Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000504

Physical Location & Seq

Genomic Coordinates Forward (+)

239669 .. 240687

Gene Structure 1019 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCGACATCGGGAACATATGTGACGGAGGTTCCATTGAAAGGATCGGCGGATAAACACTACAAGCGGTGGAGAGATGAGAACCACCTCTTCCCCGATGCCATCGGCCACCACATCCAAGGTGTCACTGTCCACGACGGTGAATGGGACTCTCATGAAGCCATCAAGATTTGGAACTATACATGCGATGGGAAACCGGAAGTGTTCAAGGAAAGGAAAGAGATAGACGATGAGAATATGGTGATAACGTTCAGAGGACTAGAAGGTCACGTCATGGAGCAGCTTAAAGTGTATGATCTCATATATCAGTTCAGCCAAAAGTCTCCCGATGATATCGTATGCAAGATCACAATGATTTGGGAGAAGCGAACCGATGATTCGCCTGAGCCTAGCAACTACATGAAGTTCCTCAAAAGCGTTGTTGCTGACATGGACGAGCATGTTCTCAAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010228 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0080184

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

151

Amino Acids

17.6

Weight (kDa)

5.3

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	2 - 150	1.5e-67	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca	FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica	MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica	Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis	pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis	RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata	RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora	Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii	Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa	Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha	Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana	Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	264
AciI	CCGC	2 cut(s)	50, 67
AclI	AACGTT	1 cut(s)	248
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	2 cut(s)	40, 208
AjiI	CACGTC	1 cut(s)	271
AleI	CACNNNNGTG	1 cut(s)	138
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	152, 253
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	3 cut(s)	110, 170, 182
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	2 cut(s)	260, 390
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
BmgBI	CACGTC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	33
BmsI	GCATC	1 cut(s)	88
Bpu10I	CCTNAGC	1 cut(s)	384
BsaJI	CCNNGG	1 cut(s)	118
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	375
BseXI	GCAGC	1 cut(s)	292
BshFI	GGCC	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	327
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	44, 295, 345
BspACI	CCGC	2 cut(s)	50, 67
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	3 cut(s)	44, 295, 345
BssT1I	CCWWGG	1 cut(s)	118
Bst4CI	ACNGT	2 cut(s)	130, 140
Bst6I	CTCTTC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	114
BstKTI	GATC	3 cut(s)	47, 298, 348
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	3 cut(s)	44, 295, 345
BstNSI	RCATGY	2 cut(s)	186, 443
BstV1I	GCAGC	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	108
BtgZI	GCGATG	1 cut(s)	201
BtrI	CACGTC	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	126
CciI	TCATGA	1 cut(s)	154
CviAII	CATG	6 cut(s)	155, 183, 274, 400, 430, 440
CviJI	RGCY	6 cut(s)	108, 161, 283, 315, 388, 452
CviKI_1	RGCY	6 cut(s)	108, 161, 283, 315, 388, 452
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	3 cut(s)	46, 297, 347
DpnII	GATC	3 cut(s)	44, 295, 345
DrdI	GACNNNNNNGTC	1 cut(s)	264
DseDI	GACNNNNNNGTC	1 cut(s)	264
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	334
EcoRV	GATATC	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	6 cut(s)	158, 186, 277, 403, 433, 443
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	6 cut(s)	154, 182, 273, 399, 429, 439
FauNDI	CATATG	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	281
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	281
FspBI	CTAG	2 cut(s)	260, 390
GluI	GCNGC	1 cut(s)	281
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	197
Hin1II	CATG	6 cut(s)	158, 186, 277, 403, 433, 443
HinfI	GANTC	2 cut(s)	149, 377
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	2 cut(s)	152, 253
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	254
Hpy188III	TCNNGA	4 cut(s)	12, 155, 166, 326
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	2 cut(s)	130, 140
HpyCH4IV	ACGT	2 cut(s)	248, 270
HpyCH4V	TGCA	1 cut(s)	342
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	2 cut(s)	248, 270
Hsp92II	CATG	6 cut(s)	158, 186, 277, 403, 433, 443
Kzo9I	GATC	3 cut(s)	44, 295, 345
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	2 cut(s)	210, 396
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	2 cut(s)	260, 390
MaeII	ACGT	2 cut(s)	248, 270
MaeIII	GTNAC	3 cut(s)	22, 124, 266
MalI	GATC	3 cut(s)	46, 297, 347
MboI	GATC	3 cut(s)	44, 295, 345
MboII	GAAGA	1 cut(s)	82
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	4 cut(s)	22, 98, 248, 419
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	138
MspI	CCGG	1 cut(s)	197
NdeI	CATATG	1 cut(s)	19
NdeII	GATC	3 cut(s)	44, 295, 345
NlaIII	CATG	6 cut(s)	158, 186, 277, 403, 433, 443
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	3 cut(s)	22, 124, 266
NspI	RCATGY	2 cut(s)	186, 443
OliI	CACNNNNGTG	1 cut(s)	138
PagI	TCATGA	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	377
PkrI	GCNGC	1 cut(s)	282
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Psp1406I	AACGTT	1 cut(s)	248
PspN4I	GGNNCC	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	3 cut(s)	44, 295, 345
SchI	GAGTC	1 cut(s)	143
SetI	ASST	7 cut(s)	33, 90, 124, 251, 268, 273, 285
SfaNI	GCATC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	138
SsiI	CCGC	2 cut(s)	50, 67
SspMI	CTAG	2 cut(s)	260, 390
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	2 cut(s)	130, 140
TaiI	ACGT	2 cut(s)	251, 273
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	3 cut(s)	22, 124, 266
TseI	GCWGC	1 cut(s)	280
Tsp45I	GTSAC	3 cut(s)	22, 124, 266
TspDTI	ATGAA	2 cut(s)	171, 416
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	133
XceI	RCATGY	2 cut(s)	186, 443
XspI	CTAG	2 cut(s)	260, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.