Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000504

Physical Location & Seq

Genomic Coordinates Forward (+)

1363529 .. 1364381

Gene Structure 853 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g02170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGTTCTGCATGGTAAAATTGGGACCGAAATAGAAATTAAGGCACCAGCTGACAAGTTGTACAACATGTTCAAGAGCGCCCACCTCATCCCAAACATTTCTAATACCCATATCAAAGGAGTTGATGTGCATGAAGGAGACTGGGAAACACACGGCTCTATTAAGATTTGGAAATATGAATTAGGGGACCATGTCGGGATATTCAAGGAACAGGTGGAGCTAGACGATGAGAACAAGGCCGCAACTCTGAAAGGATTGGAAGGAGAAGTGTTCAAGTATTATAAGAGCTTCAAGGGTGTCTATAAATTCACTCAAAAAGATGAAAGCACCTGCATTGCCAACCTGTGGATCGAATACGAGAAACTGAATGAGAATGTTGAAGCTCCAGATAGATATGTCGGTTTGATGGTTAAACTCGTCCAGGATGATCTTGACGCTCACTTTCTGGGAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010228 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0080184

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

152

Amino Acids

17.24

Weight (kDa)

5.33

Isoelectric Point (pI)

12.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	4 - 149	1e-45	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca	FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica	MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica	Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis	pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis	RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata	RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora	Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii	Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa	Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha	Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana	Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
AarI	CACCTGC	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	338
AccB1I	GGYRCC	1 cut(s)	43
AccB7I	CCANNNNNTGG	1 cut(s)	345
AciI	CCGC	1 cut(s)	240
AclWI	GGATC	1 cut(s)	356
AcsI	RAATTY	1 cut(s)	305
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	345
AflIII	ACRYGT	1 cut(s)	66
AgsI	TTSAA	5 cut(s)	73, 205, 274, 292, 380
AjnI	CCWGG	1 cut(s)	420
AluBI	AGCT	4 cut(s)	50, 220, 288, 383
AluI	AGCT	4 cut(s)	50, 220, 288, 383
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	356
AoxI	GGCC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	2 cut(s)	24, 187
AvaII	GGWCC	2 cut(s)	24, 187
BanI	GGYRCC	1 cut(s)	43
BccI	CCATC	1 cut(s)	400
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	422
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	221
BfoI	RGCGCY	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	338
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	422
Bme18I	GGWCC	2 cut(s)	24, 187
BmgT120I	GGNCC	2 cut(s)	24, 187
BmiI	GGNNCC	3 cut(s)	25, 45, 188
BmrFI	CCNGG	1 cut(s)	422
BmrI	ACTGGG	1 cut(s)	151
BmuI	ACTGGG	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	422
BseGI	GGATG	2 cut(s)	87, 430
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMI	GCAATG	1 cut(s)	333
BseNI	ACTGG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	43
BslFI	GGGAC	2 cut(s)	37, 200
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	1 cut(s)	132
BsmFI	GGGAC	2 cut(s)	37, 200
BsnI	GGCC	1 cut(s)	239
Bsp1407I	TGTACA	1 cut(s)	60
Bsp143I	GATC	2 cut(s)	348, 427
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	1 cut(s)	239
BspLI	GGNNCC	3 cut(s)	25, 45, 188
BspMI	ACCTGC	1 cut(s)	338
BspPI	GGATC	1 cut(s)	356
BspT107I	GGYRCC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	333
BsrGI	TGTACA	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	146
BssMI	GATC	2 cut(s)	348, 427
Bst2UI	CCWGG	1 cut(s)	422
BstAUI	TGTACA	1 cut(s)	60
BstF5I	GGATG	2 cut(s)	87, 430
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	2 cut(s)	351, 430
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	2 cut(s)	348, 427
BstNI	CCWGG	1 cut(s)	422
BstNSI	RCATGY	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	420
BsuRI	GGCC	1 cut(s)	239
BtsCI	GGATG	2 cut(s)	87, 430
BveI	ACCTGC	1 cut(s)	338
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	24, 187
CseI	GACGC	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	4 cut(s)	11, 67, 131, 191
CviJI	RGCY	6 cut(s)	50, 156, 220, 239, 288, 383
CviKI_1	RGCY	6 cut(s)	50, 156, 220, 239, 288, 383
CviQI	GTAC	1 cut(s)	61
DpnI	GATC	2 cut(s)	350, 429
DpnII	GATC	2 cut(s)	348, 427
Eco47I	GGWCC	2 cut(s)	24, 187
EcoRII	CCWGG	1 cut(s)	420
FaeI	CATG	4 cut(s)	14, 70, 134, 194
FaqI	GGGAC	2 cut(s)	37, 200
FatI	CATG	4 cut(s)	10, 66, 130, 190
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	2 cut(s)	74, 437
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	369
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	239
HgaI	GACGC	1 cut(s)	443
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	4 cut(s)	14, 70, 134, 194
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	4 cut(s)	73, 196, 386, 431
HpyAV	CCTTC	2 cut(s)	128, 254
HpyCH4V	TGCA	3 cut(s)	10, 130, 333
Hsp92II	CATG	4 cut(s)	14, 70, 134, 194
HspAI	GCGC	1 cut(s)	78
Kzo9I	GATC	2 cut(s)	348, 427
LmnI	GCTCC	3 cut(s)	217, 388, 449
LpnPI	CCDG	9 cut(s)	60, 127, 197, 343, 356, 399, 407, 431, 434
MaeI	CTAG	1 cut(s)	221
MalI	GATC	2 cut(s)	350, 429
MboI	GATC	2 cut(s)	348, 427
MluCI	AATT	4 cut(s)	18, 36, 179, 305
MnlI	CCTC	1 cut(s)	95
MseI	TTAA	3 cut(s)	39, 162, 411
MspA1I	CMGCKG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	422
MvaI	CCWGG	1 cut(s)	422
NdeII	GATC	2 cut(s)	348, 427
NlaIII	CATG	4 cut(s)	14, 70, 134, 194
NlaIV	GGNNCC	3 cut(s)	25, 45, 188
NspI	RCATGY	1 cut(s)	70
PaqCI	CACCTGC	1 cut(s)	338
PciI	ACATGT	1 cut(s)	66
PflFI	GACNNNGTC	1 cut(s)	191
PflMI	CCANNNNNTGG	1 cut(s)	345
PfoI	TCCNGGA	1 cut(s)	420
PkrI	GCNGC	1 cut(s)	241
PscI	ACATGT	1 cut(s)	66
PsiI	TTATAA	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	420
PspN4I	GGNNCC	3 cut(s)	25, 45, 188
PspPI	GGNCC	2 cut(s)	24, 187
PsrI	GAACNNNNNNTAC	2 cut(s)	53, 85
PsyI	GACNNNGTC	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SaqAI	TTAA	3 cut(s)	39, 162, 411
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	2 cut(s)	348, 427
Sau96I	GGNCC	2 cut(s)	24, 187
ScrFI	CCNGG	1 cut(s)	422
SetI	ASST	8 cut(s)	52, 87, 216, 222, 290, 332, 345, 385
SinI	GGWCC	2 cut(s)	24, 187
Sse9I	AATT	4 cut(s)	18, 36, 179, 305
SsiI	CCGC	1 cut(s)	240
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	420
TaqI	TCGA	1 cut(s)	351
TaqII	GACCGA	1 cut(s)	41
TasI	AATT	4 cut(s)	18, 36, 179, 305
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	1 cut(s)	242
Tru1I	TTAA	3 cut(s)	39, 162, 411
Tru9I	TTAA	3 cut(s)	39, 162, 411
TspDTI	ATGAA	3 cut(s)	147, 192, 336
Tth111I	GACNNNGTC	1 cut(s)	191
Van91I	CCANNNNNTGG	1 cut(s)	345
VpaK11BI	GGWCC	2 cut(s)	24, 187
XapI	RAATTY	1 cut(s)	305
XceI	RCATGY	1 cut(s)	70
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.