RLG00000006080

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000504
Physical Location & Seq
Reverse (-)
4164266 .. 4164801
536 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006080

Sequence Viewer

Length: 306 bp
ATGGTAGAGATCAAAGCTTCAGCCGATGAAGTGTACAAGGTCCTCAGCAACCAGCATCACCTCATTCCCGAAGCCGCTTCTGATCATGTACAGGAGGTTGCAGTGCATGAAGGTGACTGGGAAACTACTGGTTCTGTAAAGGTTTGGAAATACACTACAGATGGAAGAGCTGAAAGCTTCAAGGAAAAGGTGGAAATAGATGAAGCAAACAAGTCGCTCACTGAGAATAATGCTTCTCCTCATAACTACCTCCGCTTTGCCGTCAATATGACTCAGGATGTTGATGCACATCTTCTCAAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

102

Amino Acids

11.42

Weight (kDa)

5.02

Isoelectric Point (pI)

20.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 2 - 73 1.7e-24 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 75, 253
AfaI GTAC 2 cut(s) 35, 90
AgsI TTSAA 1 cut(s) 181
AluBI AGCT 3 cut(s) 17, 170, 177
AluI AGCT 3 cut(s) 17, 170, 177
AspS9I GGNCC 1 cut(s) 40
AsuHPI GGTGA 2 cut(s) 50, 125
AvaII GGWCC 1 cut(s) 40
BbvCI CCTCAGC 1 cut(s) 44
BccI CCATC 1 cut(s) 155
BceAI ACGGC 1 cut(s) 245
BcgI CGANNNNNNTGC 2 cut(s) 195, 229
BclI TGATCA 1 cut(s) 82
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 40
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 2 cut(s) 64, 274
BmuI ACTGGG 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 281
BsaBI GATNNNNATC 1 cut(s) 288
Bse1I ACTGG 2 cut(s) 122, 133
Bse8I GATNNNNATC 1 cut(s) 288
BseGI GGATG 1 cut(s) 283
BseJI GATNNNNATC 1 cut(s) 288
BseMII CTCAG 3 cut(s) 58, 213, 287
BseNI ACTGG 2 cut(s) 122, 133
BseRI GAGGAG 1 cut(s) 228
Bsp1407I TGTACA 2 cut(s) 33, 88
Bsp143I GATC 2 cut(s) 9, 82
BspACI CCGC 2 cut(s) 75, 253
BspCNI CTCAG 3 cut(s) 57, 214, 286
BspQI GCTCTTC 1 cut(s) 160
BsrGI TGTACA 2 cut(s) 33, 88
BsrI ACTGG 2 cut(s) 122, 133
BssMI GATC 2 cut(s) 9, 82
Bst6I CTCTTC 1 cut(s) 160
BstAUI TGTACA 2 cut(s) 33, 88
BstDEI CTNAG 3 cut(s) 44, 222, 273
BstF5I GGATG 1 cut(s) 283
BstKTI GATC 2 cut(s) 12, 85
BstMBI GATC 2 cut(s) 9, 82
BstSFI CTRYAG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 2 cut(s) 108, 219
Cfr13I GGNCC 1 cut(s) 40
Csp6I GTAC 2 cut(s) 34, 89
CviAII CATG 2 cut(s) 86, 107
CviJI RGCY 5 cut(s) 17, 23, 74, 170, 177
CviKI_1 RGCY 5 cut(s) 17, 23, 74, 170, 177
CviQI GTAC 2 cut(s) 34, 89
DdeI CTNAG 3 cut(s) 44, 222, 273
DpnI GATC 2 cut(s) 11, 84
DpnII GATC 2 cut(s) 9, 82
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 40
FaeI CATG 2 cut(s) 89, 110
FaiI YATR 4 cut(s) 87, 108, 243, 269
FatI CATG 2 cut(s) 85, 106
FbaI TGATCA 1 cut(s) 82
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
Hin1II CATG 2 cut(s) 89, 110
HindIII AAGCTT 2 cut(s) 15, 175
HinfI GANTC 1 cut(s) 271
HphI GGTGA 2 cut(s) 50, 125
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 2 cut(s) 68, 275
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 104
HpyCH4V TGCA 3 cut(s) 101, 106, 287
HpyF3I CTNAG 3 cut(s) 44, 222, 273
Hsp92II CATG 2 cut(s) 89, 110
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 2 cut(s) 9, 82
LguI GCTCTTC 1 cut(s) 160
LpnPI CCDG 5 cut(s) 65, 77, 103, 114, 260
LweI GCATC 2 cut(s) 64, 274
MaeIII GTNAC 1 cut(s) 113
MalI GATC 2 cut(s) 11, 84
MboI GATC 2 cut(s) 9, 82
MboII GAAGA 2 cut(s) 177, 284
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 5 cut(s) 53, 71, 88, 249, 260
MslI CAYNNNNRTG 1 cut(s) 111
NdeII GATC 2 cut(s) 9, 82
NlaIII CATG 2 cut(s) 89, 110
NmuCI GTSAC 1 cut(s) 113
PciSI GCTCTTC 1 cut(s) 160
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PpuMI RGGWCCY 1 cut(s) 40
Psp5II RGGWCCY 1 cut(s) 40
PspPI GGNCC 1 cut(s) 40
PspPPI RGGWCCY 1 cut(s) 40
RsaI GTAC 2 cut(s) 35, 90
RsaNI GTAC 2 cut(s) 34, 89
RseI CAYNNNNRTG 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 160
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 9, 82
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 1 cut(s) 265
SfaNI GCATC 2 cut(s) 64, 274
SfcI CTRYAG 1 cut(s) 156
SinI GGWCC 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SsiI CCGC 2 cut(s) 75, 253
TatI WGTACW 2 cut(s) 33, 88
TauI GCSGC 1 cut(s) 77
TscAI CASTG 2 cut(s) 108, 226
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 3 cut(s) 42, 123, 216
TspRI CASTG 2 cut(s) 108, 226
VpaK11BI GGWCC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.