Rroxscaffold_5G00382450

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000504
Physical Location & Seq
Forward (+)
62287170 .. 62287648
479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00382450.1

Sequence Viewer

Length: 324 bp
ATGAAGTGTACATGGTACTCAGCAACCAGCATCACCTCATTCCCCGAAGCCGCTTCTGATCATGTACAGGAGGTTGCAGTGCATGAAGGTGACTGGGAAACTACTGGTTCTGTAAAGGTTTGGAAATATACTATAGATGGAAGAGCTGAAAGCTTCAAGGAAAAGGTGGAAGTAGATGAAGCAAACAAGTCGGTCATTCCTAAGAGTACTACTGGTCAGGAAGGAGAAGGGGGTTTGGTCAAAATTACTGTGGAATATGGGAAGCTCAATGAGAATAATGCTCCTTCGATCCTCATAACTACCTCCGCTTTGCCGTCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

107

Amino Acids

11.62

Weight (kDa)

4.83

Isoelectric Point (pI)

21.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 12 - 66 4.3e-18 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 51, 306
AclWI GGATC 1 cut(s) 283
AfaI GTAC 4 cut(s) 10, 17, 66, 208
AgsI TTSAA 1 cut(s) 157
AluBI AGCT 3 cut(s) 146, 153, 265
AluI AGCT 3 cut(s) 146, 153, 265
AlwI GGATC 1 cut(s) 283
AsuHPI GGTGA 2 cut(s) 25, 101
BccI CCATC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 298
BcgI CGANNNNNNTGC 2 cut(s) 171, 205
BclI TGATCA 1 cut(s) 58
BfmI CTRYAG 1 cut(s) 132
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
BmcAI AGTACT 1 cut(s) 208
BmrI ACTGGG 1 cut(s) 103
BmsI GCATC 1 cut(s) 39
BmuI ACTGGG 1 cut(s) 103
Bse1I ACTGG 3 cut(s) 98, 109, 217
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 3 cut(s) 98, 109, 217
Bsp1407I TGTACA 2 cut(s) 8, 64
Bsp143I GATC 2 cut(s) 58, 288
BspACI CCGC 2 cut(s) 51, 306
BspCNI CTCAG 1 cut(s) 32
BspPI GGATC 1 cut(s) 283
BspQI GCTCTTC 1 cut(s) 136
BsrGI TGTACA 2 cut(s) 8, 64
BsrI ACTGG 3 cut(s) 98, 109, 217
BssMI GATC 2 cut(s) 58, 288
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 136
BstAUI TGTACA 2 cut(s) 8, 64
BstDEI CTNAG 2 cut(s) 19, 201
BstKTI GATC 2 cut(s) 61, 291
BstMBI GATC 2 cut(s) 58, 288
BstSFI CTRYAG 1 cut(s) 132
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
Csp6I GTAC 4 cut(s) 9, 16, 65, 207
CviAII CATG 3 cut(s) 12, 62, 83
CviJI RGCY 4 cut(s) 50, 146, 153, 265
CviKI_1 RGCY 4 cut(s) 50, 146, 153, 265
CviQI GTAC 4 cut(s) 9, 16, 65, 207
DdeI CTNAG 2 cut(s) 19, 201
DpnI GATC 2 cut(s) 60, 290
DpnII GATC 2 cut(s) 58, 288
Eam1104I CTCTTC 1 cut(s) 136
EarI CTCTTC 1 cut(s) 136
FaeI CATG 3 cut(s) 15, 65, 86
FaiI YATR 8 cut(s) 13, 63, 84, 129, 134, 258, 296, 322
FatI CATG 3 cut(s) 11, 61, 82
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
Hin1II CATG 3 cut(s) 15, 65, 86
HindIII AAGCTT 1 cut(s) 151
HphI GGTGA 2 cut(s) 25, 101
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 1 cut(s) 9
HpyAV CCTTC 4 cut(s) 80, 215, 221, 294
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4V TGCA 2 cut(s) 77, 82
HpyF3I CTNAG 2 cut(s) 19, 201
Hsp92II CATG 3 cut(s) 15, 65, 86
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 2 cut(s) 58, 288
LguI GCTCTTC 1 cut(s) 136
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 6 cut(s) 40, 53, 79, 90, 198, 203
LweI GCATC 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 89
MalI GATC 2 cut(s) 60, 290
MboI GATC 2 cut(s) 58, 288
MboII GAAGA 1 cut(s) 153
MluCI AATT 1 cut(s) 243
MnlI CCTC 4 cut(s) 46, 64, 302, 313
MslI CAYNNNNRTG 1 cut(s) 87
NdeII GATC 2 cut(s) 58, 288
NlaIII CATG 3 cut(s) 15, 65, 86
NmuCI GTSAC 1 cut(s) 89
PciSI GCTCTTC 1 cut(s) 136
PkrI GCNGC 1 cut(s) 52
RsaI GTAC 4 cut(s) 10, 17, 66, 208
RsaNI GTAC 4 cut(s) 9, 16, 65, 207
RseI CAYNNNNRTG 1 cut(s) 87
SapI GCTCTTC 1 cut(s) 136
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 2 cut(s) 58, 288
ScaI AGTACT 1 cut(s) 208
SetI ASST 9 cut(s) 38, 75, 91, 120, 148, 155, 168, 267, 305
SfaNI GCATC 1 cut(s) 39
SfcI CTRYAG 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 87
Sse9I AATT 1 cut(s) 243
SsiI CCGC 2 cut(s) 51, 306
TaaI ACNGT 1 cut(s) 250
TaqI TCGA 1 cut(s) 287
TaqII GACCGA 1 cut(s) 181
TasI AATT 1 cut(s) 243
TatI WGTACW 3 cut(s) 8, 64, 206
TauI GCSGC 1 cut(s) 53
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 3 cut(s) 17, 99, 192
TspRI CASTG 1 cut(s) 84
ZrmI AGTACT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.