AT3G26450

mlp-like protein 328

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000504
Physical Location & Seq
Reverse (-)
9681235 .. 9683506
2272 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26450.1

Sequence Viewer

Length: 459 bp
ATGGCGACGTCGGGAACATACGTGACGCAGGTGCCGTTAAAAGGAACGGTGGAGAAACACTTCAAGAGGTACAGGAACGAGAACTATCTCTTCCCTGACACTATCGGCCACCACATCCAAAGTGTTACTGTTCACGATGGCGAATGGGACACTCAAGGAGGCATCAAGATTTGGAACTACACACTCGGAGATGGAAAGGAGGAGGTATTCAAGGAGAGGAGAGAGATAGACGATGACAATAAGATAGTGAAGGTTGTAGGATTGGAAGGTCACGTGATGGAGCAGTTCAAGGTGTATGAGATTGACTTCCAATTTATTCCCAACTCTGAAGAAGATTGCGTCTGCAAAATCACTATGATATGGGAGAAGCGCAACGATGATTTCCCCGAACCAAGCAGCTACATGCAACTCCTCAAGAGTATGGTTATTGATATGGAGGACCACGTCCTTAAAGCTTAA

Protein Analysis

152

Amino Acids

17.79

Weight (kDa)

5.01

Isoelectric Point (pI)

27.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 2 - 151 7.8e-60 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 19
AatII GACGTC 1 cut(s) 11
Acc36I ACCTGC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 31
AcoI YGGCCR 1 cut(s) 106
AcuI CTGAAG 1 cut(s) 348
AcvI CACGTG 1 cut(s) 274
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 3 cut(s) 64, 211, 289
AjiI CACGTC 1 cut(s) 445
AluBI AGCT 2 cut(s) 399, 455
AluI AGCT 2 cut(s) 399, 455
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 396
Asp700I GAANNNNTTC 1 cut(s) 59
AspLEI GCGC 1 cut(s) 372
AspS9I GGNCC 1 cut(s) 439
AvaII GGWCC 1 cut(s) 439
BanI GGYRCC 1 cut(s) 31
BbrPI CACGTG 1 cut(s) 274
BbvI GCAGC 1 cut(s) 408
BccI CCATC 3 cut(s) 131, 185, 271
BceAI ACGGC 1 cut(s) 19
BfuAI ACCTGC 1 cut(s) 19
BisI GCNGC 1 cut(s) 397
BlsI GCNGC 1 cut(s) 398
Bme18I GGWCC 1 cut(s) 439
BmgBI CACGTC 1 cut(s) 445
BmgT120I GGNCC 1 cut(s) 439
BmiI GGNNCC 1 cut(s) 33
BmsI GCATC 1 cut(s) 171
BpuEI CTTGAG 2 cut(s) 138, 398
BsaAI YACGTR 2 cut(s) 22, 274
BsaHI GRCGYC 1 cut(s) 8
Bsc4I CCNNNNNNNGG 1 cut(s) 41
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 41
BseRI GAGGAG 3 cut(s) 215, 232, 401
BseXI GCAGC 1 cut(s) 408
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 31
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 1 cut(s) 108
BspANI GGCC 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 33
BspMI ACCTGC 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 31
BssNI GRCGYC 1 cut(s) 8
Bst4CI ACNGT 2 cut(s) 49, 130
Bst6I CTCTTC 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 8
BstBAI YACGTR 2 cut(s) 22, 274
BstF5I GGATG 1 cut(s) 114
BstHHI GCGC 1 cut(s) 372
BstNSI RCATGY 1 cut(s) 406
BstV1I GCAGC 1 cut(s) 408
BsuRI GGCC 1 cut(s) 108
BtrI CACGTC 1 cut(s) 445
BtsCI GGATG 1 cut(s) 114
BveI ACCTGC 1 cut(s) 19
CfoI GCGC 1 cut(s) 372
Cfr13I GGNCC 1 cut(s) 439
CseI GACGC 2 cut(s) 34, 328
Csp6I GTAC 1 cut(s) 70
CviAII CATG 1 cut(s) 403
CviJI RGCY 3 cut(s) 108, 399, 455
CviKI_1 RGCY 3 cut(s) 108, 399, 455
CviQI GTAC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 439
Eco57I CTGAAG 1 cut(s) 348
Eco72I CACGTG 1 cut(s) 274
FaeI CATG 1 cut(s) 406
FaiI YATR 7 cut(s) 19, 297, 356, 361, 404, 422, 434
FaqI GGGAC 1 cut(s) 161
FatI CATG 1 cut(s) 402
Fnu4HI GCNGC 1 cut(s) 397
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 1 cut(s) 397
GlaI GCGC 1 cut(s) 371
GluI GCNGC 1 cut(s) 397
HaeIII GGCC 1 cut(s) 108
HgaI GACGC 2 cut(s) 34, 328
HhaI GCGC 1 cut(s) 372
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 1 cut(s) 406
Hin6I GCGC 1 cut(s) 370
HinP1I GCGC 1 cut(s) 370
HindIII AAGCTT 1 cut(s) 453
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 2 cut(s) 188, 328
Hpy188III TCNNGA 5 cut(s) 12, 64, 134, 166, 415
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 2 cut(s) 10, 13
HpyAV CCTTC 2 cut(s) 244, 260
HpyCH4III ACNGT 2 cut(s) 49, 130
HpyCH4IV ACGT 4 cut(s) 8, 21, 273, 444
HpyCH4V TGCA 2 cut(s) 345, 406
HpySE526I ACGT 4 cut(s) 8, 21, 273, 444
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 1 cut(s) 406
HspAI GCGC 1 cut(s) 370
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 3 cut(s) 14, 58, 108
Lsp1109I GCAGC 1 cut(s) 408
LweI GCATC 1 cut(s) 171
MaeII ACGT 4 cut(s) 8, 21, 273, 444
MaeIII GTNAC 3 cut(s) 22, 124, 269
MboII GAAGA 3 cut(s) 82, 341, 344
MluCI AATT 1 cut(s) 311
MnlI CCTC 7 cut(s) 60, 152, 193, 196, 210, 422, 430
MroXI GAANNNNTTC 1 cut(s) 59
MseI TTAA 3 cut(s) 38, 450, 457
NlaIII CATG 1 cut(s) 406
NlaIV GGNNCC 1 cut(s) 33
NmuCI GTSAC 2 cut(s) 22, 269
NspI RCATGY 1 cut(s) 406
PaqCI CACCTGC 1 cut(s) 19
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 59
PflFI GACNNNGTC 1 cut(s) 443
PkrI GCNGC 1 cut(s) 398
PmaCI CACGTG 1 cut(s) 274
PmlI CACGTG 1 cut(s) 274
Ppu21I YACGTR 2 cut(s) 22, 274
PspCI CACGTG 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 33
PspPI GGNCC 1 cut(s) 439
PsyI GACNNNGTC 1 cut(s) 443
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SaqAI TTAA 3 cut(s) 38, 450, 457
SatI GCNGC 1 cut(s) 397
Sau96I GGNCC 1 cut(s) 439
SfaNI GCATC 1 cut(s) 171
SinI GGWCC 1 cut(s) 439
SmlI CTYRAG 2 cut(s) 153, 413
SmoI CTYRAG 2 cut(s) 153, 413
Sse9I AATT 1 cut(s) 311
TaaI ACNGT 2 cut(s) 49, 130
TaiI ACGT 4 cut(s) 11, 24, 276, 447
TasI AATT 1 cut(s) 311
Tru1I TTAA 3 cut(s) 38, 450, 457
Tru9I TTAA 3 cut(s) 38, 450, 457
TseFI GTSAC 2 cut(s) 22, 269
TseI GCWGC 1 cut(s) 396
Tsp45I GTSAC 2 cut(s) 22, 269
Tth111I GACNNNGTC 1 cut(s) 443
VpaK11BI GGWCC 1 cut(s) 439
XceI RCATGY 1 cut(s) 406
XmnI GAANNNNTTC 1 cut(s) 59
ZraI GACGTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.