Rh4BG400700

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000504
Physical Location & Seq
Forward (+)
55121850 .. 55122252
403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG400700.1

Sequence Viewer

Length: 318 bp
ATGACAGATATGACTTTGAGTGATACTACAAGCCGCGGTGATCAAACTTACCAGGTGGAGACTCTGGAGGAGCTGGTAGAGATCAAAGCTTCAGCTGATGAAGTGTACAAGGTACTCAACAACCAGCATCACCTCATTCCCGAAGCCGCTTCTGATCATGTACAGGAGGTTGCAGTGCATGAAGGTGACTGGGAAACTACGTACTGGTTCTGTAAAGGTTTGGAAATACACTATAGGTGGAAATACACTATAGATGGAAGAGCTGAAAGCTTCAAGGAAAAGGTGGAAATAGATGAAGCAAACAAGTCGGTAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

105

Amino Acids

12.21

Weight (kDa)

4.64

Isoelectric Point (pI)

24.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 19 - 103 5.7e-18 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 36
AciI CCGC 3 cut(s) 34, 36, 147
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 4 cut(s) 107, 114, 162, 203
AgsI TTSAA 1 cut(s) 274
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 5 cut(s) 73, 89, 95, 263, 270
AluI AGCT 5 cut(s) 73, 89, 95, 263, 270
Alw26I GTCTC 1 cut(s) 53
AsuHPI GGTGA 3 cut(s) 50, 122, 197
BccI CCATC 1 cut(s) 248
BcgI CGANNNNNNTGC 1 cut(s) 288
BciT130I CCWGG 1 cut(s) 53
BclI TGATCA 2 cut(s) 40, 154
BcoDI GTCTC 1 cut(s) 53
BfmI CTRYAG 2 cut(s) 232, 249
BisI GCNGC 2 cut(s) 34, 147
BlsI GCNGC 2 cut(s) 35, 148
Bme1390I CCNGG 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 53
BmrI ACTGGG 1 cut(s) 199
BmsI GCATC 1 cut(s) 136
BmuI ACTGGG 1 cut(s) 199
BpmI CTGGAG 1 cut(s) 86
BsaAI YACGTR 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 34
Bse1I ACTGG 2 cut(s) 194, 209
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 34
BseNI ACTGG 2 cut(s) 194, 209
BseRI GAGGAG 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 36
BsmAI GTCTC 1 cut(s) 53
Bsp1407I TGTACA 2 cut(s) 105, 160
Bsp143I GATC 3 cut(s) 40, 81, 154
BspACI CCGC 3 cut(s) 34, 36, 147
BspFNI CGCG 1 cut(s) 36
BspQI GCTCTTC 1 cut(s) 253
BsrGI TGTACA 2 cut(s) 105, 160
BsrI ACTGG 2 cut(s) 194, 209
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 3 cut(s) 40, 81, 154
Bst2UI CCWGG 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 253
BstAUI TGTACA 2 cut(s) 105, 160
BstBAI YACGTR 1 cut(s) 201
BstDSI CCRYGG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 36
BstKTI GATC 3 cut(s) 43, 84, 157
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 3 cut(s) 40, 81, 154
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 2 cut(s) 232, 249
BstSNI TACGTA 1 cut(s) 201
BstUI CGCG 1 cut(s) 36
BtgI CCRYGG 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 180
Cfr42I CCGCGG 1 cut(s) 37
CsiI ACCWGGT 1 cut(s) 51
Csp6I GTAC 4 cut(s) 106, 113, 161, 202
CviAII CATG 2 cut(s) 158, 179
CviJI RGCY 7 cut(s) 33, 73, 89, 95, 146, 263, 270
CviKI_1 RGCY 7 cut(s) 33, 73, 89, 95, 146, 263, 270
CviQI GTAC 4 cut(s) 106, 113, 161, 202
DpnI GATC 3 cut(s) 42, 83, 156
DpnII GATC 3 cut(s) 40, 81, 154
Eam1104I CTCTTC 1 cut(s) 253
EarI CTCTTC 1 cut(s) 253
Eco105I TACGTA 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 51
FaeI CATG 2 cut(s) 161, 182
FaiI YATR 5 cut(s) 11, 159, 180, 234, 251
FatI CATG 2 cut(s) 157, 178
FbaI TGATCA 2 cut(s) 40, 154
Fnu4HI GCNGC 2 cut(s) 34, 147
Fsp4HI GCNGC 2 cut(s) 34, 147
GluI GCNGC 2 cut(s) 34, 147
GsuI CTGGAG 1 cut(s) 86
Hin1II CATG 2 cut(s) 161, 182
HindIII AAGCTT 2 cut(s) 87, 268
HinfI GANTC 1 cut(s) 61
HphI GGTGA 3 cut(s) 50, 122, 197
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 2 cut(s) 65, 140
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 2 cut(s) 173, 178
HpySE526I ACGT 1 cut(s) 200
Hsp92II CATG 2 cut(s) 161, 182
Ksp22I TGATCA 2 cut(s) 40, 154
KspI CCGCGG 1 cut(s) 37
Kzo9I GATC 3 cut(s) 40, 81, 154
LguI GCTCTTC 1 cut(s) 253
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 8 cut(s) 38, 50, 59, 65, 137, 149, 175, 190
LweI GCATC 1 cut(s) 136
MabI ACCWGGT 1 cut(s) 51
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 1 cut(s) 185
MalI GATC 3 cut(s) 42, 83, 156
MboI GATC 3 cut(s) 40, 81, 154
MboII GAAGA 1 cut(s) 270
MlyI GAGTC 1 cut(s) 55
MnlI CCTC 3 cut(s) 61, 143, 160
MslI CAYNNNNRTG 1 cut(s) 183
MspA1I CMGCKG 2 cut(s) 36, 95
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
MvnI CGCG 1 cut(s) 36
NdeII GATC 3 cut(s) 40, 81, 154
NlaIII CATG 2 cut(s) 161, 182
NmuCI GTSAC 1 cut(s) 185
PciSI GCTCTTC 1 cut(s) 253
PkrI GCNGC 2 cut(s) 35, 148
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
Ppu21I YACGTR 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 4 cut(s) 107, 114, 162, 203
RsaNI GTAC 4 cut(s) 106, 113, 161, 202
RseI CAYNNNNRTG 1 cut(s) 183
SacII CCGCGG 1 cut(s) 37
SapI GCTCTTC 1 cut(s) 253
SatI GCNGC 2 cut(s) 34, 147
Sau3AI GATC 3 cut(s) 40, 81, 154
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 53
SexAI ACCWGGT 1 cut(s) 51
SfaNI GCATC 1 cut(s) 136
SfcI CTRYAG 2 cut(s) 232, 249
Sfr303I CCGCGG 1 cut(s) 37
SgrBI CCGCGG 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 183
SnaBI TACGTA 1 cut(s) 201
SsiI CCGC 3 cut(s) 34, 36, 147
StyD4I CCNGG 1 cut(s) 51
TaiI ACGT 1 cut(s) 203
TatI WGTACW 2 cut(s) 105, 160
TauI GCSGC 2 cut(s) 36, 149
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 3 cut(s) 114, 195, 309
TspRI CASTG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.