Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000504

Physical Location & Seq

Genomic Coordinates Forward (+)

8107254 .. 8108379

Gene Structure 1126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G14060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCTACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCAGCGGAGAAACACTACAAGCGGTGGAGGAATGAGAACCACCTTTTCCCCGACGCCATCGGCCACCACATCCAAGGTGTCACCGTCCACGACGGCGAATGGGACTCCCATGGAGCCCTCAAGATTTGGAACTACACATTAGATGGGAAACCGGAGATGTTCAAGGAGAGGAGAGAGATAGACGATGAAAACATGGCGGTAACGTTCGTTGGACTAGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATGATACCATTTTACAGTTCATTCAAAAGTCCCCGGATGATATCGTTTGCAAGATCACTATGACCTGGGAGAAGCGAGCCGATGACTCGCCTGAACCCAGCAACTACATGAAGTTGGTCAAGAGTCTCGCTGCTGACATGGACGCCCACGTTCTCAAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010228 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0080184

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

151

Amino Acids

17.32

Weight (kDa)

5.56

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	2 - 150	7.5e-68	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca	FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica	MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica	Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis	pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis	RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata	RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora	Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii	Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa	Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha	Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana	Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	264
AciI	CCGC	3 cut(s)	50, 67, 242
AclI	AACGTT	1 cut(s)	248
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	106
AcvI	CACGTG	1 cut(s)	271
AcyI	GRCGYC	2 cut(s)	99, 435
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	3 cut(s)	40, 208, 317
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	2 cut(s)	280, 422
AsuC2I	CCSGG	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	163
BbrPI	CACGTG	1 cut(s)	271
BbvI	GCAGC	2 cut(s)	292, 409
BccI	CCATC	3 cut(s)	110, 182, 268
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	1 cut(s)	260
BisI	GCNGC	2 cut(s)	281, 423
BlsI	GCNGC	2 cut(s)	282, 424
Bme1390I	CCNGG	2 cut(s)	326, 358
BmiI	GGNNCC	2 cut(s)	33, 160
BmrFI	CCNGG	2 cut(s)	326, 358
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	326
BsaAI	YACGTR	1 cut(s)	271
BsaHI	GRCGYC	2 cut(s)	99, 435
BsaJI	CCNNGG	4 cut(s)	118, 154, 324, 357
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	358
BseDI	CCNNGG	4 cut(s)	118, 154, 324, 357
BseGI	GGATG	2 cut(s)	114, 334
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	229
BseXI	GCAGC	2 cut(s)	292, 409
BseYI	CCCAGC	1 cut(s)	389
BshFI	GGCC	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	197, 326
BslFI	GGGAC	2 cut(s)	161, 307
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	422
BsmFI	GGGAC	2 cut(s)	161, 307
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	2 cut(s)	44, 345
Bsp19I	CCATGG	1 cut(s)	154
BspACI	CCGC	3 cut(s)	50, 67, 242
BspANI	GGCC	1 cut(s)	108
BspLI	GGNNCC	2 cut(s)	33, 160
BspPI	GGATC	1 cut(s)	52
BssECI	CCNNGG	4 cut(s)	118, 154, 324, 357
BssMI	GATC	2 cut(s)	44, 345
BssNI	GRCGYC	2 cut(s)	99, 435
BssT1I	CCWWGG	2 cut(s)	118, 154
Bst2UI	CCWGG	1 cut(s)	358
Bst4CI	ACNGT	2 cut(s)	130, 309
BstACI	GRCGYC	2 cut(s)	99, 435
BstBAI	YACGTR	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	369
BstDSI	CCRYGG	1 cut(s)	154
BstENI	CCTNNNNNAGG	1 cut(s)	39
BstF5I	GGATG	2 cut(s)	114, 334
BstKTI	GATC	2 cut(s)	47, 348
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	2 cut(s)	44, 345
BstNI	CCWGG	1 cut(s)	358
BstSCI	CCNGG	2 cut(s)	324, 356
BstV1I	GCAGC	2 cut(s)	292, 409
BsuRI	GGCC	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	154
BtsCI	GGATG	2 cut(s)	114, 334
Cac8I	GCNNGC	1 cut(s)	369
CseI	GACGC	2 cut(s)	107, 443
CviAII	CATG	4 cut(s)	155, 238, 400, 430
CviJI	RGCY	6 cut(s)	5, 108, 161, 283, 371, 452
CviKI_1	RGCY	6 cut(s)	5, 108, 161, 283, 371, 452
DpnI	GATC	2 cut(s)	46, 347
DpnII	GATC	2 cut(s)	44, 345
DrdI	GACNNNNNNGTC	1 cut(s)	264
DseDI	GACNNNNNNGTC	1 cut(s)	264
EaeI	YGGCCR	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	118, 154
Eco24I	GRGCYC	1 cut(s)	163
Eco32I	GATATC	1 cut(s)	334
Eco72I	CACGTG	1 cut(s)	271
EcoNI	CCTNNNNNAGG	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	356
EcoRV	GATATC	1 cut(s)	334
EcoT14I	CCWWGG	2 cut(s)	118, 154
EcoT38I	GRGCYC	1 cut(s)	163
ErhI	CCWWGG	2 cut(s)	118, 154
FaeI	CATG	4 cut(s)	158, 241, 403, 433
FaiI	YATR	8 cut(s)	19, 21, 156, 239, 294, 353, 401, 431
FaqI	GGGAC	2 cut(s)	161, 307
FatI	CATG	4 cut(s)	154, 237, 399, 429
FauNDI	CATATG	1 cut(s)	19
Fnu4HI	GCNGC	2 cut(s)	281, 423
FokI	GGATG	2 cut(s)	101, 341
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	2 cut(s)	281, 423
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	2 cut(s)	281, 423
GsaI	CCCAGC	1 cut(s)	393
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	2 cut(s)	197, 326
HgaI	GACGC	2 cut(s)	107, 443
Hin1I	GRCGYC	2 cut(s)	99, 435
Hin1II	CATG	4 cut(s)	158, 241, 403, 433
HinfI	GANTC	3 cut(s)	149, 377, 415
HpaII	CCGG	2 cut(s)	197, 326
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188III	TCNNGA	3 cut(s)	12, 166, 412
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	2 cut(s)	101, 140
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	2 cut(s)	130, 309
HpyCH4IV	ACGT	4 cut(s)	8, 248, 270, 441
HpyCH4V	TGCA	1 cut(s)	342
HpySE526I	ACGT	4 cut(s)	8, 248, 270, 441
Hsp92I	GRCGYC	2 cut(s)	99, 435
Hsp92II	CATG	4 cut(s)	158, 241, 403, 433
Kzo9I	GATC	2 cut(s)	44, 345
LmnI	GCTCC	2 cut(s)	158, 277
LpnPI	CCDG	6 cut(s)	210, 339, 343, 370, 396, 403
Lsp1109I	GCAGC	2 cut(s)	292, 409
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	4 cut(s)	8, 248, 270, 441
MaeIII	GTNAC	4 cut(s)	22, 124, 244, 266
MalI	GATC	2 cut(s)	46, 347
MboI	GATC	2 cut(s)	44, 345
MhlI	GDGCHC	1 cut(s)	163
MlyI	GAGTC	3 cut(s)	143, 371, 424
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	4 cut(s)	22, 66, 173, 207
MseI	TTAA	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	2 cut(s)	197, 326
MspR9I	CCNGG	2 cut(s)	326, 358
MvaI	CCWGG	1 cut(s)	358
NciI	CCSGG	1 cut(s)	326
NcoI	CCATGG	1 cut(s)	154
NdeI	CATATG	1 cut(s)	19
NdeII	GATC	2 cut(s)	44, 345
NlaIII	CATG	4 cut(s)	158, 241, 403, 433
NlaIV	GGNNCC	2 cut(s)	33, 160
NmuCI	GTSAC	3 cut(s)	22, 124, 266
PkrI	GCNGC	2 cut(s)	282, 424
PleI	GAGTC	3 cut(s)	143, 371, 423
PmaCI	CACGTG	1 cut(s)	271
PmlI	CACGTG	1 cut(s)	271
PpsI	GAGTC	3 cut(s)	143, 371, 423
Ppu21I	YACGTR	1 cut(s)	271
Psp1406I	AACGTT	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	356
PspCI	CACGTG	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	2 cut(s)	33, 160
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	2 cut(s)	281, 423
Sau3AI	GATC	2 cut(s)	44, 345
SchI	GAGTC	3 cut(s)	143, 371, 424
ScrFI	CCNGG	2 cut(s)	326, 358
SduI	GDGCHC	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SsiI	CCGC	3 cut(s)	50, 67, 242
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	324, 356
StyI	CCWWGG	2 cut(s)	118, 154
TaaI	ACNGT	2 cut(s)	130, 309
TaiI	ACGT	4 cut(s)	11, 251, 273, 444
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TseFI	GTSAC	3 cut(s)	22, 124, 266
TseI	GCWGC	2 cut(s)	280, 422
Tsp45I	GTSAC	3 cut(s)	22, 124, 266
TspDTI	ATGAA	3 cut(s)	246, 301, 416
TspGWI	ACGGA	1 cut(s)	41
XagI	CCTNNNNNAGG	1 cut(s)	39
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.