FvH4_4g32731

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000504
Physical Location & Seq
Forward (+)
31279591 .. 31280170
580 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g32731.t1

Sequence Viewer

Length: 357 bp
ATGGCTTTGAGTAGCAATACTACTACTGGCAACTTAGAGACTGGAGGCCGTGTACATGAAGGTGACTGGGAAACTTCTGGCTCCATCAAGCTCTGGAAATACACCATAGAGAAGGTGGAGATAGATGATGCAAACAAGAAGGTGAGTCTCACAGCATTGGATGGACATGTCCTCGAGAAGTACAAAAGCTACAAGATCATCTTTCAGGTCATTCCAAAGAGTAACCAAGGAGCTAATGTGGCCAAAATTACTCTGGAATATGAGAAGCATAATGAGAGTGACCAGCTTCCCAATAACTACTTCAACGTTGTGGTAAATATCATCAAGGATATTGATGCACATCTTATCGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

119

Amino Acids

13.21

Weight (kDa)

5.76

Isoelectric Point (pI)

19.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 17 - 117 3.5e-31 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 306
AcoI YGGCCR 1 cut(s) 240
AfaI GTAC 2 cut(s) 54, 182
AflIII ACRYGT 1 cut(s) 166
AgsI TTSAA 1 cut(s) 304
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AluBI AGCT 4 cut(s) 91, 189, 233, 286
AluI AGCT 4 cut(s) 91, 189, 233, 286
Alw26I GTCTC 2 cut(s) 32, 152
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 2 cut(s) 46, 240
AsuHPI GGTGA 2 cut(s) 74, 154
AvaI CYCGRG 1 cut(s) 173
BalI TGGCCA 1 cut(s) 242
BccI CCATC 2 cut(s) 92, 155
BceAI ACGGC 1 cut(s) 33
BcoDI GTCTC 2 cut(s) 32, 152
BmeT110I CYCGRG 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 82
BmrI ACTGGG 1 cut(s) 76
BmsI GCATC 2 cut(s) 118, 325
BmuI ACTGGG 1 cut(s) 76
BpmI CTGGAG 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 226
BsaXI ACNNNNNCTCC 4 cut(s) 36, 66, 222, 252
Bse1I ACTGG 3 cut(s) 31, 46, 71
Bse8I GATNNNNATC 1 cut(s) 339
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 1 cut(s) 166
BseJI GATNNNNATC 1 cut(s) 339
BseNI ACTGG 3 cut(s) 31, 46, 71
BshFI GGCC 2 cut(s) 48, 242
BsiHKCI CYCGRG 1 cut(s) 173
BsmAI GTCTC 2 cut(s) 32, 152
BsnI GGCC 2 cut(s) 48, 242
BsoBI CYCGRG 1 cut(s) 173
Bsp1407I TGTACA 1 cut(s) 52
Bsp143I GATC 1 cut(s) 195
BspANI GGCC 2 cut(s) 48, 242
BspLI GGNNCC 1 cut(s) 82
BsrGI TGTACA 1 cut(s) 52
BsrI ACTGG 3 cut(s) 31, 46, 71
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 226
BstAUI TGTACA 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 34
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 1 cut(s) 198
BstMAI GTCTC 2 cut(s) 32, 152
BstMBI GATC 1 cut(s) 195
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 170
BsuRI GGCC 2 cut(s) 48, 242
BtsCI GGATG 1 cut(s) 166
Csp6I GTAC 2 cut(s) 53, 181
CviAII CATG 2 cut(s) 56, 167
CviJI RGCY 8 cut(s) 5, 48, 81, 91, 189, 233, 242, 286
CviKI_1 RGCY 8 cut(s) 5, 48, 81, 91, 189, 233, 242, 286
CviQI GTAC 2 cut(s) 53, 181
DdeI CTNAG 1 cut(s) 34
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
EaeI YGGCCR 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 226
Eco88I CYCGRG 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 2 cut(s) 59, 170
FaiI YATR 5 cut(s) 57, 107, 168, 261, 270
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FatI CATG 2 cut(s) 55, 166
FokI GGATG 1 cut(s) 173
GsuI CTGGAG 1 cut(s) 63
HaeIII GGCC 2 cut(s) 48, 242
Hin1II CATG 2 cut(s) 59, 170
HinfI GANTC 1 cut(s) 145
HphI GGTGA 2 cut(s) 74, 154
Hpy166II GTNNAC 1 cut(s) 53
Hpy188III TCNNGA 4 cut(s) 94, 175, 254, 354
Hpy8I GTNNAC 1 cut(s) 53
HpyAV CCTTC 3 cut(s) 53, 106, 133
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 2 cut(s) 131, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 34
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 2 cut(s) 59, 170
Kzo9I GATC 1 cut(s) 195
LmnI GCTCC 2 cut(s) 86, 230
LpnPI CCDG 8 cut(s) 12, 27, 52, 63, 79, 191, 239, 296
LweI GCATC 2 cut(s) 118, 325
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 3 cut(s) 62, 221, 278
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MlsI TGGCCA 1 cut(s) 242
MluCI AATT 1 cut(s) 246
MluNI TGGCCA 1 cut(s) 242
MlyI GAGTC 1 cut(s) 154
MnlI CCTC 2 cut(s) 38, 182
Mox20I TGGCCA 1 cut(s) 242
MscI TGGCCA 1 cut(s) 242
MslI CAYNNNNRTG 1 cut(s) 60
Msp20I TGGCCA 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 1 cut(s) 195
NlaIII CATG 2 cut(s) 59, 170
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 2 cut(s) 62, 278
NspI RCATGY 1 cut(s) 170
PaeR7I CTCGAG 1 cut(s) 173
PciI ACATGT 1 cut(s) 166
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
PscI ACATGT 1 cut(s) 166
Psp1406I AACGTT 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 82
RsaI GTAC 2 cut(s) 54, 182
RsaNI GTAC 2 cut(s) 53, 181
RseI CAYNNNNRTG 1 cut(s) 60
Sau3AI GATC 1 cut(s) 195
SchI GAGTC 1 cut(s) 154
SetI ASST 9 cut(s) 64, 93, 117, 144, 191, 210, 235, 288, 309
SfaNI GCATC 2 cut(s) 118, 325
Sfr274I CTCGAG 1 cut(s) 173
SlaI CTCGAG 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 1 cut(s) 246
StyI CCWWGG 1 cut(s) 226
TaiI ACGT 1 cut(s) 309
TaqI TCGA 1 cut(s) 174
TasI AATT 1 cut(s) 246
TatI WGTACW 2 cut(s) 52, 180
TseFI GTSAC 2 cut(s) 62, 278
Tsp45I GTSAC 2 cut(s) 62, 278
TspDTI ATGAA 1 cut(s) 72
XceI RCATGY 1 cut(s) 170
XcmI CCANNNNNNNNNTGG 2 cut(s) 112, 250
XhoI CTCGAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.