Rmu_sc0000353.1_g000008

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000353.1
OG0000504
Physical Location & Seq
Reverse (-)
37198 .. 37731
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000353.1_g000008.1.cds

Sequence Viewer

Length: 435 bp
atggctttgagtagcagtactaccgggaatctggagactctggaggcagttgtagagatcaaatcctcagccgataaattgtacgcgatcataagcaacgagcaccacaatgtccccaatgccacatctgataatgtacacgacgttgcagtacatgaaggtgactggaaaacttctggttccatcaagttctggaaatataccattgcaaataagaggatgagtctcacagcattggaggcacatgttctggagcaatacagaagctataagattatctttcaggtcactccaaagagtgatgaaggaggtaatcaggtcaaaattactctggaatatgaaaagctcaatgagagtgaccagcctccgcataagtacctccactttctagtcaatgtcattaaggatattgatgaacatcttattgcttcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

144

Amino Acids

16.24

Weight (kDa)

5.7

Isoelectric Point (pI)

24.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 86
AciI CCGC 1 cut(s) 368
AfaI GTAC 5 cut(s) 19, 83, 138, 153, 377
AflIII ACRYGT 1 cut(s) 244
AluBI AGCT 2 cut(s) 267, 346
AluI AGCT 2 cut(s) 267, 346
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 2 cut(s) 29, 230
AsuC2I CCSGG 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 105
BbvCI CCTCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 191
BcnI CCSGG 1 cut(s) 25
BcoDI GTCTC 2 cut(s) 29, 230
BfaI CTAG 1 cut(s) 389
BmcAI AGTACT 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 25
BpmI CTGGAG 3 cut(s) 53, 62, 272
Bpu10I CCTNAGC 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 25
BsaBI GATNNNNATC 1 cut(s) 417
Bse1I ACTGG 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 417
BseGI GGATG 1 cut(s) 225
BseJI GATNNNNATC 1 cut(s) 417
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 1 cut(s) 24
BslFI GGGAC 1 cut(s) 98
BsmAI GTCTC 2 cut(s) 29, 230
BsmFI GGGAC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 105
Bsp1407I TGTACA 1 cut(s) 136
Bsp143I GATC 2 cut(s) 57, 87
BspACI CCGC 1 cut(s) 368
BspCNI CTCAG 1 cut(s) 80
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 204
BsrGI TGTACA 1 cut(s) 136
BsrI ACTGG 1 cut(s) 170
BssMI GATC 2 cut(s) 57, 87
BstAUI TGTACA 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 67
BstF5I GGATG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 86
BstKTI GATC 2 cut(s) 60, 90
BstMAI GTCTC 2 cut(s) 29, 230
BstMBI GATC 2 cut(s) 57, 87
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 23
BstUI CGCG 1 cut(s) 86
BtsCI GGATG 1 cut(s) 225
Csp6I GTAC 5 cut(s) 18, 82, 137, 152, 376
CviAII CATG 2 cut(s) 155, 245
CviJI RGCY 5 cut(s) 5, 71, 267, 346, 364
CviKI_1 RGCY 5 cut(s) 5, 71, 267, 346, 364
CviQI GTAC 5 cut(s) 18, 82, 137, 152, 376
DdeI CTNAG 1 cut(s) 67
DpnI GATC 2 cut(s) 59, 89
DpnII GATC 2 cut(s) 57, 87
FaeI CATG 2 cut(s) 158, 248
FaiI YATR 7 cut(s) 92, 156, 201, 246, 270, 339, 372
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 1 cut(s) 98
FatI CATG 2 cut(s) 154, 244
FokI GGATG 1 cut(s) 232
FspBI CTAG 1 cut(s) 389
GsuI CTGGAG 3 cut(s) 53, 62, 272
HapII CCGG 1 cut(s) 24
Hin1II CATG 2 cut(s) 158, 248
HinfI GANTC 3 cut(s) 28, 37, 223
HpaII CCGG 1 cut(s) 24
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 5 cut(s) 32, 41, 193, 251, 332
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 2 cut(s) 152, 299
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 2 cut(s) 149, 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 67
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 2 cut(s) 158, 248
Kzo9I GATC 2 cut(s) 57, 87
LmnI GCTCC 1 cut(s) 253
MaeI CTAG 1 cut(s) 389
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 3 cut(s) 161, 286, 356
MalI GATC 2 cut(s) 59, 89
MboI GATC 2 cut(s) 57, 87
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 2 cut(s) 77, 324
MlyI GAGTC 2 cut(s) 31, 232
MnlI CCTC 7 cut(s) 37, 76, 210, 232, 302, 375, 389
MseI TTAA 2 cut(s) 402, 433
MslI CAYNNNNRTG 2 cut(s) 108, 159
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 25
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 239
NciI CCSGG 1 cut(s) 25
NdeII GATC 2 cut(s) 57, 87
NlaIII CATG 2 cut(s) 158, 248
NlaIV GGNNCC 1 cut(s) 181
NmuCI GTSAC 3 cut(s) 161, 286, 356
NspI RCATGY 1 cut(s) 248
PciI ACATGT 1 cut(s) 244
PfeI GAWTC 1 cut(s) 28
PleI GAGTC 2 cut(s) 31, 231
PpsI GAGTC 2 cut(s) 31, 231
PscI ACATGT 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 181
RsaI GTAC 5 cut(s) 19, 83, 138, 153, 377
RsaNI GTAC 5 cut(s) 18, 82, 137, 152, 376
RseI CAYNNNNRTG 2 cut(s) 108, 159
SaqAI TTAA 2 cut(s) 402, 433
Sau3AI GATC 2 cut(s) 57, 87
ScaI AGTACT 1 cut(s) 19
SchI GAGTC 2 cut(s) 31, 232
ScrFI CCNGG 1 cut(s) 25
SduI GDGCHC 1 cut(s) 105
SetI ASST 8 cut(s) 147, 163, 269, 288, 313, 321, 348, 381
SmiMI CAYNNNNRTG 2 cut(s) 108, 159
Sse9I AATT 2 cut(s) 77, 324
SsiI CCGC 1 cut(s) 368
SspMI CTAG 1 cut(s) 389
StyD4I CCNGG 1 cut(s) 23
TaiI ACGT 1 cut(s) 147
TasI AATT 2 cut(s) 77, 324
TatI WGTACW 3 cut(s) 17, 136, 151
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 2 cut(s) 402, 433
Tru9I TTAA 2 cut(s) 402, 433
TseFI GTSAC 3 cut(s) 161, 286, 356
Tsp45I GTSAC 3 cut(s) 161, 286, 356
TspDTI ATGAA 4 cut(s) 171, 318, 354, 429
XceI RCATGY 1 cut(s) 248
XspI CTAG 1 cut(s) 389
ZrmI AGTACT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.