Prupe.1G328400_v2.0.a1

Pathogenesis-related protein Bet v I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000504
Physical Location & Seq
Forward (+)
31206632 .. 31208687
2056 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G328400.1

Sequence Viewer

Length: 450 bp
ATGGCTTTGGTTGGTAAGCTTGAAACAGAAGTAGAGATAAACACGCCTGCTGATAAGTTTTACAAAATATTCGCGAGCCAAATAATGCACCTACTTCCTAACGTCTCCTCTGACAAAATACAAGGGGTTGAGCTACATGAAGGTGATTGGGAGACTGCCGGTTCTGTCAAGCATTGGGATTATACCTTGGACAGGAGCTCATTGAGTTTAAAGGAGACAGTTGAAGCGATAGATGAGGAAAACAAGACAGTGACATTTCAACGTTTTGGATGGAGAAATATTGAAGCATTACAAGAGCTTCAAGAGACAGAAAAGACCAATGGAGGCAGTTTGGGGAAATGGATTCTGGACTATGAGGAGGTGAAGGACGAAATCCCAGCTCCGCAATCTTATCAGGATTTTGCAGTTAACATCACCGAAGATCTTGACGCTCATCTTGTCAATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

150

Amino Acids

16.94

Weight (kDa)

4.46

Isoelectric Point (pI)

56.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 74
AciI CCGC 1 cut(s) 383
AclI AACGTT 1 cut(s) 262
AfiI CCNNNNNNNGG 1 cut(s) 192
AgsI TTSAA 5 cut(s) 23, 224, 260, 284, 302
AluBI AGCT 5 cut(s) 19, 133, 198, 298, 380
AluI AGCT 5 cut(s) 19, 133, 198, 298, 380
Alw21I GWGCWC 1 cut(s) 200
Alw26I GTCTC 4 cut(s) 109, 146, 209, 299
AsuHPI GGTGA 3 cut(s) 155, 373, 406
BanII GRGCYC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 200
BccI CCATC 1 cut(s) 264
BcoDI GTCTC 4 cut(s) 109, 146, 209, 299
BglII AGATCT 1 cut(s) 421
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse118I RCCGGY 1 cut(s) 158
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 275
BseLI CCNNNNNNNGG 1 cut(s) 192
BseRI GAGGAG 2 cut(s) 97, 371
BseYI CCCAGC 1 cut(s) 376
Bsh1236I CGCG 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 200
BsiSI CCGG 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 192
BsmAI GTCTC 4 cut(s) 109, 146, 209, 299
BsmBI CGTCTC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 1 cut(s) 421
Bsp68I TCGCGA 1 cut(s) 74
BspACI CCGC 1 cut(s) 383
BspFNI CGCG 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 158
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 1 cut(s) 421
BssT1I CCWWGG 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 220, 250
BstC8I GCNNGC 2 cut(s) 48, 76
BstENI CCTNNNNNAGG 1 cut(s) 190
BstF5I GGATG 1 cut(s) 275
BstFNI CGCG 1 cut(s) 74
BstKTI GATC 1 cut(s) 424
BstMAI GTCTC 4 cut(s) 109, 146, 209, 299
BstMBI GATC 1 cut(s) 421
BstUI CGCG 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BtsCI GGATG 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 255
BtuMI TCGCGA 1 cut(s) 74
Cac8I GCNNGC 2 cut(s) 48, 76
Cfr10I RCCGGY 1 cut(s) 158
CseI GACGC 1 cut(s) 437
CviAII CATG 2 cut(s) 137, 447
CviJI RGCY 7 cut(s) 5, 19, 78, 133, 198, 298, 380
CviKI_1 RGCY 7 cut(s) 5, 19, 78, 133, 198, 298, 380
DpnI GATC 1 cut(s) 423
DpnII GATC 1 cut(s) 421
DraI TTTAAA 1 cut(s) 210
Ecl136II GAGCTC 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 198
EcoNI CCTNNNNNAGG 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 186
EcoT22I ATGCAT 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 186
Esp3I CGTCTC 1 cut(s) 109
FaeI CATG 2 cut(s) 140, 450
FaiI YATR 4 cut(s) 138, 183, 354, 448
FatI CATG 2 cut(s) 136, 446
FokI GGATG 1 cut(s) 282
FriOI GRGCYC 1 cut(s) 200
GsaI CCCAGC 1 cut(s) 380
HapII CCGG 1 cut(s) 159
HgaI GACGC 1 cut(s) 437
Hin1II CATG 2 cut(s) 140, 450
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 1 cut(s) 343
HpaI GTTAAC 1 cut(s) 409
HpaII CCGG 1 cut(s) 159
HphI GGTGA 3 cut(s) 155, 373, 406
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 5 cut(s) 73, 302, 347, 395, 425
Hpy8I GTNNAC 1 cut(s) 409
HpyAV CCTTC 2 cut(s) 134, 358
HpyCH4III ACNGT 2 cut(s) 220, 250
HpyCH4IV ACGT 2 cut(s) 102, 262
HpyCH4V TGCA 3 cut(s) 88, 404, 446
HpySE526I ACGT 2 cut(s) 102, 262
Hsp92II CATG 2 cut(s) 140, 450
KspAI GTTAAC 1 cut(s) 409
Kzo9I GATC 1 cut(s) 421
LmnI GCTCC 2 cut(s) 195, 385
LpnPI CCDG 6 cut(s) 60, 172, 178, 332, 380, 390
MaeII ACGT 2 cut(s) 102, 262
MaeIII GTNAC 1 cut(s) 250
MalI GATC 1 cut(s) 423
MboI GATC 1 cut(s) 421
MboII GAAGA 1 cut(s) 431
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 1 cut(s) 200
MnlI CCTC 5 cut(s) 118, 229, 317, 349, 352
Mph1103I ATGCAT 1 cut(s) 448
MseI TTAA 2 cut(s) 209, 408
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 1 cut(s) 159
MvnI CGCG 1 cut(s) 74
NdeII GATC 1 cut(s) 421
NlaIII CATG 2 cut(s) 140, 450
NmuCI GTSAC 1 cut(s) 250
NruI TCGCGA 1 cut(s) 74
NsiI ATGCAT 1 cut(s) 448
PfeI GAWTC 1 cut(s) 343
Psp124BI GAGCTC 1 cut(s) 200
Psp1406I AACGTT 1 cut(s) 262
PspFI CCCAGC 1 cut(s) 376
PsuI RGATCY 1 cut(s) 421
RruI TCGCGA 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 141
SacI GAGCTC 1 cut(s) 200
SaqAI TTAA 2 cut(s) 209, 408
Sau3AI GATC 1 cut(s) 421
SduI GDGCHC 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 141
SsiI CCGC 1 cut(s) 383
SspI AATATT 2 cut(s) 69, 280
SstI GAGCTC 1 cut(s) 200
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 2 cut(s) 220, 250
TaiI ACGT 2 cut(s) 105, 265
TfiI GAWTC 1 cut(s) 343
Tru1I TTAA 2 cut(s) 209, 408
Tru9I TTAA 2 cut(s) 209, 408
TscAI CASTG 1 cut(s) 255
TseFI GTSAC 1 cut(s) 250
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 1 cut(s) 153
TspRI CASTG 1 cut(s) 255
XagI CCTNNNNNAGG 1 cut(s) 190
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.