Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000504

Physical Location & Seq

Genomic Coordinates Reverse (-)

5152263 .. 5153104

Gene Structure 842 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G14930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCGATGTCAGGAAAATACGTGGCGGAAGTACCGCTGAAAGGGTCGGCGGAGAAACACTACAGGCGATGGAGGAGCCAAAACAATCTCTTCCCGGACGCCATCGGCCACCATGTCCAAGGCGTCACCGTCCACGATGGCGACTGGGACTCCCACGGCTCCATCAAATCCTGGAACTACACACTTGATGGGAAGCCGGAAGTCATCAAGGAGAAAAGAGAGATAGACGACGAGAAGATGGCGTTGACGTTCAGAGGACTAGAGGGTCATGTGATGGAGAAGTACAAGAAGTATGAGGTTATCTTACAGTTCATTCCCAAGTCGAACGAAGGCTGCGTCTGCAAAGTCACTCTGATATGGGAGAATCGCAACGAAGACTCCCCCGAACCCATCAACTACATGAAGTTTGTCAAGAGCTTAGTTGCTGATATGGATGACCACATCCTCAAGGGCCAGAACAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010228 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0080184

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

155

Amino Acids

17.89

Weight (kDa)

6.65

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	2 - 150	2.3e-69	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca	FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica	MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica	Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis	pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis	RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata	RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora	Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii	Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa	Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha	Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana	Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	264
AciI	CCGC	3 cut(s)	26, 35, 50
AcoI	YGGCCR	1 cut(s)	106
AcyI	GRCGYC	2 cut(s)	99, 123
AfaI	GTAC	2 cut(s)	33, 284
AfiI	CCNNNNNNNGG	1 cut(s)	41
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	2 cut(s)	417, 464
AluI	AGCT	2 cut(s)	417, 464
AoxI	GGCC	2 cut(s)	106, 451
ApeKI	GCWGC	1 cut(s)	333
ArsI	GACNNNNNNTTYG	2 cut(s)	321, 353
AspS9I	GGNCC	1 cut(s)	451
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	381
BbvI	GCAGC	1 cut(s)	320
BccI	CCATC	8 cut(s)	63, 110, 131, 170, 182, 232, 268, 398
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	95
BfaI	CTAG	1 cut(s)	260
BfmI	CTRYAG	1 cut(s)	61
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
Bme1390I	CCNGG	2 cut(s)	95, 172
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	2 cut(s)	77, 160
BmrFI	CCNGG	2 cut(s)	95, 172
BmrI	ACTGGG	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	95
BsaAI	YACGTR	1 cut(s)	22
BsaHI	GRCGYC	2 cut(s)	99, 123
BsaJI	CCNNGG	2 cut(s)	118, 154
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 362, 392
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	2 cut(s)	118, 154
BseGI	GGATG	2 cut(s)	439, 441
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	320
BshFI	GGCC	2 cut(s)	108, 453
BsiSI	CCGG	2 cut(s)	95, 197
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	2 cut(s)	108, 453
BspACI	CCGC	3 cut(s)	26, 35, 50
BspANI	GGCC	2 cut(s)	108, 453
BspLI	GGNNCC	2 cut(s)	77, 160
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	2 cut(s)	118, 154
BssNI	GRCGYC	2 cut(s)	99, 123
BssT1I	CCWWGG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	2 cut(s)	130, 309
Bst6I	CTCTTC	1 cut(s)	95
BstACI	GRCGYC	2 cut(s)	99, 123
BstBAI	YACGTR	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	418
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	2 cut(s)	439, 441
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstNI	CCWGG	1 cut(s)	172
BstSCI	CCNGG	2 cut(s)	93, 170
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	320
BstV2I	GAAGAC	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	108, 453
BtgI	CCRYGG	1 cut(s)	154
BtgZI	GCGATG	2 cut(s)	20, 82
BtsCI	GGATG	2 cut(s)	439, 441
Cfr13I	GGNCC	1 cut(s)	451
CseI	GACGC	3 cut(s)	107, 112, 325
Csp6I	GTAC	2 cut(s)	32, 283
CviAII	CATG	3 cut(s)	113, 269, 400
CviJI	RGCY	8 cut(s)	78, 108, 159, 196, 333, 417, 453, 464
CviKI_1	RGCY	8 cut(s)	78, 108, 159, 196, 333, 417, 453, 464
CviQI	GTAC	2 cut(s)	32, 283
DdeI	CTNAG	1 cut(s)	418
DrdI	GACNNNNNNGTC	1 cut(s)	264
DseDI	GACNNNNNNGTC	1 cut(s)	264
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
EciI	GGCGGA	2 cut(s)	41, 65
Eco130I	CCWWGG	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	3 cut(s)	116, 272, 403
FaiI	YATR	6 cut(s)	114, 270, 294, 358, 401, 431
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	3 cut(s)	112, 268, 399
Fnu4HI	GCNGC	1 cut(s)	334
FokI	GGATG	2 cut(s)	428, 446
Fsp4HI	GCNGC	1 cut(s)	334
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	1 cut(s)	334
HaeIII	GGCC	2 cut(s)	108, 453
HapII	CCGG	2 cut(s)	95, 197
HgaI	GACGC	3 cut(s)	107, 112, 325
Hin1I	GRCGYC	2 cut(s)	99, 123
Hin1II	CATG	3 cut(s)	116, 272, 403
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HindIII	AAGCTT	1 cut(s)	462
HinfI	GANTC	3 cut(s)	149, 364, 377
HpaII	CCGG	2 cut(s)	95, 197
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	133, 246
Hpy188I	TCNGA	2 cut(s)	254, 354
Hpy188III	TCNNGA	2 cut(s)	12, 412
Hpy8I	GTNNAC	2 cut(s)	133, 246
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	2 cut(s)	130, 309
HpyCH4IV	ACGT	2 cut(s)	21, 248
HpyCH4V	TGCA	1 cut(s)	342
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
HpyF3I	CTNAG	1 cut(s)	418
HpySE526I	ACGT	2 cut(s)	21, 248
Hsp92I	GRCGYC	2 cut(s)	99, 123
Hsp92II	CATG	3 cut(s)	116, 272, 403
LmnI	GCTCC	2 cut(s)	75, 164
LpnPI	CCDG	6 cut(s)	49, 108, 130, 157, 184, 210
Lsp1109I	GCAGC	1 cut(s)	320
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	2 cut(s)	21, 248
MaeIII	GTNAC	2 cut(s)	124, 346
MboII	GAAGA	3 cut(s)	82, 247, 386
MlyI	GAGTC	2 cut(s)	143, 371
MnlI	CCTC	5 cut(s)	66, 248, 256, 289, 455
MseI	TTAA	1 cut(s)	466
MspA1I	CMGCKG	1 cut(s)	37
MspI	CCGG	2 cut(s)	95, 197
MspR9I	CCNGG	2 cut(s)	95, 172
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	339
NciI	CCSGG	1 cut(s)	95
NlaIII	CATG	3 cut(s)	116, 272, 403
NlaIV	GGNNCC	2 cut(s)	77, 160
NmuCI	GTSAC	2 cut(s)	124, 346
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	364
PfoI	TCCNGGA	2 cut(s)	93, 170
PkrI	GCNGC	1 cut(s)	335
PleI	GAGTC	2 cut(s)	143, 371
PpsI	GAGTC	2 cut(s)	143, 371
Ppu21I	YACGTR	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	2 cut(s)	77, 160
PspPI	GGNCC	1 cut(s)	451
RsaI	GTAC	2 cut(s)	33, 284
RsaNI	GTAC	2 cut(s)	32, 283
SaqAI	TTAA	1 cut(s)	466
SatI	GCNGC	1 cut(s)	334
Sau96I	GGNCC	1 cut(s)	451
SchI	GAGTC	2 cut(s)	143, 371
ScrFI	CCNGG	2 cut(s)	95, 172
SetI	ASST	5 cut(s)	24, 251, 300, 419, 466
SfcI	CTRYAG	1 cut(s)	61
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
SsiI	CCGC	3 cut(s)	26, 35, 50
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	93, 170
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	2 cut(s)	130, 309
TaiI	ACGT	2 cut(s)	24, 251
TaqI	TCGA	1 cut(s)	323
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	1 cut(s)	466
Tru9I	TTAA	1 cut(s)	466
TseFI	GTSAC	2 cut(s)	124, 346
TseI	GCWGC	1 cut(s)	333
Tsp45I	GTSAC	2 cut(s)	124, 346
TspDTI	ATGAA	2 cut(s)	301, 416
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.