Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000504

Physical Location & Seq

Genomic Coordinates Forward (+)

31183832 .. 31184712

Gene Structure 881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G328000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCTCTGCACGGTTTTATTGGGACTCAAATAGAGCTCAAGTCTCCTGCTGATAAGTTCTACAAAATCTTCAAGGGTCAAGCCCACCTCATCCCAAATGTTTCTTCTGGCCATATCAAAGGTGTTCAGGTGCATGAAGGAGATTGGGAAACGCACGGCTCTGTTAAGATCTGGAATTATCATCTAGGGAACGAAGTTGGGACATTCAAGGAAAAGGTCGAGTACGACGACGAGAACAAGGCGGCAACTTTGATTGGATTGGACGGAGAAATGTTCAAGTATTACAAGAGCATTAAGGGCATCTATCAGTTCGCTCAAAAGGGTGATGTTAGCGTTGCCAACCTGACGATTCACTATGAGAAACGGAATGCGAATGTTGAAGCTCCAGATAGATATGTTGGTCTCATGGTTACCCTCGTCAGGGATCTTGATGCTCACTTTGCCAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010228 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0080184

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

151

Amino Acids

16.9

Weight (kDa)

6.7

Isoelectric Point (pI)

17.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca	FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica	MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica	Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis	pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis	RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata	RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora	Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii	Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa	Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha	Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana	Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	1 cut(s)	432
AcoI	YGGCCR	1 cut(s)	109
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	420, 421
AgsI	TTSAA	4 cut(s)	73, 208, 277, 380
AjuI	GAANNNNNNNTTGG	2 cut(s)	88, 120
AluBI	AGCT	2 cut(s)	37, 383
AluI	AGCT	2 cut(s)	37, 383
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	2 cut(s)	48, 407
AlwI	GGATC	1 cut(s)	432
AoxI	GGCC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	39
BceAI	ACGGC	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	48, 407
BfaI	CTAG	1 cut(s)	185
BglII	AGATCT	1 cut(s)	168
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
BmsI	GCATC	2 cut(s)	309, 421
BpmI	CTGGAG	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	2 cut(s)	420, 421
BseDI	CCNNGG	1 cut(s)	444
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	2 cut(s)	420, 421
BshFI	GGCC	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	39
BslFI	GGGAC	2 cut(s)	37, 214
BslI	CCNNNNNNNGG	2 cut(s)	420, 421
BsmAI	GTCTC	2 cut(s)	48, 407
BsmFI	GGGAC	2 cut(s)	37, 214
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	111
Bso31I	GGTCTC	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	168, 424
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	432
BspTNI	GGTCTC	1 cut(s)	407
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	2 cut(s)	168, 424
BssT1I	CCWWGG	1 cut(s)	444
Bst4CI	ACNGT	1 cut(s)	14
BstEII	GGTNACC	1 cut(s)	409
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	2 cut(s)	171, 427
BstMAI	GTCTC	2 cut(s)	48, 407
BstMBI	GATC	2 cut(s)	168, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	297, 440
BstPI	GGTNACC	1 cut(s)	409
BstX2I	RGATCY	2 cut(s)	168, 424
BstYI	RGATCY	2 cut(s)	168, 424
BsuRI	GGCC	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	2 cut(s)	134, 406
CviJI	RGCY	6 cut(s)	5, 37, 83, 111, 159, 383
CviKI_1	RGCY	6 cut(s)	5, 37, 83, 111, 159, 383
CviQI	GTAC	1 cut(s)	223
DpnI	GATC	2 cut(s)	170, 426
DpnII	GATC	2 cut(s)	168, 424
EaeI	YGGCCR	1 cut(s)	109
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	407
Eco53kI	GAGCTC	1 cut(s)	37
Eco91I	GGTNACC	1 cut(s)	409
EcoICRI	GAGCTC	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	2 cut(s)	137, 409
FaiI	YATR	6 cut(s)	114, 135, 357, 396, 407, 451
FaqI	GGGAC	2 cut(s)	37, 214
FatI	CATG	2 cut(s)	133, 405
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	137, 409
HinfI	GANTC	2 cut(s)	25, 349
HphI	GGTGA	1 cut(s)	335
Hpy188III	TCNNGA	3 cut(s)	172, 386, 428
Hpy99I	CGWCG	2 cut(s)	230, 233
HpyAV	CCTTC	1 cut(s)	131
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4V	TGCA	2 cut(s)	10, 133
HpyF10VI	GCNNNNNNNGC	2 cut(s)	297, 440
Hsp92II	CATG	2 cut(s)	137, 409
Kzo9I	GATC	2 cut(s)	168, 424
LmnI	GCTCC	1 cut(s)	388
LpnPI	CCDG	7 cut(s)	60, 93, 113, 157, 356, 399, 406
LweI	GCATC	2 cut(s)	309, 421
MaeI	CTAG	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	2 cut(s)	170, 426
MboI	GATC	2 cut(s)	168, 424
MboII	GAAGA	2 cut(s)	61, 96
MflI	RGATCY	2 cut(s)	168, 424
MhlI	GDGCHC	1 cut(s)	39
MlsI	TGGCCA	1 cut(s)	111
MluCI	AATT	1 cut(s)	175
MluNI	TGGCCA	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	19
MnlI	CCTC	2 cut(s)	98, 425
Mox20I	TGGCCA	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	111
MseI	TTAA	2 cut(s)	165, 294
Msp20I	TGGCCA	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	373
MwoI	GCNNNNNNNGC	2 cut(s)	297, 440
NdeII	GATC	2 cut(s)	168, 424
NlaIII	CATG	2 cut(s)	137, 409
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	349
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	39
PspEI	GGTNACC	1 cut(s)	409
PsuI	RGATCY	2 cut(s)	168, 424
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	165, 294
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	2 cut(s)	168, 424
SchI	GAGTC	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	7 cut(s)	39, 90, 124, 132, 219, 345, 385
SfaNI	GCATC	2 cut(s)	309, 421
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	1 cut(s)	185
SstI	GAGCTC	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	1 cut(s)	14
TaqI	TCGA	1 cut(s)	219
TasI	AATT	1 cut(s)	175
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	2 cut(s)	165, 294
Tru9I	TTAA	2 cut(s)	165, 294
TspDTI	ATGAA	1 cut(s)	150
TspGWI	ACGGA	2 cut(s)	279, 379
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.