Prupe.1G328200_v2.0.a1

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000504
Physical Location & Seq
Forward (+)
31196956 .. 31198153
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G328200.1

Sequence Viewer

Length: 486 bp
ATGGCTTTGAGTGGAGGTGGTAATAATAATAGTTACAAGCTGGAGACTGTGGAGGCTGAGGTAGAGATCAAATCCAACGCTGACAAATTGTACAAGGTCTTCAGCAACCAGCACCACGCCTTTCCCAAGGCCTCCTCTGATCATGTACACGATGTTGTAGTTCATGAAGGTGACTGGGAAACTTCTGGTTCCATCAAGCTTTGGACATACACCGCAGATGGAAATGTTGAGATCTTCAAGGAAAAGGTGGAAATAGATGAAGCAAACAAGTGGGTCAGTTTTACCGCTTTGGAGGGACATGTGCTGGAGCAATACAGAAGCTATAAGATCATTTTTCAGGTCACTCCAAAAAGTGGAGGAGGAGGTCTGGTGAAAATTACTATACATTATGGAAAACTTAATGACAACGATCCACCTCCACATAAGTATCTTCGCTTTGCGATCAATGTTGTTCATGATATGGATGCCCATCTTCTTAAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

162

Amino Acids

18.12

Weight (kDa)

5.9

Isoelectric Point (pI)

19.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 353
AciI CCGC 2 cut(s) 213, 285
AclWI GGATC 1 cut(s) 404
AcuI CTGAAG 1 cut(s) 85
AfaI GTAC 2 cut(s) 92, 147
AfiI CCNNNNNNNGG 1 cut(s) 353
AflIII ACRYGT 1 cut(s) 298
AgsI TTSAA 1 cut(s) 238
AluBI AGCT 3 cut(s) 40, 199, 321
AluI AGCT 3 cut(s) 40, 199, 321
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 1 cut(s) 404
AoxI GGCC 1 cut(s) 129
AsuHPI GGTGA 2 cut(s) 182, 382
BaeI ACNNNNGTAYC 2 cut(s) 410, 443
BarI GAAGNNNNNNTAC 2 cut(s) 83, 115
BbsI GAAGAC 1 cut(s) 91
BbvCI CCTCAGC 1 cut(s) 57
BccI CCATC 3 cut(s) 200, 212, 477
BclI TGATCA 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 38
BglII AGATCT 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 190
BmrI ACTGGG 1 cut(s) 184
BmsI GCATC 1 cut(s) 454
BmuI ACTGGG 1 cut(s) 184
BpiI GAAGAC 1 cut(s) 91
BpmI CTGGAG 2 cut(s) 62, 326
Bpu10I CCTNAGC 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 126
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 179
Bse8I GATNNNNATC 1 cut(s) 468
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 469
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 179
BseRI GAGGAG 3 cut(s) 124, 372, 375
BshFI GGCC 1 cut(s) 131
BslFI GGGAC 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 309
BsnI GGCC 1 cut(s) 131
Bsp1407I TGTACA 2 cut(s) 90, 145
Bsp143I GATC 6 cut(s) 66, 139, 231, 327, 409, 441
BspACI CCGC 2 cut(s) 213, 285
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 1 cut(s) 49
BspHI TCATGA 2 cut(s) 163, 454
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 1 cut(s) 404
BsrGI TGTACA 2 cut(s) 90, 145
BsrI ACTGG 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 6 cut(s) 66, 139, 231, 327, 409, 441
BssT1I CCWWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 49
BstAUI TGTACA 2 cut(s) 90, 145
BstDEI CTNAG 1 cut(s) 57
BstF5I GGATG 1 cut(s) 469
BstKTI GATC 6 cut(s) 69, 142, 234, 330, 412, 444
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 6 cut(s) 66, 139, 231, 327, 409, 441
BstNSI RCATGY 1 cut(s) 302
BstV2I GAAGAC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 1 cut(s) 469
CciI TCATGA 2 cut(s) 163, 454
Csp6I GTAC 2 cut(s) 91, 146
CviAII CATG 4 cut(s) 143, 164, 299, 455
CviJI RGCY 6 cut(s) 5, 40, 56, 131, 199, 321
CviKI_1 RGCY 6 cut(s) 5, 40, 56, 131, 199, 321
CviQI GTAC 2 cut(s) 91, 146
DdeI CTNAG 1 cut(s) 57
DpnI GATC 6 cut(s) 68, 141, 233, 329, 411, 443
DpnII GATC 6 cut(s) 66, 139, 231, 327, 409, 441
Eco130I CCWWGG 1 cut(s) 126
Eco147I AGGCCT 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 4 cut(s) 146, 167, 302, 458
FaqI GGGAC 1 cut(s) 309
FatI CATG 4 cut(s) 142, 163, 298, 454
FbaI TGATCA 1 cut(s) 139
FokI GGATG 1 cut(s) 476
GsuI CTGGAG 2 cut(s) 62, 326
HaeIII GGCC 1 cut(s) 131
Hin1II CATG 4 cut(s) 146, 167, 302, 458
HindIII AAGCTT 1 cut(s) 197
HphI GGTGA 2 cut(s) 182, 382
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 2 cut(s) 164, 455
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 1 cut(s) 49
HpyF3I CTNAG 1 cut(s) 57
Hsp92II CATG 4 cut(s) 146, 167, 302, 458
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 6 cut(s) 66, 139, 231, 327, 409, 441
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 7 cut(s) 26, 122, 160, 171, 290, 323, 353
LweI GCATC 1 cut(s) 454
MaeIII GTNAC 3 cut(s) 32, 170, 340
MalI GATC 6 cut(s) 68, 141, 233, 329, 411, 443
MboI GATC 6 cut(s) 66, 139, 231, 327, 409, 441
MboII GAAGA 4 cut(s) 91, 226, 422, 464
MflI RGATCY 1 cut(s) 231
MluCI AATT 2 cut(s) 86, 375
MmeI TCCRAC 1 cut(s) 99
MseI TTAA 2 cut(s) 399, 477
MslI CAYNNNNRTG 1 cut(s) 168
NdeII GATC 6 cut(s) 66, 139, 231, 327, 409, 441
NlaIII CATG 4 cut(s) 146, 167, 302, 458
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 2 cut(s) 170, 340
NspI RCATGY 1 cut(s) 302
PagI TCATGA 2 cut(s) 163, 454
PceI AGGCCT 1 cut(s) 131
PciI ACATGT 1 cut(s) 298
PflMI CCANNNNNTGG 1 cut(s) 353
PscI ACATGT 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 190
PsuI RGATCY 1 cut(s) 231
RsaI GTAC 2 cut(s) 92, 147
RsaNI GTAC 2 cut(s) 91, 146
RseI CAYNNNNRTG 1 cut(s) 168
SaqAI TTAA 2 cut(s) 399, 477
Sau3AI GATC 6 cut(s) 66, 139, 231, 327, 409, 441
SfaNI GCATC 1 cut(s) 454
SmiMI CAYNNNNRTG 1 cut(s) 168
Sse9I AATT 2 cut(s) 86, 375
SseBI AGGCCT 1 cut(s) 131
SsiI CCGC 2 cut(s) 213, 285
StuI AGGCCT 1 cut(s) 131
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 49
TasI AATT 2 cut(s) 86, 375
TatI WGTACW 2 cut(s) 90, 145
Tru1I TTAA 2 cut(s) 399, 477
Tru9I TTAA 2 cut(s) 399, 477
TseFI GTSAC 2 cut(s) 170, 340
Tsp45I GTSAC 2 cut(s) 170, 340
TspDTI ATGAA 4 cut(s) 152, 180, 273, 443
Van91I CCANNNNNTGG 1 cut(s) 353
XceI RCATGY 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.