Rorug04G0335400

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000504
Physical Location & Seq
Reverse (-)
50937013 .. 50938427
1415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0335400.1

Sequence Viewer

Length: 984 bp
ATGGGACTACGGGAGGGATTGGAGGAGCTCAGCCAAAGGCAAACTCGACCCTGCCGTCGGCTAAGCAGGACGTGCTCGACGGCGGCGACGCCGGACAAGCAGTCTTGCTCCATAGTGAAGTCGTCGATCCAATTGAGAGTGACGACGGAGGGAAGCGATCGTTTCGGGCGTGATGGCGAATCCAACATAGAGCATCCAGACTTTCTGTCAGCAACACGTTTTCCACTGAAGGATGTTATGGCATATGATCCAAGCACTGAAATCTCCAGGAATAAAGTCACAAGGAGGTTTTTATTCAGTGCCTCTATGATAGAGGCTCTCAGAGCGAAGTATGGGGAAAGCGCTGTAGGCTTAGAAGAAAACCAGAAACGCCCATCACGTGTTGATGCTTTAACGGCTTTCATATGGAGTCGATATATGGCCAATACCAATAAGATTACAGGACCTCATGATGAGAAGTTGTATAGGATCGCCCATGCTGTGAACCTACGCCCAAGGTTTGATCCACCATTGCCACAACATTCTTTTGGAAACATTTACCGTGGTGCCACGTCAGGTCCCTTACTAAGTACTGGGGATGCATGCAGTGCATATGGTCGGGCTATGAGGGAAGTACGAGAAGAAATAAACAAGATCGAGAATGACTGCGTCAAACGACTACAGCAGGGTGCTGAGCAGTCAGGGCTCCCCTTCAATGAGAATACTGGTAGACTAACCGAACTAGAGCTGGTTACGTTGGGCTTCAGTAGCTATTGCAGGTTTCCAGTGTATGATAATGATTTCGGTTGGGGAAGGCCTGCGTGGGTGTTCTCAACACCATTGACCTTCAAGAACGTAGCAACTTTCATGGACACCAAAGAGGGTGATGGAATAGAGGTATACATCAGTTTGGAGGAGCAACTCATGGCTAAATTAGAAACTGATGCCGAGTTCTTGGCCCCTATGTGTCTCCAAGTGGGCGCTGAAGAGCCCTTTGGTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

327

Amino Acids

36.74

Weight (kDa)

5.96

Isoelectric Point (pI)

53.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 66 - 311 6.8e-30 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 54
Acc36I ACCTGC 1 cut(s) 747
AccB1I GGYRCC 1 cut(s) 545
AccI GTMKAC 2 cut(s) 709, 879
AciI CCGC 1 cut(s) 83
AclWI GGATC 4 cut(s) 121, 242, 476, 497
AcoI YGGCCR 1 cut(s) 420
AcuI CTGAAG 3 cut(s) 248, 727, 984
AcvI CACGTG 1 cut(s) 380
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 2 cut(s) 571, 615
AfeI AGCGCT 1 cut(s) 343
AfiI CCNNNNNNNGG 1 cut(s) 57
AflIII ACRYGT 2 cut(s) 215, 379
AgsI TTSAA 2 cut(s) 694, 829
AhdI GACNNNNNGTC 2 cut(s) 100, 205
AjiI CACGTC 2 cut(s) 72, 552
AjnI CCWGG 1 cut(s) 266
AjuI GAANNNNNNNTTGG 1 cut(s) 957
AluBI AGCT 3 cut(s) 28, 727, 750
AluI AGCT 3 cut(s) 28, 727, 750
Alw21I GWGCWC 2 cut(s) 30, 77
Alw26I GTCTC 1 cut(s) 953
AlwI GGATC 4 cut(s) 121, 242, 476, 497
Aor51HI AGCGCT 1 cut(s) 343
AoxI GGCC 3 cut(s) 420, 794, 936
AspLEI GCGC 2 cut(s) 344, 962
AspS9I GGNCC 3 cut(s) 443, 557, 937
AsuHPI GGTGA 1 cut(s) 875
AvaII GGWCC 2 cut(s) 443, 557
BalI TGGCCA 1 cut(s) 422
BanI GGYRCC 1 cut(s) 545
BanII GRGCYC 3 cut(s) 30, 687, 972
BbrPI CACGTG 1 cut(s) 380
Bbv12I GWGCWC 2 cut(s) 30, 77
BccI CCATC 3 cut(s) 167, 382, 860
BceAI ACGGC 3 cut(s) 39, 96, 411
BciT130I CCWGG 1 cut(s) 268
BcoDI GTCTC 1 cut(s) 953
BfaI CTAG 1 cut(s) 722
BfmI CTRYAG 2 cut(s) 345, 659
BfoI RGCGCY 2 cut(s) 345, 963
BfuAI ACCTGC 1 cut(s) 747
BisI GCNGC 1 cut(s) 84
BlpI GCTNAGC 3 cut(s) 29, 62, 672
BlsI GCNGC 1 cut(s) 85
BmcAI AGTACT 1 cut(s) 571
Bme1390I CCNGG 1 cut(s) 268
Bme18I GGWCC 2 cut(s) 443, 557
BmeRI GACNNNNNGTC 2 cut(s) 100, 205
BmgBI CACGTC 2 cut(s) 72, 552
BmgT120I GGNCC 3 cut(s) 443, 557, 937
BmiI GGNNCC 4 cut(s) 547, 559, 686, 939
BmrFI CCNGG 1 cut(s) 268
BmrI ACTGGG 1 cut(s) 582
BmsI GCATC 4 cut(s) 202, 376, 568, 913
BmuI ACTGGG 1 cut(s) 582
BpmI CTGGAG 1 cut(s) 250
Bpu1102I GCTNAGC 3 cut(s) 29, 62, 672
BsaAI YACGTR 1 cut(s) 380
BsaHI GRCGYC 1 cut(s) 89
BsaJI CCNNGG 2 cut(s) 494, 541
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse1I ACTGG 3 cut(s) 577, 709, 764
Bse3DI GCAATG 1 cut(s) 509
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 2 cut(s) 494, 541
BseGI GGATG 3 cut(s) 193, 238, 583
BseLI CCNNNNNNNGG 1 cut(s) 57
BseMI GCAATG 1 cut(s) 509
BseMII CTCAG 3 cut(s) 43, 334, 663
BseNI ACTGG 3 cut(s) 577, 709, 764
BseRI GAGGAG 2 cut(s) 38, 908
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 3 cut(s) 422, 796, 938
BshNI GGYRCC 1 cut(s) 545
BsiEI CGRYCG 1 cut(s) 160
BsiHKAI GWGCWC 2 cut(s) 30, 77
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 2 cut(s) 18, 543
BslI CCNNNNNNNGG 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 953
BsmFI GGGAC 2 cut(s) 18, 543
BsnI GGCC 3 cut(s) 422, 796, 938
Bsp1286I GDGCHC 4 cut(s) 30, 77, 687, 972
Bsp143I GATC 6 cut(s) 126, 157, 247, 468, 502, 633
Bsp1720I GCTNAGC 3 cut(s) 29, 62, 672
BspACI CCGC 1 cut(s) 83
BspANI GGCC 3 cut(s) 422, 796, 938
BspCNI CTCAG 3 cut(s) 42, 333, 664
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 4 cut(s) 547, 559, 686, 939
BspMI ACCTGC 1 cut(s) 747
BspPI GGATC 4 cut(s) 121, 242, 476, 497
BspQI GCTCTTC 1 cut(s) 960
BspT107I GGYRCC 1 cut(s) 545
BsrDI GCAATG 1 cut(s) 509
BsrI ACTGG 3 cut(s) 577, 709, 764
BssECI CCNNGG 2 cut(s) 494, 541
BssMI GATC 6 cut(s) 126, 157, 247, 468, 502, 633
BssNAI GTATAC 1 cut(s) 880
BssNI GRCGYC 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 494
Bst1107I GTATAC 1 cut(s) 880
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 1 cut(s) 542
Bst6I CTCTTC 1 cut(s) 960
BstACI GRCGYC 1 cut(s) 89
BstAPI GCANNNNNTGC 2 cut(s) 72, 587
BstBAI YACGTR 1 cut(s) 380
BstC8I GCNNGC 2 cut(s) 583, 798
BstDEI CTNAG 6 cut(s) 29, 62, 320, 352, 566, 672
BstDSI CCRYGG 1 cut(s) 541
BstF5I GGATG 3 cut(s) 193, 238, 583
BstH2I RGCGCY 2 cut(s) 345, 963
BstHHI GCGC 2 cut(s) 344, 962
BstKTI GATC 6 cut(s) 129, 160, 250, 471, 505, 636
BstMAI GTCTC 1 cut(s) 953
BstMBI GATC 6 cut(s) 126, 157, 247, 468, 502, 633
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 8 cut(s) 72, 97, 323, 348, 395, 587, 682, 747
BstNI CCWGG 1 cut(s) 268
BstNSI RCATGY 1 cut(s) 585
BstSCI CCNGG 1 cut(s) 266
BstSFI CTRYAG 2 cut(s) 345, 659
BstZ17I GTATAC 1 cut(s) 880
BsuRI GGCC 3 cut(s) 422, 796, 938
BtgI CCRYGG 1 cut(s) 541
BtrI CACGTC 2 cut(s) 72, 552
BtsCI GGATG 3 cut(s) 193, 238, 583
BtsI GCAGTG 1 cut(s) 592
BtsIMutI CAGTG 5 cut(s) 224, 255, 304, 592, 771
BveI ACCTGC 1 cut(s) 747
Cac8I GCNNGC 2 cut(s) 583, 798
CciI TCATGA 1 cut(s) 448
CfoI GCGC 2 cut(s) 344, 962
Cfr13I GGNCC 3 cut(s) 443, 557, 937
CseI GACGC 2 cut(s) 97, 637
Csp6I GTAC 2 cut(s) 570, 614
CviAII CATG 5 cut(s) 449, 476, 582, 847, 904
CviQI GTAC 2 cut(s) 570, 614
DdeI CTNAG 6 cut(s) 29, 62, 320, 352, 566, 672
DpnI GATC 6 cut(s) 128, 159, 249, 470, 504, 635
DpnII GATC 6 cut(s) 126, 157, 247, 468, 502, 633
DrdI GACNNNNNNGTC 1 cut(s) 54
DriI GACNNNNNGTC 2 cut(s) 100, 205
DseDI GACNNNNNNGTC 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 420
Eam1104I CTCTTC 1 cut(s) 960
Eam1105I GACNNNNNGTC 2 cut(s) 100, 205
EarI CTCTTC 1 cut(s) 960
Ecl136II GAGCTC 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 494
Eco147I AGGCCT 1 cut(s) 796
Eco24I GRGCYC 3 cut(s) 30, 687, 972
Eco47I GGWCC 2 cut(s) 443, 557
Eco47III AGCGCT 1 cut(s) 343
Eco53kI GAGCTC 1 cut(s) 28
Eco57I CTGAAG 3 cut(s) 248, 727, 984
Eco72I CACGTG 1 cut(s) 380
EcoICRI GAGCTC 1 cut(s) 28
EcoO109I RGGNCCY 2 cut(s) 443, 557
EcoRII CCWGG 1 cut(s) 266
EcoT14I CCWWGG 1 cut(s) 494
EcoT22I ATGCAT 1 cut(s) 583
EcoT38I GRGCYC 3 cut(s) 30, 687, 972
ErhI CCWWGG 1 cut(s) 494
FaeI CATG 5 cut(s) 452, 479, 585, 850, 907
FaqI GGGAC 2 cut(s) 18, 543
FatI CATG 5 cut(s) 448, 475, 581, 846, 903
FauNDI CATATG 3 cut(s) 244, 404, 592
FblI GTMKAC 2 cut(s) 709, 879
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 3 cut(s) 180, 245, 590
FriOI GRGCYC 3 cut(s) 30, 687, 972
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 722
GlaI GCGC 2 cut(s) 343, 961
GluI GCNGC 1 cut(s) 84
GsuI CTGGAG 1 cut(s) 250
HaeII RGCGCY 2 cut(s) 345, 963
HaeIII GGCC 3 cut(s) 422, 796, 938
HapII CCGG 1 cut(s) 92
HgaI GACGC 2 cut(s) 97, 637
HhaI GCGC 2 cut(s) 344, 962
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 5 cut(s) 452, 479, 585, 850, 907
Hin6I GCGC 2 cut(s) 342, 960
HinP1I GCGC 2 cut(s) 342, 960
HinfI GANTC 2 cut(s) 179, 409
HpaII CCGG 1 cut(s) 92
HphI GGTGA 1 cut(s) 875
Hpy166II GTNNAC 3 cut(s) 484, 710, 880
Hpy188I TCNGA 1 cut(s) 323
Hpy188III TCNNGA 4 cut(s) 197, 449, 637, 829
Hpy8I GTNNAC 3 cut(s) 484, 710, 880
Hpy99I CGWCG 5 cut(s) 60, 82, 91, 127, 148
HpyAV CCTTC 4 cut(s) 223, 700, 786, 835
HpyCH4III ACNGT 1 cut(s) 542
HpyCH4IV ACGT 6 cut(s) 71, 217, 379, 551, 734, 834
HpyCH4V TGCA 4 cut(s) 581, 585, 590, 756
HpyF10VI GCNNNNNNNGC 8 cut(s) 72, 97, 323, 348, 395, 587, 682, 747
HpyF3I CTNAG 6 cut(s) 29, 62, 320, 352, 566, 672
HpySE526I ACGT 6 cut(s) 71, 217, 379, 551, 734, 834
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 5 cut(s) 452, 479, 585, 850, 907
HspAI GCGC 2 cut(s) 342, 960
Kzo9I GATC 6 cut(s) 126, 157, 247, 468, 502, 633
LguI GCTCTTC 1 cut(s) 960
LmnI GCTCC 4 cut(s) 25, 113, 690, 895
LweI GCATC 4 cut(s) 202, 376, 568, 913
MaeI CTAG 1 cut(s) 722
MaeII ACGT 6 cut(s) 71, 217, 379, 551, 734, 834
MaeIII GTNAC 3 cut(s) 139, 277, 730
MalI GATC 6 cut(s) 128, 159, 249, 470, 504, 635
MboI GATC 6 cut(s) 126, 157, 247, 468, 502, 633
MboII GAAGA 3 cut(s) 368, 632, 977
MfeI CAATTG 1 cut(s) 131
MhlI GDGCHC 4 cut(s) 30, 77, 687, 972
MlsI TGGCCA 1 cut(s) 422
MluCI AATT 2 cut(s) 131, 911
MluNI TGGCCA 1 cut(s) 422
MlyI GAGTC 1 cut(s) 418
MmeI TCCRAC 1 cut(s) 207
Mox20I TGGCCA 1 cut(s) 422
Mph1103I ATGCAT 1 cut(s) 583
MscI TGGCCA 1 cut(s) 422
MseI TTAA 2 cut(s) 392, 982
Msp20I TGGCCA 1 cut(s) 422
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 268
MunI CAATTG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 268
MwoI GCNNNNNNNGC 8 cut(s) 72, 97, 323, 348, 395, 587, 682, 747
NdeI CATATG 3 cut(s) 244, 404, 592
NdeII GATC 6 cut(s) 126, 157, 247, 468, 502, 633
NlaIII CATG 5 cut(s) 452, 479, 585, 850, 907
NlaIV GGNNCC 4 cut(s) 547, 559, 686, 939
NmeAIII GCCGAG 1 cut(s) 952
NmuCI GTSAC 2 cut(s) 139, 277
NsiI ATGCAT 1 cut(s) 583
NspI RCATGY 1 cut(s) 585
PaeI GCATGC 1 cut(s) 585
PagI TCATGA 1 cut(s) 448
PceI AGGCCT 1 cut(s) 796
PciSI GCTCTTC 1 cut(s) 960
PcsI WCGNNNNNNNCGW 4 cut(s) 52, 83, 166, 376
PfeI GAWTC 1 cut(s) 179
PflFI GACNNNGTC 1 cut(s) 647
PfoI TCCNGGA 1 cut(s) 266
PkrI GCNGC 1 cut(s) 85
Ple19I CGATCG 1 cut(s) 160
PleI GAGTC 1 cut(s) 417
PmaCI CACGTG 1 cut(s) 380
PmlI CACGTG 1 cut(s) 380
PpsI GAGTC 1 cut(s) 417
Ppu21I YACGTR 1 cut(s) 380
PpuMI RGGWCCY 2 cut(s) 443, 557
Psp124BI GAGCTC 1 cut(s) 30
Psp5II RGGWCCY 2 cut(s) 443, 557
Psp6I CCWGG 1 cut(s) 266
PspCI CACGTG 1 cut(s) 380
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 4 cut(s) 547, 559, 686, 939
PspPI GGNCC 3 cut(s) 443, 557, 937
PspPPI RGGWCCY 2 cut(s) 443, 557
PsyI GACNNNGTC 1 cut(s) 647
PvuI CGATCG 1 cut(s) 160
RsaI GTAC 2 cut(s) 571, 615
RsaNI GTAC 2 cut(s) 570, 614
SacI GAGCTC 1 cut(s) 30
SapI GCTCTTC 1 cut(s) 960
SaqAI TTAA 2 cut(s) 392, 982
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 6 cut(s) 126, 157, 247, 468, 502, 633
Sau96I GGNCC 3 cut(s) 443, 557, 937
ScaI AGTACT 1 cut(s) 571
SchI GAGTC 1 cut(s) 418
ScrFI CCNGG 1 cut(s) 268
SduI GDGCHC 4 cut(s) 30, 77, 687, 972
SfaNI GCATC 4 cut(s) 202, 376, 568, 913
SfcI CTRYAG 2 cut(s) 345, 659
SinI GGWCC 2 cut(s) 443, 557
SphI GCATGC 1 cut(s) 585
Sse9I AATT 2 cut(s) 131, 911
SseBI AGGCCT 1 cut(s) 796
SsiI CCGC 1 cut(s) 83
SspMI CTAG 1 cut(s) 722
SstI GAGCTC 1 cut(s) 30
StuI AGGCCT 1 cut(s) 796
StyD4I CCNGG 1 cut(s) 266
StyI CCWWGG 1 cut(s) 494
TaaI ACNGT 1 cut(s) 542
TaiI ACGT 6 cut(s) 74, 220, 382, 554, 737, 837
TaqI TCGA 5 cut(s) 46, 77, 125, 412, 636
TasI AATT 2 cut(s) 131, 911
TatI WGTACW 1 cut(s) 569
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 2 cut(s) 392, 982
Tru9I TTAA 2 cut(s) 392, 982
TscAI CASTG 5 cut(s) 231, 262, 304, 592, 771
TseFI GTSAC 2 cut(s) 139, 277
Tsp45I GTSAC 2 cut(s) 139, 277
TspDTI ATGAA 2 cut(s) 391, 835
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 5 cut(s) 231, 262, 304, 592, 771
Tth111I GACNNNGTC 1 cut(s) 647
VpaK11BI GGWCC 2 cut(s) 443, 557
XceI RCATGY 1 cut(s) 585
XmiI GTMKAC 2 cut(s) 709, 879
XspI CTAG 1 cut(s) 722
ZrmI AGTACT 1 cut(s) 571
Zsp2I ATGCAT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.