MD16G1026000.v1.1

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000504
Physical Location & Seq
Reverse (-)
1855411 .. 1856424
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1026000.v1.1.491

Sequence Viewer

Length: 480 bp
ATGGCTGTGAGTGGAGCTGGTACTTGCAAGCTGGAGACTCTGGAGGCTGAGGTAGAGATCAAAGCCAACGCTGATCAGCTGTACAAATTCATCAGCTACCAGCACCATGACGTCCCCAAAGCAGCCTCTGATAAAATACACGATGTTACGGTACATGAAGGTGACTGGGTAACTTCTGGCTCTGTCAAGCTCTGGAAATACACCATAGATGGAAATGTCGAGACTTACAAGGAAAAGGCGGAAATAGATGAAGCAAACAATCGGGTGAGTCTTATAGCTTTGGAAGGATCACATGTGCTGGACAATTACAAAAGCTTCAAGGTCACTTACCAGATCATCACTCCAAATAGTGAAGGAAGTTCTGTGAAAATTACTTTAGAATATGAAAAACTCAACGAGAACGATCCGCCTCCACAGAAGTTCCTCAGCTTTGCGGTCACTGTCATTAAAGATGTTGATGCACATCTTCTCAAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

160

Amino Acids

17.78

Weight (kDa)

5.13

Isoelectric Point (pI)

8.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 12 - 159 4.9e-49 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 114
AciI CCGC 3 cut(s) 239, 407, 434
AclWI GGATC 2 cut(s) 295, 398
AcsI RAATTY 1 cut(s) 86
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 3 cut(s) 22, 83, 153
AflIII ACRYGT 1 cut(s) 292
AgsI TTSAA 1 cut(s) 319
AluBI AGCT 8 cut(s) 17, 31, 79, 96, 190, 278, 315, 429
AluI AGCT 8 cut(s) 17, 31, 79, 96, 190, 278, 315, 429
Alw26I GTCTC 2 cut(s) 29, 215
AlwI GGATC 2 cut(s) 295, 398
AlwNI CAGNNNCTG 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 173, 277
BbvCI CCTCAGC 2 cut(s) 48, 425
BbvI GCAGC 1 cut(s) 134
BccI CCATC 1 cut(s) 203
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 2 cut(s) 29, 215
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 1 cut(s) 448
BmuI ACTGGG 1 cut(s) 175
BpmI CTGGAG 2 cut(s) 53, 62
Bpu10I CCTNAGC 2 cut(s) 48, 425
BpuEI CTTGAG 1 cut(s) 455
BsaBI GATNNNNATC 1 cut(s) 462
BsaHI GRCGYC 1 cut(s) 111
Bse1I ACTGG 1 cut(s) 170
Bse8I GATNNNNATC 1 cut(s) 462
BseJI GATNNNNATC 1 cut(s) 462
BseMII CTCAG 2 cut(s) 39, 439
BseNI ACTGG 1 cut(s) 170
BseXI GCAGC 1 cut(s) 134
BslFI GGGAC 1 cut(s) 98
BsmAI GTCTC 2 cut(s) 29, 215
BsmFI GGGAC 1 cut(s) 98
Bsp1407I TGTACA 1 cut(s) 81
Bsp143I GATC 5 cut(s) 57, 73, 287, 333, 403
BspACI CCGC 3 cut(s) 239, 407, 434
BspCNI CTCAG 2 cut(s) 40, 438
BspPI GGATC 2 cut(s) 295, 398
BsrGI TGTACA 1 cut(s) 81
BsrI ACTGG 1 cut(s) 170
BssMI GATC 5 cut(s) 57, 73, 287, 333, 403
BssNI GRCGYC 1 cut(s) 111
Bst4CI ACNGT 2 cut(s) 151, 442
BstACI GRCGYC 1 cut(s) 111
BstAUI TGTACA 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 29
BstDEI CTNAG 2 cut(s) 48, 425
BstKTI GATC 5 cut(s) 60, 76, 290, 336, 406
BstMAI GTCTC 2 cut(s) 29, 215
BstMBI GATC 5 cut(s) 57, 73, 287, 333, 403
BstNSI RCATGY 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 438
Cac8I GCNNGC 1 cut(s) 29
CaiI CAGNNNCTG 1 cut(s) 128
Csp6I GTAC 3 cut(s) 21, 82, 152
CviAII CATG 3 cut(s) 107, 155, 293
CviQI GTAC 3 cut(s) 21, 82, 152
DdeI CTNAG 2 cut(s) 48, 425
DpnI GATC 5 cut(s) 59, 75, 289, 335, 405
DpnII GATC 5 cut(s) 57, 73, 287, 333, 403
EciI GGCGGA 2 cut(s) 254, 396
FaeI CATG 3 cut(s) 110, 158, 296
FaiI YATR 6 cut(s) 108, 156, 206, 275, 294, 384
FaqI GGGAC 1 cut(s) 98
FatI CATG 3 cut(s) 106, 154, 292
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 123
GluI GCNGC 1 cut(s) 123
GsuI CTGGAG 2 cut(s) 53, 62
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 3 cut(s) 110, 158, 296
HindIII AAGCTT 1 cut(s) 313
HinfI GANTC 2 cut(s) 37, 268
HphI GGTGA 2 cut(s) 173, 277
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 3 cut(s) 41, 193, 220
HpyAV CCTTC 3 cut(s) 152, 278, 347
HpyCH4III ACNGT 2 cut(s) 151, 442
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 2 cut(s) 27, 461
HpyF3I CTNAG 2 cut(s) 48, 425
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 3 cut(s) 110, 158, 296
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 5 cut(s) 57, 73, 287, 333, 403
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 9 cut(s) 3, 17, 26, 113, 151, 162, 178, 284, 344
Lsp1109I GCAGC 1 cut(s) 134
LweI GCATC 1 cut(s) 448
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 5 cut(s) 145, 161, 169, 322, 436
MalI GATC 5 cut(s) 59, 75, 289, 335, 405
MboI GATC 5 cut(s) 57, 73, 287, 333, 403
MboII GAAGA 1 cut(s) 458
MluCI AATT 3 cut(s) 86, 304, 369
MlyI GAGTC 2 cut(s) 31, 277
MnlI CCTC 5 cut(s) 37, 43, 136, 420, 434
MseI TTAA 1 cut(s) 447
MslI CAYNNNNRTG 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 79
NdeII GATC 5 cut(s) 57, 73, 287, 333, 403
NlaIII CATG 3 cut(s) 110, 158, 296
NmuCI GTSAC 3 cut(s) 161, 322, 436
NspI RCATGY 1 cut(s) 296
PciI ACATGT 1 cut(s) 292
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 2 cut(s) 31, 276
PpsI GAGTC 2 cut(s) 31, 276
PscI ACATGT 1 cut(s) 292
PstNI CAGNNNCTG 1 cut(s) 128
PvuII CAGCTG 1 cut(s) 79
RsaI GTAC 3 cut(s) 22, 83, 153
RsaNI GTAC 3 cut(s) 21, 82, 152
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 1 cut(s) 447
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 5 cut(s) 57, 73, 287, 333, 403
SchI GAGTC 2 cut(s) 31, 277
SfaNI GCATC 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 3 cut(s) 86, 304, 369
SsiI CCGC 3 cut(s) 239, 407, 434
TaaI ACNGT 2 cut(s) 151, 442
TaiI ACGT 1 cut(s) 114
TaqI TCGA 1 cut(s) 219
TasI AATT 3 cut(s) 86, 304, 369
TatI WGTACW 1 cut(s) 81
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TscAI CASTG 1 cut(s) 445
TseFI GTSAC 3 cut(s) 161, 322, 436
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 3 cut(s) 161, 322, 436
TspDTI ATGAA 4 cut(s) 79, 171, 264, 399
TspRI CASTG 1 cut(s) 445
XapI RAATTY 1 cut(s) 86
XceI RCATGY 1 cut(s) 296
ZraI GACGTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.