Rorug04G0335300

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000504
Physical Location & Seq
Reverse (-)
50933188 .. 50934531
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0335300.1

Sequence Viewer

Length: 1344 bp
ATGATCATGAAGGTTGAGGTTGAGGTTGTCTCCAGAGAGCTTATCAGACCATCTTCTCCAACTCCTGACCACCTCCACAGATATCAACTCTCCTTTCTTGACCAGATATCTCCCCCAGTCTTTAGTCCTTTGGTTCTATTTTATTCATCATCCGAGGCTGATACAAATTTCGACATTGCTGATCTATCGAATCGGCTAAAGAAATCCCTCTCCGATGTCTTGGTCCAATTCTACCCACTCGCTGGACGAGCAAATGACAACATGTTCATAGACTGCAACGACAAGGGCATACCCTTCTTGGAAACTCGAGTTAACTGCCAACTATCTGATGTTATCCAAAACCCAGTTCCCAGTGAACTCAACAAGTTGGTTCCATTTCAACTAGACGAAGTTGCTGATCTAGCCCTTGGTGTCCAACTAAATGTCTTTGACTGTGGTGGAGTTGCAATTGGTGCTTGCATTTCTCACAAGATTGCAGATGCTTTATCGTTTTTCACGTTCATCAAAACTTGGGCAGCCACTGCTAGAAAAGATCATTATCATCCGACAGATGATCATGCAGTTATGTCTCCACAGTTTGTATCAGCCACACTGTTCCCACCAAGGAACATATCCGGGTTTAATCCACGTGTTGGGATCACAAAAGAGAATATCGTAACAAAGAGGTTTGTGTTTGATGCTTCCAAGATAGATTCTCTTAAATCAAAATATGGTGTTAATGATAATGATCATGAGCATGAGCAGAGCCTAGAAAGTTACCAAAGACCGCCATCTCGTGTGGAGGCTCTATCTGCTTTCATATGGAGTCGCTATGTGGCTGCAACCGGAGTTGGGTCTGAAGCACCTGAGAGGGTCTATGCCATTGTTCATGCTGTGAACCTCAGGACAAGGTTTGATCCACCACTTCCAGAATGCTCTTTCGGGAATCTCTACCGAATTGCAGTTACGGTTCCACGTCTGGATACAGGGGAGGAGTGCTATGGTCTTGTGAGGCAGGTCAGAGAGCAAGTGAGTCATATTGACAAGGATTATGTGAAGAAATTGCAAGAGGGCAGTGAACACTTGAGTTTCATCAAACAAAGCTCCGAGAATTTCTACAAGGGAGAGATGGTTACACTGAGCTTCACAAGTTTGTGCAGATTTCCTCTGTATGAAGCTGATTTTGGATGGGGAAAGCCTACTTGGGTCGGCTCTCCTGCCCTGACTTTCAATAATTTGGTTGTTTTTATAGACACTAAATCTGGGGGTGGAATAGAAGCATACATTAACATGAAGGAAGTAGAGTTGGCTAAAATTGAATCTGACAAAGAGTTCATTTCATTTGTTTCAAGTGAGTCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

447

Amino Acids

50.15

Weight (kDa)

5.46

Isoelectric Point (pI)

42.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 438 2.2e-80 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 985
AccB7I CCANNNNNTGG 2 cut(s) 242, 632
AciI CCGC 1 cut(s) 767
AclWI GGATC 2 cut(s) 644, 890
AcsI RAATTY 2 cut(s) 166, 1090
AcuI CTGAAG 1 cut(s) 858
AcvI CACGTG 1 cut(s) 629
AfiI CCNNNNNNNGG 3 cut(s) 242, 632, 831
AflIII ACRYGT 2 cut(s) 261, 628
AgsI TTSAA 4 cut(s) 380, 1210, 1298, 1329
AjiI CACGTC 1 cut(s) 956
AjuI GAANNNNNNNTTGG 6 cut(s) 330, 362, 1146, 1165, 1178, 1197
AluBI AGCT 4 cut(s) 40, 1083, 1122, 1157
AluI AGCT 4 cut(s) 40, 1083, 1122, 1157
Alw26I GTCTC 2 cut(s) 34, 573
AlwI GGATC 2 cut(s) 644, 890
AlwNI CAGNNNCTG 1 cut(s) 521
Ama87I CYCGRG 1 cut(s) 306
ApeKI GCWGC 2 cut(s) 515, 818
ApoI RAATTY 2 cut(s) 166, 1090
AspS9I GGNCC 1 cut(s) 223
AsuC2I CCSGG 1 cut(s) 616
AvaI CYCGRG 1 cut(s) 306
AvaII GGWCC 1 cut(s) 223
AxyI CCTNAGG 1 cut(s) 881
BauI CACGAG 1 cut(s) 774
BbrPI CACGTG 1 cut(s) 629
BbvI GCAGC 2 cut(s) 527, 805
BccI CCATC 4 cut(s) 58, 778, 1102, 1161
BcgI CGANNNNNNTGC 2 cut(s) 297, 331
BciVI GTATCC 1 cut(s) 955
BclI TGATCA 3 cut(s) 3, 553, 727
BcnI CCSGG 1 cut(s) 616
BcoDI GTCTC 2 cut(s) 34, 573
BfaI CTAG 4 cut(s) 383, 401, 525, 749
BfuAI ACCTGC 1 cut(s) 985
BfuI GTATCC 1 cut(s) 955
BisI GCNGC 2 cut(s) 516, 819
BlsI GCNGC 2 cut(s) 517, 820
Bme1390I CCNGG 1 cut(s) 616
Bme18I GGWCC 1 cut(s) 223
BmeT110I CYCGRG 1 cut(s) 306
BmgBI CACGTC 1 cut(s) 956
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 2 cut(s) 372, 951
BmrFI CCNGG 1 cut(s) 616
BmrI ACTGGG 3 cut(s) 110, 338, 345
BmsI GCATC 2 cut(s) 469, 667
BmuI ACTGGG 3 cut(s) 110, 338, 345
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BpmI CTGGAG 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 1084
BpuMI CCSGG 1 cut(s) 616
BsaAI YACGTR 1 cut(s) 629
BsaBI GATNNNNATC 2 cut(s) 537, 726
BsaJI CCNNGG 3 cut(s) 153, 406, 602
BsaWI WCCGGW 1 cut(s) 824
BsaXI ACNNNNNCTCC 2 cut(s) 1095, 1125
Bsc4I CCNNNNNNNGG 3 cut(s) 242, 632, 831
Bse1I ACTGG 3 cut(s) 116, 344, 351
Bse21I CCTNAGG 1 cut(s) 881
Bse3DI GCAATG 1 cut(s) 174
Bse8I GATNNNNATC 2 cut(s) 537, 726
BseDI CCNNGG 3 cut(s) 153, 406, 602
BseGI GGATG 3 cut(s) 149, 541, 1172
BseJI GATNNNNATC 2 cut(s) 537, 726
BseLI CCNNNNNNNGG 3 cut(s) 242, 632, 831
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 3 cut(s) 837, 895, 1109
BseNI ACTGG 3 cut(s) 116, 344, 351
BseRI GAGGAG 1 cut(s) 986
BseXI GCAGC 2 cut(s) 527, 805
BsgI GTGCAG 1 cut(s) 1156
BsiHKCI CYCGRG 1 cut(s) 306
BsiSI CCGG 2 cut(s) 615, 825
BslI CCNNNNNNNGG 3 cut(s) 242, 632, 831
BsmAI GTCTC 2 cut(s) 34, 573
BsmI GAATGC 1 cut(s) 917
BsoBI CYCGRG 1 cut(s) 306
Bsp143I GATC 8 cut(s) 3, 181, 397, 532, 553, 636, 727, 895
BspACI CCGC 1 cut(s) 767
BspCNI CTCAG 3 cut(s) 838, 894, 1110
BspHI TCATGA 2 cut(s) 6, 730
BspLI GGNNCC 2 cut(s) 372, 951
BspMI ACCTGC 1 cut(s) 985
BspPI GGATC 2 cut(s) 644, 890
BsrDI GCAATG 1 cut(s) 174
BsrI ACTGG 3 cut(s) 116, 344, 351
BssECI CCNNGG 3 cut(s) 153, 406, 602
BssMI GATC 8 cut(s) 3, 181, 397, 532, 553, 636, 727, 895
BssSI CACGAG 1 cut(s) 774
BssT1I CCWWGG 2 cut(s) 406, 602
Bst2BI CACGAG 1 cut(s) 774
Bst4CI ACNGT 4 cut(s) 434, 576, 594, 949
BstAPI GCANNNNNTGC 2 cut(s) 452, 521
BstBAI YACGTR 1 cut(s) 629
BstC8I GCNNGC 1 cut(s) 457
BstDEI CTNAG 3 cut(s) 846, 881, 1118
BstF5I GGATG 3 cut(s) 149, 541, 1172
BstKTI GATC 8 cut(s) 6, 184, 400, 535, 556, 639, 730, 898
BstMAI GTCTC 2 cut(s) 34, 573
BstMBI GATC 8 cut(s) 3, 181, 397, 532, 553, 636, 727, 895
BstMWI GCNNNNNNNGC 5 cut(s) 248, 401, 452, 521, 791
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 1 cut(s) 614
BstV1I GCAGC 2 cut(s) 527, 805
Bsu36I CCTNAGG 1 cut(s) 881
BsuI GTATCC 1 cut(s) 955
BtrI CACGTC 1 cut(s) 956
BtsCI GGATG 3 cut(s) 149, 541, 1172
BtsI GCAGTG 2 cut(s) 519, 1060
BtsIMutI CAGTG 5 cut(s) 358, 519, 590, 1060, 1115
BveI ACCTGC 1 cut(s) 985
Cac8I GCNNGC 1 cut(s) 457
CaiI CAGNNNCTG 1 cut(s) 521
CciI TCATGA 2 cut(s) 6, 730
Cfr13I GGNCC 1 cut(s) 223
CviAII CATG 7 cut(s) 7, 262, 557, 731, 737, 869, 1270
DdeI CTNAG 3 cut(s) 846, 881, 1118
DpnI GATC 8 cut(s) 5, 183, 399, 534, 555, 638, 729, 897
DpnII GATC 8 cut(s) 3, 181, 397, 532, 553, 636, 727, 895
Eco130I CCWWGG 2 cut(s) 406, 602
Eco32I GATATC 2 cut(s) 83, 108
Eco47I GGWCC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 858
Eco72I CACGTG 1 cut(s) 629
Eco81I CCTNAGG 1 cut(s) 881
Eco88I CYCGRG 1 cut(s) 306
EcoRV GATATC 2 cut(s) 83, 108
EcoT14I CCWWGG 2 cut(s) 406, 602
ErhI CCWWGG 2 cut(s) 406, 602
FaeI CATG 7 cut(s) 10, 265, 560, 734, 740, 872, 1273
FatI CATG 7 cut(s) 6, 261, 556, 730, 736, 868, 1269
FauNDI CATATG 1 cut(s) 800
FbaI TGATCA 3 cut(s) 3, 553, 727
Fnu4HI GCNGC 2 cut(s) 516, 819
FokI GGATG 3 cut(s) 136, 528, 1179
Fsp4HI GCNGC 2 cut(s) 516, 819
FspBI CTAG 4 cut(s) 383, 401, 525, 749
GluI GCNGC 2 cut(s) 516, 819
GsuI CTGGAG 1 cut(s) 16
HapII CCGG 2 cut(s) 615, 825
Hin1II CATG 7 cut(s) 10, 265, 560, 734, 740, 872, 1273
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 7 cut(s) 190, 692, 805, 925, 1012, 1298, 1334
HpaI GTTAAC 1 cut(s) 313
HpaII CCGG 2 cut(s) 615, 825
Hpy166II GTNNAC 4 cut(s) 313, 356, 877, 1058
Hpy188I TCNGA 9 cut(s) 47, 154, 214, 328, 546, 838, 1001, 1087, 1303
Hpy188III TCNNGA 9 cut(s) 7, 33, 65, 98, 731, 883, 908, 922, 959
Hpy8I GTNNAC 4 cut(s) 313, 356, 877, 1058
HpyAV CCTTC 3 cut(s) 4, 304, 1267
HpyCH4III ACNGT 4 cut(s) 434, 576, 594, 949
HpyCH4IV ACGT 3 cut(s) 497, 628, 955
HpyCH4V TGCA 9 cut(s) 276, 446, 459, 476, 560, 821, 941, 1045, 1137
HpyF10VI GCNNNNNNNGC 5 cut(s) 248, 401, 452, 521, 791
HpyF3I CTNAG 3 cut(s) 846, 881, 1118
HpySE526I ACGT 3 cut(s) 497, 628, 955
Hsp92II CATG 7 cut(s) 10, 265, 560, 734, 740, 872, 1273
Ksp22I TGATCA 3 cut(s) 3, 553, 727
KspAI GTTAAC 1 cut(s) 313
Kzo9I GATC 8 cut(s) 3, 181, 397, 532, 553, 636, 727, 895
LmnI GCTCC 1 cut(s) 1088
Lsp1109I GCAGC 2 cut(s) 527, 805
LweI GCATC 2 cut(s) 469, 667
MaeI CTAG 4 cut(s) 383, 401, 525, 749
MaeII ACGT 3 cut(s) 497, 628, 955
MaeIII GTNAC 4 cut(s) 655, 755, 943, 1111
MalI GATC 8 cut(s) 5, 183, 399, 534, 555, 638, 729, 897
MboI GATC 8 cut(s) 3, 181, 397, 532, 553, 636, 727, 895
MboII GAAGA 2 cut(s) 45, 1048
MfeI CAATTG 1 cut(s) 447
MluCI AATT 8 cut(s) 166, 227, 447, 936, 1040, 1090, 1213, 1293
MlyI GAGTC 3 cut(s) 814, 1021, 1343
MmeI TCCRAC 3 cut(s) 83, 439, 569
MseI TTAA 5 cut(s) 312, 621, 699, 717, 1266
MslI CAYNNNNRTG 2 cut(s) 735, 1268
MspI CCGG 2 cut(s) 615, 825
MspR9I CCNGG 1 cut(s) 616
MunI CAATTG 1 cut(s) 447
Mva1269I GAATGC 1 cut(s) 917
MwoI GCNNNNNNNGC 5 cut(s) 248, 401, 452, 521, 791
NciI CCSGG 1 cut(s) 616
NdeI CATATG 1 cut(s) 800
NdeII GATC 8 cut(s) 3, 181, 397, 532, 553, 636, 727, 895
NlaIII CATG 7 cut(s) 10, 265, 560, 734, 740, 872, 1273
NlaIV GGNNCC 2 cut(s) 372, 951
NspI RCATGY 1 cut(s) 265
PaeR7I CTCGAG 1 cut(s) 306
PagI TCATGA 2 cut(s) 6, 730
PciI ACATGT 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 494
PctI GAATGC 1 cut(s) 917
PfeI GAWTC 4 cut(s) 190, 692, 925, 1298
PflMI CCANNNNNTGG 2 cut(s) 242, 632
PkrI GCNGC 2 cut(s) 517, 820
PleI GAGTC 3 cut(s) 813, 1020, 1342
PmaCI CACGTG 1 cut(s) 629
PmlI CACGTG 1 cut(s) 629
PpsI GAGTC 3 cut(s) 813, 1020, 1342
Ppu21I YACGTR 1 cut(s) 629
PscI ACATGT 1 cut(s) 261
PspCI CACGTG 1 cut(s) 629
PspN4I GGNNCC 2 cut(s) 372, 951
PspPI GGNCC 1 cut(s) 223
PspXI VCTCGAGB 1 cut(s) 306
PstNI CAGNNNCTG 1 cut(s) 521
RseI CAYNNNNRTG 2 cut(s) 735, 1268
SaqAI TTAA 5 cut(s) 312, 621, 699, 717, 1266
SatI GCNGC 2 cut(s) 516, 819
Sau3AI GATC 8 cut(s) 3, 181, 397, 532, 553, 636, 727, 895
Sau96I GGNCC 1 cut(s) 223
SchI GAGTC 3 cut(s) 814, 1021, 1343
ScrFI CCNGG 1 cut(s) 616
SfaNI GCATC 2 cut(s) 469, 667
Sfr274I CTCGAG 1 cut(s) 306
SinI GGWCC 1 cut(s) 223
SlaI CTCGAG 1 cut(s) 306
SmiMI CAYNNNNRTG 2 cut(s) 735, 1268
SmlI CTYRAG 2 cut(s) 306, 1063
SmoI CTYRAG 2 cut(s) 306, 1063
Sse9I AATT 8 cut(s) 166, 227, 447, 936, 1040, 1090, 1213, 1293
SsiI CCGC 1 cut(s) 767
SspMI CTAG 4 cut(s) 383, 401, 525, 749
StyD4I CCNGG 1 cut(s) 614
StyI CCWWGG 2 cut(s) 406, 602
TaaI ACNGT 4 cut(s) 434, 576, 594, 949
TaiI ACGT 3 cut(s) 500, 631, 958
TaqI TCGA 3 cut(s) 171, 188, 307
TasI AATT 8 cut(s) 166, 227, 447, 936, 1040, 1090, 1213, 1293
TfiI GAWTC 4 cut(s) 190, 692, 925, 1298
Tru1I TTAA 5 cut(s) 312, 621, 699, 717, 1266
Tru9I TTAA 5 cut(s) 312, 621, 699, 717, 1266
TscAI CASTG 5 cut(s) 358, 526, 597, 1060, 1122
TseI GCWGC 2 cut(s) 515, 818
TspRI CASTG 5 cut(s) 358, 526, 597, 1060, 1122
Van91I CCANNNNNTGG 2 cut(s) 242, 632
VpaK11BI GGWCC 1 cut(s) 223
XapI RAATTY 2 cut(s) 166, 1090
XceI RCATGY 1 cut(s) 265
XhoI CTCGAG 1 cut(s) 306
XspI CTAG 4 cut(s) 383, 401, 525, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.