RchiOBHm_Chr4g0441721

Pathogenesis-related protein Bet v I family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000504
Physical Location & Seq
Forward (+)
63515498 .. 63516103
606 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40952

Sequence Viewer

Length: 465 bp
ATGGCTTCGTTAGATGGTAAACTCGAGACAGAAGTAGAGATAAGCTCAGGTGCTGATAAGTTTTACAAAATTTTCACAAGCCAAATGCACCTTCTTCCCAACGTCTCCTCTGACAAAATACAAGGCGTTGAGCTTCATGAAGGTGATTGGGAGACTGTGGGTTCTGTCAAGCACTGGGATTATACCTTGGATGGAAGCGTGTTAAGTTTAAAGGAGACTGTTGAGGCGATCGATGAAGAAAATAAGTCGGTGACGTTCAACGTTGTGGATGGGGAAATCCTGAAGCATTACAAGAGCTTCAAGGTGACGCTTAAAGTAACAGAGAAGAGCGGAGGAGGAGGCAGTTTGGTAAAGTGGATTCTGGACTATGAGAAGGTGAGCGAGGAAATCCCTGCTCCACAGTCTTATCAAGATTTTGCTGTCAAGGTCACCGAAGATCTTGAAGCTCATCTTCTCACTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

154

Amino Acids

17.12

Weight (kDa)

4.7

Isoelectric Point (pI)

37.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 4 - 153 1.9e-55 Pathogenesis-related protein Bet v 1 family
Polyketide_cyc2 PF10604 7 - 145 2.7e-06 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 330
AciI CCGC 1 cut(s) 330
AclI AACGTT 1 cut(s) 261
AcsI RAATTY 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 302
AgsI TTSAA 3 cut(s) 259, 301, 443
AjuI GAANNNNNNNTTGG 2 cut(s) 75, 107
AluBI AGCT 4 cut(s) 45, 133, 297, 446
AluI AGCT 4 cut(s) 45, 133, 297, 446
Alw26I GTCTC 4 cut(s) 20, 109, 146, 209
AlwNI CAGNNNCTG 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 23
ApoI RAATTY 1 cut(s) 69
AsuHPI GGTGA 5 cut(s) 155, 262, 316, 388, 421
AvaI CYCGRG 1 cut(s) 23
BccI CCATC 3 cut(s) 8, 185, 263
BcoDI GTCTC 4 cut(s) 20, 109, 146, 209
BglII AGATCT 1 cut(s) 436
BmeT110I CYCGRG 1 cut(s) 23
BmrI ACTGGG 1 cut(s) 184
BmuI ACTGGG 1 cut(s) 184
BplI GAGNNNNNCTC 2 cut(s) 29, 61
Bpu10I CCTNAGC 1 cut(s) 46
Bsa29I ATCGAT 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 186
Bse1I ACTGG 1 cut(s) 179
BseCI ATCGAT 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 2 cut(s) 196, 274
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 179
BseRI GAGGAG 3 cut(s) 97, 348, 351
Bsh1285I CGRYCG 1 cut(s) 231
BshVI ATCGAT 1 cut(s) 231
BsiEI CGRYCG 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 23
BsmAI GTCTC 4 cut(s) 20, 109, 146, 209
BsmBI CGTCTC 1 cut(s) 109
BsoBI CYCGRG 1 cut(s) 23
Bsp143I GATC 2 cut(s) 228, 436
BspACI CCGC 1 cut(s) 330
BspCNI CTCAG 1 cut(s) 59
BspDI ATCGAT 1 cut(s) 231
BspHI TCATGA 1 cut(s) 136
BspQI GCTCTTC 1 cut(s) 320
BsrBI CCGCTC 1 cut(s) 330
BsrI ACTGG 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 2 cut(s) 228, 436
BssT1I CCWWGG 1 cut(s) 186
Bst4CI ACNGT 3 cut(s) 157, 220, 402
Bst6I CTCTTC 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 46
BstEII GGTNACC 1 cut(s) 427
BstF5I GGATG 2 cut(s) 196, 274
BstKTI GATC 2 cut(s) 231, 439
BstMAI GTCTC 4 cut(s) 20, 109, 146, 209
BstMBI GATC 2 cut(s) 228, 436
BstMCI CGRYCG 1 cut(s) 231
BstPI GGTNACC 1 cut(s) 427
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
Bsu15I ATCGAT 1 cut(s) 231
BsuTUI ATCGAT 1 cut(s) 231
BtsCI GGATG 2 cut(s) 196, 274
BtsI GCAGTG 1 cut(s) 456
BtsIMutI CAGTG 2 cut(s) 172, 456
CaiI CAGNNNCTG 1 cut(s) 53
CciI TCATGA 1 cut(s) 136
ClaI ATCGAT 1 cut(s) 231
CseI GACGC 1 cut(s) 316
CviAII CATG 2 cut(s) 137, 462
CviJI RGCY 6 cut(s) 5, 45, 81, 133, 297, 446
CviKI_1 RGCY 6 cut(s) 5, 45, 81, 133, 297, 446
DdeI CTNAG 1 cut(s) 46
DpnI GATC 2 cut(s) 230, 438
DpnII GATC 2 cut(s) 228, 436
DraI TTTAAA 1 cut(s) 210
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 302
Eco88I CYCGRG 1 cut(s) 23
Eco91I GGTNACC 1 cut(s) 427
EcoO65I GGTNACC 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
Esp3I CGTCTC 1 cut(s) 109
FaeI CATG 2 cut(s) 140, 465
FaiI YATR 4 cut(s) 138, 183, 369, 463
FalI AAGNNNNNCTT 1 cut(s) 435
FatI CATG 2 cut(s) 136, 461
FokI GGATG 2 cut(s) 203, 281
HgaI GACGC 1 cut(s) 316
Hin1II CATG 2 cut(s) 140, 465
HinfI GANTC 1 cut(s) 358
HphI GGTGA 5 cut(s) 155, 262, 316, 388, 421
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 6 cut(s) 25, 137, 280, 362, 410, 440
Hpy8I GTNNAC 1 cut(s) 20
HpyAV CCTTC 3 cut(s) 101, 134, 367
HpyCH4III ACNGT 3 cut(s) 157, 220, 402
HpyCH4IV ACGT 3 cut(s) 102, 254, 261
HpyCH4V TGCA 2 cut(s) 88, 461
HpyF3I CTNAG 1 cut(s) 46
HpySE526I ACGT 3 cut(s) 102, 254, 261
Hsp92II CATG 2 cut(s) 140, 465
Kzo9I GATC 2 cut(s) 228, 436
LguI GCTCTTC 1 cut(s) 320
LmnI GCTCC 1 cut(s) 400
LpnPI CCDG 5 cut(s) 33, 160, 293, 347, 405
MaeII ACGT 3 cut(s) 102, 254, 261
MaeIII GTNAC 4 cut(s) 250, 304, 316, 427
MalI GATC 2 cut(s) 230, 438
MbiI CCGCTC 1 cut(s) 330
MboI GATC 2 cut(s) 228, 436
MboII GAAGA 5 cut(s) 86, 248, 337, 443, 446
MflI RGATCY 1 cut(s) 436
MluCI AATT 1 cut(s) 69
MnlI CCTC 6 cut(s) 118, 217, 326, 329, 332, 376
MseI TTAA 3 cut(s) 203, 209, 312
MslI CAYNNNNRTG 1 cut(s) 141
NdeII GATC 2 cut(s) 228, 436
NlaIII CATG 2 cut(s) 140, 465
NmuCI GTSAC 3 cut(s) 250, 304, 427
PaeR7I CTCGAG 1 cut(s) 23
PagI TCATGA 1 cut(s) 136
PciSI GCTCTTC 1 cut(s) 320
PfeI GAWTC 1 cut(s) 358
Ple19I CGATCG 1 cut(s) 231
Psp1406I AACGTT 1 cut(s) 261
PspEI GGTNACC 1 cut(s) 427
PstNI CAGNNNCTG 1 cut(s) 53
PsuI RGATCY 1 cut(s) 436
PvuI CGATCG 1 cut(s) 231
RseI CAYNNNNRTG 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 320
SaqAI TTAA 3 cut(s) 203, 209, 312
Sau3AI GATC 2 cut(s) 228, 436
Sfr274I CTCGAG 1 cut(s) 23
SlaI CTCGAG 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 1 cut(s) 69
SsiI CCGC 1 cut(s) 330
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 3 cut(s) 157, 220, 402
TaiI ACGT 3 cut(s) 105, 257, 264
TaqI TCGA 2 cut(s) 24, 231
TasI AATT 1 cut(s) 69
TfiI GAWTC 1 cut(s) 358
Tru1I TTAA 3 cut(s) 203, 209, 312
Tru9I TTAA 3 cut(s) 203, 209, 312
TscAI CASTG 2 cut(s) 179, 463
TseFI GTSAC 3 cut(s) 250, 304, 427
Tsp45I GTSAC 3 cut(s) 250, 304, 427
TspDTI ATGAA 3 cut(s) 125, 153, 249
TspRI CASTG 2 cut(s) 179, 463
XapI RAATTY 1 cut(s) 69
XhoI CTCGAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.