Prupe.1G327600_v2.0.a1

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000504
Physical Location & Seq
Forward (+)
31126656 .. 31127642
987 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G327600.2

Sequence Viewer

Length: 477 bp
ATGGCTTTGAGTGGAGCTAGTAATTACAAGGCGGAGACTGTGGAGGCTGAGGTAGAGATCAAATCCAATTCTGGCAAATTGTTCAAGCTCATCAGCAACCAGCACCACGACGTTCCGAAGGCCTCCTCTGATAATGTACATGATGTTGCGGTACATGAAGGTGACTGGGAAACTTCTGGTTCTGTCAAGCTTTGGAAATACACCTTAGATGGAAATGTTGAAACTTTAAAGGAAAAGGTAGAAATAGATGAAGCGAACAAGTTGGTGAGTCTTACTGCTTTGGAAGGATCACATGTGTTGGAGAAGTACAAAAGCTGTAAGATCATCTTCCAGGTCACTCCAAAGAGTGAAGGAGGTTTGGTGAAAATTACCCTAGGATATCAAAGACTTAATGAGAACGATCCGCCTCCACATAAGTACCTCCGGTTTTTGGTCAATGTCATTCAAGATATTGATGCACATCTTCTTAAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

159

Amino Acids

17.64

Weight (kDa)

5.81

Isoelectric Point (pI)

17.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 32, 149, 404
AclWI GGATC 2 cut(s) 295, 395
AfaI GTAC 4 cut(s) 138, 153, 308, 419
AfiI CCNNNNNNNGG 1 cut(s) 430
AflII CTTAAG 1 cut(s) 467
AflIII ACRYGT 1 cut(s) 292
AgsI TTSAA 3 cut(s) 85, 221, 446
AjnI CCWGG 1 cut(s) 330
AluBI AGCT 4 cut(s) 17, 88, 190, 315
AluI AGCT 4 cut(s) 17, 88, 190, 315
Alw26I GTCTC 1 cut(s) 29
AlwI GGATC 2 cut(s) 295, 395
AoxI GGCC 1 cut(s) 120
AspA2I CCTAGG 1 cut(s) 373
AsuHPI GGTGA 3 cut(s) 173, 277, 373
AvrII CCTAGG 1 cut(s) 373
BaeI ACNNNNGTAYC 2 cut(s) 401, 434
BbvCI CCTCAGC 1 cut(s) 48
BccI CCATC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 332
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 2 cut(s) 18, 374
BfrI CTTAAG 1 cut(s) 467
BlnI CCTAGG 1 cut(s) 373
Bme1390I CCNGG 1 cut(s) 332
BmrFI CCNGG 1 cut(s) 332
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 1 cut(s) 445
BmuI ACTGGG 1 cut(s) 175
Bpu10I CCTNAGC 1 cut(s) 48
BsaBI GATNNNNATC 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 373
BsaWI WCCGGW 1 cut(s) 423
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse1I ACTGG 1 cut(s) 170
Bse8I GATNNNNATC 1 cut(s) 459
BseBI CCWGG 1 cut(s) 332
BseDI CCNNGG 1 cut(s) 373
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 115
BshFI GGCC 1 cut(s) 122
BsiSI CCGG 1 cut(s) 424
BslI CCNNNNNNNGG 1 cut(s) 430
BsmAI GTCTC 1 cut(s) 29
BsnI GGCC 1 cut(s) 122
Bsp1407I TGTACA 1 cut(s) 136
Bsp143I GATC 4 cut(s) 57, 287, 321, 400
BspACI CCGC 3 cut(s) 32, 149, 404
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 40
BspPI GGATC 2 cut(s) 295, 395
BspTI CTTAAG 1 cut(s) 467
BsrGI TGTACA 1 cut(s) 136
BsrI ACTGG 1 cut(s) 170
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 4 cut(s) 57, 287, 321, 400
BssT1I CCWWGG 1 cut(s) 373
Bst2UI CCWGG 1 cut(s) 332
Bst4CI ACNGT 1 cut(s) 40
BstAFI CTTAAG 1 cut(s) 467
BstAUI TGTACA 1 cut(s) 136
BstDEI CTNAG 2 cut(s) 48, 205
BstKTI GATC 4 cut(s) 60, 290, 324, 403
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 4 cut(s) 57, 287, 321, 400
BstNI CCWGG 1 cut(s) 332
BstNSI RCATGY 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 330
BsuRI GGCC 1 cut(s) 122
Csp6I GTAC 4 cut(s) 137, 152, 307, 418
CviAII CATG 3 cut(s) 140, 155, 293
CviJI RGCY 7 cut(s) 5, 17, 47, 88, 122, 190, 315
CviKI_1 RGCY 7 cut(s) 5, 17, 47, 88, 122, 190, 315
CviQI GTAC 4 cut(s) 137, 152, 307, 418
DdeI CTNAG 2 cut(s) 48, 205
DpnI GATC 4 cut(s) 59, 289, 323, 402
DpnII GATC 4 cut(s) 57, 287, 321, 400
DraI TTTAAA 1 cut(s) 228
EciI GGCGGA 2 cut(s) 47, 393
Eco130I CCWWGG 1 cut(s) 373
Eco147I AGGCCT 1 cut(s) 122
Eco32I GATATC 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 330
EcoRV GATATC 1 cut(s) 380
EcoT14I CCWWGG 1 cut(s) 373
ErhI CCWWGG 1 cut(s) 373
FaeI CATG 3 cut(s) 143, 158, 296
FaiI YATR 4 cut(s) 141, 156, 294, 414
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FatI CATG 3 cut(s) 139, 154, 292
FspBI CTAG 2 cut(s) 18, 374
HaeIII GGCC 1 cut(s) 122
HapII CCGG 1 cut(s) 424
Hin1II CATG 3 cut(s) 143, 158, 296
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 1 cut(s) 268
HpaII CCGG 1 cut(s) 424
HphI GGTGA 3 cut(s) 173, 277, 373
Hpy188I TCNGA 2 cut(s) 117, 130
Hpy188III TCNNGA 1 cut(s) 446
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 4 cut(s) 112, 152, 278, 344
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 458
HpyF3I CTNAG 2 cut(s) 48, 205
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 3 cut(s) 143, 158, 296
Kzo9I GATC 4 cut(s) 57, 287, 321, 400
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 7 cut(s) 57, 113, 151, 162, 317, 344, 437
LweI GCATC 1 cut(s) 445
MaeI CTAG 2 cut(s) 18, 374
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 2 cut(s) 161, 334
MalI GATC 4 cut(s) 59, 289, 323, 402
MboI GATC 4 cut(s) 57, 287, 321, 400
MboII GAAGA 2 cut(s) 319, 455
MluCI AATT 4 cut(s) 22, 67, 77, 366
MlyI GAGTC 1 cut(s) 277
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 7 cut(s) 37, 43, 133, 136, 347, 417, 431
MseI TTAA 3 cut(s) 227, 390, 468
MslI CAYNNNNRTG 1 cut(s) 159
MspCI CTTAAG 1 cut(s) 467
MspI CCGG 1 cut(s) 424
MspR9I CCNGG 1 cut(s) 332
MvaI CCWGG 1 cut(s) 332
NdeII GATC 4 cut(s) 57, 287, 321, 400
NlaIII CATG 3 cut(s) 143, 158, 296
NmuCI GTSAC 2 cut(s) 161, 334
NspI RCATGY 1 cut(s) 296
PceI AGGCCT 1 cut(s) 122
PciI ACATGT 1 cut(s) 292
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
PscI ACATGT 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 330
PspGI CCWGG 1 cut(s) 330
RsaI GTAC 4 cut(s) 138, 153, 308, 419
RsaNI GTAC 4 cut(s) 137, 152, 307, 418
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 3 cut(s) 227, 390, 468
Sau3AI GATC 4 cut(s) 57, 287, 321, 400
SchI GAGTC 1 cut(s) 277
ScrFI CCNGG 1 cut(s) 332
SfaNI GCATC 1 cut(s) 445
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
Sse9I AATT 4 cut(s) 22, 67, 77, 366
SseBI AGGCCT 1 cut(s) 122
SsiI CCGC 3 cut(s) 32, 149, 404
SspMI CTAG 2 cut(s) 18, 374
StuI AGGCCT 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 330
StyI CCWWGG 1 cut(s) 373
TaaI ACNGT 1 cut(s) 40
TaiI ACGT 1 cut(s) 114
TasI AATT 4 cut(s) 22, 67, 77, 366
TatI WGTACW 2 cut(s) 136, 306
Tru1I TTAA 3 cut(s) 227, 390, 468
Tru9I TTAA 3 cut(s) 227, 390, 468
TseFI GTSAC 2 cut(s) 161, 334
Tsp45I GTSAC 2 cut(s) 161, 334
TspDTI ATGAA 2 cut(s) 171, 264
Vha464I CTTAAG 1 cut(s) 467
XceI RCATGY 1 cut(s) 296
XmaJI CCTAGG 1 cut(s) 373
XspI CTAG 2 cut(s) 18, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.