MD16G1024400.v1.1

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000504
Physical Location & Seq
Reverse (-)
1764711 .. 1766288
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1024400.v1.1.491

Sequence Viewer

Length: 489 bp
ATGATGAGGTGGACTGATATATTCAACAGAGCTGGTGCTTGCAAGCTGACTGTGGAGGTTGAGGTAGAGATCAAAGCCAACGCTGATAAGTTGTACAAAGTCATCAGCAACCAGCACCACGACGTCCCCAAAGCAGCCTCTGATAAAATACACGATGTTGCAGTACATGAAGGTGACTGGGAAACTTCTGGCTCTGTCAAGCTCTGGAAATACACCCTAGATGGAAATGTCGAGACATTCAAGGAAAAGGTGGAAATAGATGAAGTAAACAAGTGGGTGAGTCTTACAGCTCTGGAAGGATCACATGTGCTGGACAATTACAAAAGCTACAAGATCATTTTCCAGGTCACTCCAAAGAGTGAAGGAGGTTTTGTGAAAATTACTTTAGAATATGAAAAACTCAACGAGAACGATCCGCCTCCACAGAAGTACCTCAGCTTTATGGTCAATGTCATTAAAGATATTGATGCACATCTTCTCAAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

163

Amino Acids

18.57

Weight (kDa)

5.54

Isoelectric Point (pI)

14.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 16 - 162 9.4e-53 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 126
AciI CCGC 1 cut(s) 416
AclWI GGATC 2 cut(s) 307, 407
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 3 cut(s) 95, 165, 431
AflIII ACRYGT 1 cut(s) 304
AgsI TTSAA 2 cut(s) 25, 241
AjnI CCWGG 1 cut(s) 342
AluBI AGCT 6 cut(s) 32, 46, 202, 290, 327, 438
AluI AGCT 6 cut(s) 32, 46, 202, 290, 327, 438
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 2 cut(s) 307, 407
AlwNI CAGNNNCTG 1 cut(s) 140
ApeKI GCWGC 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 185, 289
BaeI ACNNNNGTAYC 2 cut(s) 413, 446
BbvCI CCTCAGC 1 cut(s) 434
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 344
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 1 cut(s) 218
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 344
BmrFI CCNGG 1 cut(s) 344
BmrI ACTGGG 1 cut(s) 187
BmsI GCATC 1 cut(s) 457
BmuI ACTGGG 1 cut(s) 187
Bpu10I CCTNAGC 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 464
BsaBI GATNNNNATC 1 cut(s) 471
BsaHI GRCGYC 1 cut(s) 123
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
Bse1I ACTGG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 471
BseBI CCWGG 1 cut(s) 344
BseJI GATNNNNATC 1 cut(s) 471
BseMII CTCAG 1 cut(s) 448
BseNI ACTGG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 146
BslFI GGGAC 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 110
Bsp1407I TGTACA 1 cut(s) 93
Bsp143I GATC 4 cut(s) 69, 299, 333, 412
BspACI CCGC 1 cut(s) 416
BspCNI CTCAG 1 cut(s) 447
BspPI GGATC 2 cut(s) 307, 407
BsrGI TGTACA 1 cut(s) 93
BsrI ACTGG 1 cut(s) 182
BssMI GATC 4 cut(s) 69, 299, 333, 412
BssNI GRCGYC 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 1 cut(s) 52
BstACI GRCGYC 1 cut(s) 123
BstAUI TGTACA 1 cut(s) 93
BstC8I GCNNGC 2 cut(s) 40, 44
BstDEI CTNAG 1 cut(s) 434
BstKTI GATC 4 cut(s) 72, 302, 336, 415
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 4 cut(s) 69, 299, 333, 412
BstNI CCWGG 1 cut(s) 344
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 146
Cac8I GCNNGC 2 cut(s) 40, 44
CaiI CAGNNNCTG 1 cut(s) 140
Csp6I GTAC 3 cut(s) 94, 164, 430
CviAII CATG 2 cut(s) 167, 305
CviJI RGCY 9 cut(s) 32, 46, 77, 137, 192, 202, 290, 327, 438
CviKI_1 RGCY 9 cut(s) 32, 46, 77, 137, 192, 202, 290, 327, 438
CviQI GTAC 3 cut(s) 94, 164, 430
DdeI CTNAG 1 cut(s) 434
DpnI GATC 4 cut(s) 71, 301, 335, 414
DpnII GATC 4 cut(s) 69, 299, 333, 412
EciI GGCGGA 1 cut(s) 405
EcoRII CCWGG 1 cut(s) 342
FaeI CATG 2 cut(s) 170, 308
FaiI YATR 5 cut(s) 20, 168, 306, 393, 443
FaqI GGGAC 1 cut(s) 110
FatI CATG 2 cut(s) 166, 304
Fnu4HI GCNGC 1 cut(s) 135
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 218
GluI GCNGC 1 cut(s) 135
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 2 cut(s) 170, 308
HinfI GANTC 1 cut(s) 280
HphI GGTGA 2 cut(s) 185, 289
Hpy166II GTNNAC 2 cut(s) 12, 268
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 3 cut(s) 205, 232, 293
Hpy8I GTNNAC 2 cut(s) 12, 268
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 3 cut(s) 164, 290, 356
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 3 cut(s) 42, 161, 470
HpyF3I CTNAG 1 cut(s) 434
HpySE526I ACGT 1 cut(s) 123
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 2 cut(s) 170, 308
Kzo9I GATC 4 cut(s) 69, 299, 333, 412
LpnPI CCDG 9 cut(s) 18, 125, 163, 174, 190, 278, 296, 329, 356
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 1 cut(s) 457
MaeI CTAG 1 cut(s) 218
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 2 cut(s) 173, 346
MalI GATC 4 cut(s) 71, 301, 335, 414
MboI GATC 4 cut(s) 69, 299, 333, 412
MboII GAAGA 1 cut(s) 467
MluCI AATT 2 cut(s) 316, 378
MlyI GAGTC 1 cut(s) 289
MnlI CCTC 6 cut(s) 49, 55, 148, 359, 429, 443
MseI TTAA 1 cut(s) 456
MslI CAYNNNNRTG 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 344
MvaI CCWGG 1 cut(s) 344
NdeII GATC 4 cut(s) 69, 299, 333, 412
NlaIII CATG 2 cut(s) 170, 308
NmuCI GTSAC 2 cut(s) 173, 346
NspI RCATGY 1 cut(s) 308
PciI ACATGT 1 cut(s) 304
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
PscI ACATGT 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 342
PspGI CCWGG 1 cut(s) 342
PstNI CAGNNNCTG 1 cut(s) 140
RsaI GTAC 3 cut(s) 95, 165, 431
RsaNI GTAC 3 cut(s) 94, 164, 430
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 4 cut(s) 69, 299, 333, 412
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 1 cut(s) 344
SfaNI GCATC 1 cut(s) 457
SmiMI CAYNNNNRTG 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
Sse9I AATT 2 cut(s) 316, 378
SsiI CCGC 1 cut(s) 416
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 1 cut(s) 126
TaqI TCGA 1 cut(s) 231
TasI AATT 2 cut(s) 316, 378
TatI WGTACW 2 cut(s) 93, 163
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TseFI GTSAC 2 cut(s) 173, 346
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 2 cut(s) 173, 346
TspDTI ATGAA 3 cut(s) 183, 276, 408
XceI RCATGY 1 cut(s) 308
XspI CTAG 1 cut(s) 218
ZraI GACGTC 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.