MD16G1025800.v1.1

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000504
Physical Location & Seq
Reverse (-)
1839602 .. 1840796
1195 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1025800.v1.1.491

Sequence Viewer

Length: 453 bp
ATGGTTTTGCATGGTAAAATTGGGACTGAAATAGAAATTAAGGCACCAGCTGACAAGTTGTACAACATGTTCAAGAGCGCCCACCTCATCCCAAACATCTCTAATACCCATATCAAAGGAGTTGATGTGCATGAAGGAGATTGGGAAACACACGGCTCTGTTAAGATTTGGAAATATGAACTAGGGGATCATGTCGGGATATTCAAGGAACAGGTGGAGCTAGACGATGAGAACAAGGCTGCAACTCTGAAAGGATTGGAAGGAGAAGTGTTCAAGTATTATAAGAGCTTCAAGGGTGTCTATAAATTCACTCAAAAAGATGAAGGCACCTGCATTGCCAACCTGTGGATCGAATACGAGAAACTGAATGAGAATGTTGAAGCTCCAGATAGATATGTCGGTTTGATGGTTAAACTCGTCCAGGATCTTGACGCTCACCTTCTGGGAGCATAA

Protein Analysis

151

Amino Acids

17.05

Weight (kDa)

5.47

Isoelectric Point (pI)

11.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 4 - 148 1e-48 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 282
AarI CACCTGC 1 cut(s) 338
Acc36I ACCTGC 1 cut(s) 338
AccB1I GGYRCC 2 cut(s) 43, 326
AccB7I CCANNNNNTGG 1 cut(s) 345
AclWI GGATC 3 cut(s) 195, 356, 432
AcsI RAATTY 1 cut(s) 305
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 345
AflIII ACRYGT 1 cut(s) 66
AgsI TTSAA 5 cut(s) 73, 205, 274, 292, 380
AjnI CCWGG 1 cut(s) 420
AluBI AGCT 4 cut(s) 50, 220, 288, 383
AluI AGCT 4 cut(s) 50, 220, 288, 383
AlwI GGATC 3 cut(s) 195, 356, 432
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 305
AspLEI GCGC 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 428
BanI GGYRCC 2 cut(s) 43, 326
BbvI GCAGC 1 cut(s) 226
BccI CCATC 1 cut(s) 400
BceAI ACGGC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 422
BfaI CTAG 2 cut(s) 182, 221
BfoI RGCGCY 1 cut(s) 81
BfuAI ACCTGC 1 cut(s) 338
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme1390I CCNGG 1 cut(s) 422
BmiI GGNNCC 2 cut(s) 45, 328
BmrFI CCNGG 1 cut(s) 422
BpmI CTGGAG 1 cut(s) 369
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse3DI GCAATG 1 cut(s) 333
BseBI CCWGG 1 cut(s) 422
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMI GCAATG 1 cut(s) 333
BseXI GCAGC 1 cut(s) 226
BshNI GGYRCC 2 cut(s) 43, 326
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 345
BsmFI GGGAC 1 cut(s) 37
Bsp1407I TGTACA 1 cut(s) 60
Bsp143I GATC 3 cut(s) 187, 348, 424
BspLI GGNNCC 2 cut(s) 45, 328
BspMI ACCTGC 1 cut(s) 338
BspPI GGATC 3 cut(s) 195, 356, 432
BspT107I GGYRCC 2 cut(s) 43, 326
BsrDI GCAATG 1 cut(s) 333
BsrGI TGTACA 1 cut(s) 60
BssMI GATC 3 cut(s) 187, 348, 424
Bst2UI CCWGG 1 cut(s) 422
BstAUI TGTACA 1 cut(s) 60
BstF5I GGATG 1 cut(s) 87
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 3 cut(s) 190, 351, 427
BstMBI GATC 3 cut(s) 187, 348, 424
BstNI CCWGG 1 cut(s) 422
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 420
BstV1I GCAGC 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
BtsCI GGATG 1 cut(s) 87
BveI ACCTGC 1 cut(s) 338
CfoI GCGC 1 cut(s) 80
CseI GACGC 1 cut(s) 440
Csp6I GTAC 1 cut(s) 61
CviAII CATG 4 cut(s) 11, 67, 131, 191
CviJI RGCY 6 cut(s) 50, 156, 220, 239, 288, 383
CviKI_1 RGCY 6 cut(s) 50, 156, 220, 239, 288, 383
CviQI GTAC 1 cut(s) 61
DpnI GATC 3 cut(s) 189, 350, 426
DpnII GATC 3 cut(s) 187, 348, 424
EcoRII CCWGG 1 cut(s) 420
FaeI CATG 4 cut(s) 14, 70, 134, 194
FaqI GGGAC 1 cut(s) 37
FatI CATG 4 cut(s) 10, 66, 130, 190
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 2 cut(s) 182, 221
GlaI GCGC 1 cut(s) 79
GluI GCNGC 1 cut(s) 240
GsuI CTGGAG 1 cut(s) 369
HaeII RGCGCY 1 cut(s) 81
HgaI GACGC 1 cut(s) 440
HhaI GCGC 1 cut(s) 80
Hin1II CATG 4 cut(s) 14, 70, 134, 194
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HphI GGTGA 1 cut(s) 428
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 4 cut(s) 73, 196, 386, 428
HpyAV CCTTC 4 cut(s) 128, 254, 317, 449
HpyCH4V TGCA 4 cut(s) 10, 130, 242, 333
Hsp92II CATG 4 cut(s) 14, 70, 134, 194
HspAI GCGC 1 cut(s) 78
Kzo9I GATC 3 cut(s) 187, 348, 424
LmnI GCTCC 3 cut(s) 217, 388, 446
LpnPI CCDG 8 cut(s) 60, 197, 343, 356, 399, 407, 428, 434
Lsp1109I GCAGC 1 cut(s) 226
MaeI CTAG 2 cut(s) 182, 221
MalI GATC 3 cut(s) 189, 350, 426
MboI GATC 3 cut(s) 187, 348, 424
MflI RGATCY 1 cut(s) 424
MluCI AATT 3 cut(s) 18, 36, 305
MnlI CCTC 1 cut(s) 95
MseI TTAA 3 cut(s) 39, 162, 411
MspA1I CMGCKG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 422
MvaI CCWGG 1 cut(s) 422
NdeII GATC 3 cut(s) 187, 348, 424
NlaIII CATG 4 cut(s) 14, 70, 134, 194
NlaIV GGNNCC 2 cut(s) 45, 328
NspI RCATGY 1 cut(s) 70
PaqCI CACCTGC 1 cut(s) 338
PciI ACATGT 1 cut(s) 66
PflMI CCANNNNNTGG 1 cut(s) 345
PfoI TCCNGGA 1 cut(s) 420
PkrI GCNGC 1 cut(s) 241
PscI ACATGT 1 cut(s) 66
PsiI TTATAA 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 420
PspGI CCWGG 1 cut(s) 420
PspN4I GGNNCC 2 cut(s) 45, 328
PsrI GAACNNNNNNTAC 2 cut(s) 53, 85
PsuI RGATCY 1 cut(s) 424
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SaqAI TTAA 3 cut(s) 39, 162, 411
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 3 cut(s) 187, 348, 424
ScrFI CCNGG 1 cut(s) 422
SetI ASST 9 cut(s) 52, 87, 216, 222, 290, 332, 345, 385, 441
Sse9I AATT 3 cut(s) 18, 36, 305
SspMI CTAG 2 cut(s) 182, 221
StyD4I CCNGG 1 cut(s) 420
TaqI TCGA 1 cut(s) 351
TasI AATT 3 cut(s) 18, 36, 305
TatI WGTACW 1 cut(s) 60
Tru1I TTAA 3 cut(s) 39, 162, 411
Tru9I TTAA 3 cut(s) 39, 162, 411
TseI GCWGC 1 cut(s) 239
TspDTI ATGAA 3 cut(s) 147, 192, 336
Van91I CCANNNNNTGG 1 cut(s) 345
XapI RAATTY 1 cut(s) 305
XceI RCATGY 1 cut(s) 70
XspI CTAG 2 cut(s) 182, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.