RLG00000006075

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000504
Physical Location & Seq
Reverse (-)
4141698 .. 4142415
718 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006075

Sequence Viewer

Length: 366 bp
ATGGCTTTGAGTAGCAGTACTACTGGCAACCTGGAGACTCTGGAGGCAGTGGTAGAGATCAAATCCTCAGCTGATAAATTGTACGCGATCATAAGCAACGAGCACCATAATGTTCCCAAAGCCTCATCTGATAATGTACACGACGTTGCAGTACATGAAGGGATTTATGTTACAAATGATCGATCTACAGATGGAACTGTTGAGACACTTAAGGAGAAGGTGGAGATAGATGAAGCAAATAAGAGGGTGAGTCTCACAGCATTGGAGGGACATGTGCTGGAGCAATACAGAAGCTATAAGATTATCTTTCAGGTCTCTCCAAAGAGTGATAAAGGAGATAAGAATGAATTGGATAAAGTATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

122

Amino Acids

13.33

Weight (kDa)

5.15

Isoelectric Point (pI)

26.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 12 - 111 6.5e-24 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 86
AfaI GTAC 4 cut(s) 19, 83, 138, 153
AflII CTTAAG 1 cut(s) 209
AflIII ACRYGT 1 cut(s) 271
AjnI CCWGG 1 cut(s) 30
AluBI AGCT 2 cut(s) 71, 294
AluI AGCT 2 cut(s) 71, 294
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 4 cut(s) 29, 197, 257, 319
AsuHPI GGTGA 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 105
BbvCI CCTCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 32
BcoDI GTCTC 4 cut(s) 29, 197, 257, 319
BfmI CTRYAG 1 cut(s) 186
BfrI CTTAAG 1 cut(s) 209
BmcAI AGTACT 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 32
BpmI CTGGAG 3 cut(s) 53, 62, 299
Bpu10I CCTNAGC 1 cut(s) 67
Bsa29I ATCGAT 1 cut(s) 181
BsaI GGTCTC 1 cut(s) 319
Bse1I ACTGG 1 cut(s) 28
BseBI CCWGG 1 cut(s) 32
BseCI ATCGAT 1 cut(s) 181
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 28
Bsh1236I CGCG 1 cut(s) 86
BshVI ATCGAT 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 105
BslFI GGGAC 1 cut(s) 282
BsmAI GTCTC 4 cut(s) 29, 197, 257, 319
BsmFI GGGAC 1 cut(s) 282
Bso31I GGTCTC 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 105
Bsp1407I TGTACA 1 cut(s) 136
Bsp143I GATC 4 cut(s) 57, 87, 178, 182
BspCNI CTCAG 1 cut(s) 80
BspDI ATCGAT 1 cut(s) 181
BspFNI CGCG 1 cut(s) 86
BspHI TCATGA 1 cut(s) 362
BspTI CTTAAG 1 cut(s) 209
BspTNI GGTCTC 1 cut(s) 319
BsrGI TGTACA 1 cut(s) 136
BsrI ACTGG 1 cut(s) 28
BssMI GATC 4 cut(s) 57, 87, 178, 182
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 199
BstAFI CTTAAG 1 cut(s) 209
BstAUI TGTACA 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 67
BstFNI CGCG 1 cut(s) 86
BstKTI GATC 4 cut(s) 60, 90, 181, 185
BstMAI GTCTC 4 cut(s) 29, 197, 257, 319
BstMBI GATC 4 cut(s) 57, 87, 178, 182
BstNI CCWGG 1 cut(s) 32
BstNSI RCATGY 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 186
BstUI CGCG 1 cut(s) 86
Bsu15I ATCGAT 1 cut(s) 181
BsuTUI ATCGAT 1 cut(s) 181
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
CciI TCATGA 1 cut(s) 362
ClaI ATCGAT 1 cut(s) 181
Csp6I GTAC 4 cut(s) 18, 82, 137, 152
CviAII CATG 3 cut(s) 155, 272, 363
CviJI RGCY 4 cut(s) 5, 71, 122, 294
CviKI_1 RGCY 4 cut(s) 5, 71, 122, 294
CviQI GTAC 4 cut(s) 18, 82, 137, 152
DdeI CTNAG 1 cut(s) 67
DpnI GATC 4 cut(s) 59, 89, 180, 184
DpnII GATC 4 cut(s) 57, 87, 178, 182
Eco31I GGTCTC 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 30
FaeI CATG 3 cut(s) 158, 275, 366
FaiI YATR 7 cut(s) 92, 108, 156, 168, 273, 297, 364
FalI AAGNNNNNCTT 2 cut(s) 290, 322
FaqI GGGAC 1 cut(s) 282
FatI CATG 3 cut(s) 154, 271, 362
GsuI CTGGAG 3 cut(s) 53, 62, 299
Hin1II CATG 3 cut(s) 158, 275, 366
HinfI GANTC 2 cut(s) 37, 250
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 2 cut(s) 41, 363
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 2 cut(s) 152, 211
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 1 cut(s) 149
HpyF3I CTNAG 1 cut(s) 67
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 3 cut(s) 158, 275, 366
Kzo9I GATC 4 cut(s) 57, 87, 178, 182
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 6 cut(s) 9, 17, 26, 44, 263, 296
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 169
MalI GATC 4 cut(s) 59, 89, 180, 184
MboI GATC 4 cut(s) 57, 87, 178, 182
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 2 cut(s) 77, 347
MlyI GAGTC 2 cut(s) 31, 259
MnlI CCTC 5 cut(s) 37, 76, 133, 237, 259
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 71
MspCI CTTAAG 1 cut(s) 209
MspR9I CCNGG 1 cut(s) 32
MvaI CCWGG 1 cut(s) 32
MvnI CGCG 1 cut(s) 86
NdeII GATC 4 cut(s) 57, 87, 178, 182
NlaIII CATG 3 cut(s) 158, 275, 366
NspI RCATGY 1 cut(s) 275
PagI TCATGA 1 cut(s) 362
PciI ACATGT 1 cut(s) 271
PleI GAGTC 2 cut(s) 31, 258
PpsI GAGTC 2 cut(s) 31, 258
PscI ACATGT 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 4 cut(s) 19, 83, 138, 153
RsaNI GTAC 4 cut(s) 18, 82, 137, 152
RseI CAYNNNNRTG 1 cut(s) 108
SaqAI TTAA 1 cut(s) 210
Sau3AI GATC 4 cut(s) 57, 87, 178, 182
ScaI AGTACT 1 cut(s) 19
SchI GAGTC 2 cut(s) 31, 259
ScrFI CCNGG 1 cut(s) 32
SduI GDGCHC 1 cut(s) 105
SetI ASST 6 cut(s) 33, 73, 147, 222, 296, 315
SfcI CTRYAG 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 2 cut(s) 77, 347
StyD4I CCNGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 147
TaqI TCGA 1 cut(s) 181
TasI AATT 2 cut(s) 77, 347
TatI WGTACW 3 cut(s) 17, 136, 151
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 54
TspDTI ATGAA 3 cut(s) 171, 246, 360
TspRI CASTG 1 cut(s) 54
Vha464I CTTAAG 1 cut(s) 209
XceI RCATGY 1 cut(s) 275
ZrmI AGTACT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.