Rroxscaffold_5G00382510

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000504
Physical Location & Seq
Forward (+)
62364830 .. 62365624
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00382510.1

Sequence Viewer

Length: 336 bp
ATGGCTTTGAGTAGCAGCACTACTGGCAACCTGGAGACTCTGGAGGAGGTGGTAGAGATCAAATCCTCAGCTGATAAATTGTACACGATCATAACCACCGAGCACCATAATGTTCCCAAAGCCTCCTCAGATCATATACACGACGTTGCAGTACATGAAGGTGACTGGGAAGCTTCTGGTTCAATAAAGCTCTGGAAATATACCGTAGATGGAACTGTTGAGACACTCAATGATAAGGTGGAGATAGATGAAGCAAACAAGAGGGTGAGTTTCACAGCATTGGAGGGACATGTGCTAAGATCAAATATGGACATAACACATATCATCATAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

111

Amino Acids

12.31

Weight (kDa)

5.08

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 12 - 101 5.8e-30 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 83, 153
AflIII ACRYGT 1 cut(s) 289
AgsI TTSAA 1 cut(s) 183
AjnI CCWGG 1 cut(s) 30
AluBI AGCT 3 cut(s) 71, 173, 190
AluI AGCT 3 cut(s) 71, 173, 190
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 2 cut(s) 29, 215
ApeKI GCWGC 1 cut(s) 15
AsuHPI GGTGA 2 cut(s) 173, 277
Bbv12I GWGCWC 1 cut(s) 105
BbvCI CCTCAGC 1 cut(s) 67
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 32
BcoDI GTCTC 2 cut(s) 29, 215
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 32
BmrI ACTGGG 1 cut(s) 175
BmuI ACTGGG 1 cut(s) 175
BpmI CTGGAG 2 cut(s) 53, 62
Bpu10I CCTNAGC 1 cut(s) 67
Bse1I ACTGG 2 cut(s) 28, 170
BseBI CCWGG 1 cut(s) 32
BseMII CTCAG 2 cut(s) 81, 141
BseNI ACTGG 2 cut(s) 28, 170
BseRI GAGGAG 2 cut(s) 59, 115
BseXI GCAGC 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 105
BslFI GGGAC 1 cut(s) 300
BsmAI GTCTC 2 cut(s) 29, 215
BsmFI GGGAC 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 105
Bsp1407I TGTACA 1 cut(s) 81
Bsp143I GATC 4 cut(s) 57, 87, 130, 299
BspCNI CTCAG 2 cut(s) 80, 140
BsrGI TGTACA 1 cut(s) 81
BsrI ACTGG 2 cut(s) 28, 170
BssMI GATC 4 cut(s) 57, 87, 130, 299
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 2 cut(s) 205, 217
BstAUI TGTACA 1 cut(s) 81
BstDEI CTNAG 3 cut(s) 67, 127, 296
BstKTI GATC 4 cut(s) 60, 90, 133, 302
BstMAI GTCTC 2 cut(s) 29, 215
BstMBI GATC 4 cut(s) 57, 87, 130, 299
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNI CCWGG 1 cut(s) 32
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 27
Csp6I GTAC 2 cut(s) 82, 152
CviAII CATG 2 cut(s) 155, 290
CviJI RGCY 5 cut(s) 5, 71, 122, 173, 190
CviKI_1 RGCY 5 cut(s) 5, 71, 122, 173, 190
CviQI GTAC 2 cut(s) 82, 152
DdeI CTNAG 3 cut(s) 67, 127, 296
DpnI GATC 4 cut(s) 59, 89, 132, 301
DpnII GATC 4 cut(s) 57, 87, 130, 299
EcoRII CCWGG 1 cut(s) 30
FaeI CATG 2 cut(s) 158, 293
FaqI GGGAC 1 cut(s) 300
FatI CATG 2 cut(s) 154, 289
Fnu4HI GCNGC 1 cut(s) 16
Fsp4HI GCNGC 1 cut(s) 16
GluI GCNGC 1 cut(s) 16
GsuI CTGGAG 2 cut(s) 53, 62
Hin1II CATG 2 cut(s) 158, 293
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 1 cut(s) 37
HphI GGTGA 2 cut(s) 173, 277
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 2 cut(s) 41, 193
Hpy8I GTNNAC 1 cut(s) 84
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 2 cut(s) 205, 217
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpyF3I CTNAG 3 cut(s) 67, 127, 296
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 2 cut(s) 158, 293
Kzo9I GATC 4 cut(s) 57, 87, 130, 299
LpnPI CCDG 7 cut(s) 9, 17, 26, 44, 151, 162, 178
Lsp1109I GCAGC 1 cut(s) 27
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 161
MalI GATC 4 cut(s) 59, 89, 132, 301
MboI GATC 4 cut(s) 57, 87, 130, 299
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 1 cut(s) 77
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 7 cut(s) 37, 40, 76, 133, 136, 255, 277
MslI CAYNNNNRTG 2 cut(s) 108, 159
MspA1I CMGCKG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 32
MvaI CCWGG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 24
NdeII GATC 4 cut(s) 57, 87, 130, 299
NlaIII CATG 2 cut(s) 158, 293
NmuCI GTSAC 1 cut(s) 161
NspI RCATGY 1 cut(s) 293
PciI ACATGT 1 cut(s) 289
PkrI GCNGC 1 cut(s) 17
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PscI ACATGT 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 2 cut(s) 83, 153
RsaNI GTAC 2 cut(s) 82, 152
RseI CAYNNNNRTG 2 cut(s) 108, 159
SatI GCNGC 1 cut(s) 16
Sau3AI GATC 4 cut(s) 57, 87, 130, 299
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 1 cut(s) 32
SduI GDGCHC 1 cut(s) 105
SetI ASST 8 cut(s) 33, 51, 73, 147, 163, 175, 192, 240
SmiMI CAYNNNNRTG 2 cut(s) 108, 159
Sse9I AATT 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 30
TaaI ACNGT 2 cut(s) 205, 217
TaiI ACGT 1 cut(s) 147
TasI AATT 1 cut(s) 77
TatI WGTACW 2 cut(s) 81, 151
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 1 cut(s) 15
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 2 cut(s) 171, 264
XceI RCATGY 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.