Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000504

Physical Location & Seq

Genomic Coordinates Forward (+)

11051999 .. 11053295

Gene Structure 1297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G30990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCGATGTCGGGAACATACATGACGGACGTGCCTCTGAATGGATCGGCCGAGAAACACTACAAGTTGTGGAGTAGCGAGACCCATCGCATCCCTGACACTATCGGCCACCTCATCCAAGGTGTCATCCTCCACGAGGGCGATTGGGACTCTCACGGCTCCATCAAGACATGGAAGTACAATCTTGATGGGAAGGAGGAAGAGTTTAAGGAGAGAACAGAGATAGACGAAGAGAAGATGGCGGTGACGATGACTGCGCTCGATGGTCAAGTCATGGAGGAGCTTAAGGTGTATATCCCAAATCTACAATTCATCCCCGAGTCCCAAAATGCTTGTGTCTGCAAAGTTAGTGTGAAGTGGGAGAAACGCACCGAAGACTCAGAACCCGCCAAGTTTTATAAGTTTCTCGAGAAGATGATTGCTGATTCGGATGACCACATTCTCCATAACCAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010228 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0080184

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

152

Amino Acids

17.59

Weight (kDa)

4.98

Isoelectric Point (pI)

58.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	2 - 150	2.4e-60	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca	FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica	MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica	Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis	pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis	RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata	RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora	Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii	Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa	Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha	Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana	Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	399
AciI	CCGC	2 cut(s)	242, 387
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	2 cut(s)	48, 106
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	3 cut(s)	41, 136, 451
AflII	CTTAAG	1 cut(s)	284
AjiI	CACGTC	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	450
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	52
Ama87I	CYCGRG	2 cut(s)	317, 407
AoxI	GGCC	2 cut(s)	48, 106
AspLEI	GCGC	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	256
AvaI	CYCGRG	2 cut(s)	317, 407
BauI	CACGAG	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	381
BccI	CCATC	5 cut(s)	93, 170, 182, 232, 257
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	452
BcoDI	GTCTC	1 cut(s)	74
BfrI	CTTAAG	1 cut(s)	284
Bme1390I	CCNGG	1 cut(s)	452
BmeT110I	CYCGRG	2 cut(s)	317, 407
BmgBI	CACGTC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	1 cut(s)	452
BmsI	GCATC	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	381
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 136, 451
BseBI	CCWGG	1 cut(s)	452
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	5 cut(s)	90, 114, 126, 312, 436
BseLI	CCNNNNNNNGG	3 cut(s)	41, 136, 451
BseMII	CTCAG	1 cut(s)	393
BseRI	GAGGAG	1 cut(s)	293
BseX3I	CGGCCG	1 cut(s)	48
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	50, 108
BsiEI	CGRYCG	1 cut(s)	51
BsiHKCI	CYCGRG	2 cut(s)	317, 407
BslFI	GGGAC	2 cut(s)	161, 307
BslI	CCNNNNNNNGG	3 cut(s)	41, 136, 451
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	2 cut(s)	161, 307
BsnI	GGCC	2 cut(s)	50, 108
Bso31I	GGTCTC	1 cut(s)	74
BsoBI	CYCGRG	2 cut(s)	317, 407
Bsp143I	GATC	1 cut(s)	44
BspACI	CCGC	2 cut(s)	242, 387
BspANI	GGCC	2 cut(s)	50, 108
BspCNI	CTCAG	1 cut(s)	392
BspLI	GGNNCC	1 cut(s)	160
BspPI	GGATC	1 cut(s)	52
BspTI	CTTAAG	1 cut(s)	284
BspTNI	GGTCTC	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	1 cut(s)	44
BssSI	CACGAG	1 cut(s)	134
BssT1I	CCWWGG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	134
Bst2UI	CCWGG	1 cut(s)	452
Bst6I	CTCTTC	2 cut(s)	195, 225
BstAFI	CTTAAG	1 cut(s)	284
BstDEI	CTNAG	1 cut(s)	379
BstENI	CCTNNNNNAGG	1 cut(s)	134
BstF5I	GGATG	5 cut(s)	90, 114, 126, 312, 436
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	1 cut(s)	47
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	44
BstMCI	CGRYCG	1 cut(s)	51
BstNI	CCWGG	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	450
BstV2I	GAAGAC	1 cut(s)	381
BstZI	CGGCCG	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	50, 108
BtgZI	GCGATG	2 cut(s)	20, 71
BtrI	CACGTC	1 cut(s)	31
BtsCI	GGATG	5 cut(s)	90, 114, 126, 312, 436
CfoI	GCGC	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	3 cut(s)	22, 171, 274
CviJI	RGCY	4 cut(s)	50, 108, 159, 283
CviKI_1	RGCY	4 cut(s)	50, 108, 159, 283
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	379
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
EaeI	YGGCCR	2 cut(s)	48, 106
EagI	CGGCCG	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	195, 225
EarI	CTCTTC	2 cut(s)	195, 225
EclXI	CGGCCG	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	74
Eco52I	CGGCCG	1 cut(s)	48
Eco88I	CYCGRG	2 cut(s)	317, 407
EcoNI	CCTNNNNNAGG	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	450
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	3 cut(s)	25, 174, 277
FaiI	YATR	7 cut(s)	19, 23, 172, 275, 294, 399, 447
FaqI	GGGAC	2 cut(s)	161, 307
FatI	CATG	3 cut(s)	21, 170, 273
FauI	CCCGC	1 cut(s)	394
FokI	GGATG	5 cut(s)	77, 101, 113, 299, 443
GlaI	GCGC	1 cut(s)	258
HaeIII	GGCC	2 cut(s)	50, 108
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	3 cut(s)	25, 174, 277
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HinfI	GANTC	4 cut(s)	149, 320, 377, 425
HphI	GGTGA	1 cut(s)	256
Hpy188I	TCNGA	3 cut(s)	39, 382, 430
Hpy188III	TCNNGA	5 cut(s)	12, 166, 185, 407, 409
HpyAV	CCTTC	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	1 cut(s)	342
HpyF3I	CTNAG	1 cut(s)	379
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	3 cut(s)	25, 174, 277
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	1 cut(s)	44
LmnI	GCTCC	2 cut(s)	164, 280
LpnPI	CCDG	2 cut(s)	108, 437
LweI	GCATC	1 cut(s)	99
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	1 cut(s)	46
MboI	GATC	1 cut(s)	44
MboII	GAAGA	5 cut(s)	212, 242, 247, 386, 424
MluCI	AATT	1 cut(s)	308
MlyI	GAGTC	3 cut(s)	143, 329, 371
MnlI	CCTC	6 cut(s)	45, 122, 130, 140, 190, 271
MseI	TTAA	2 cut(s)	207, 285
MspCI	CTTAAG	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	452
NdeII	GATC	1 cut(s)	44
NlaIII	CATG	3 cut(s)	25, 174, 277
NlaIV	GGNNCC	1 cut(s)	160
NmeAIII	GCCGAG	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	244
PaeR7I	CTCGAG	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	425
PleI	GAGTC	3 cut(s)	143, 328, 371
PpsI	GAGTC	3 cut(s)	143, 328, 371
PsiI	TTATAA	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	450
PspGI	CCWGG	1 cut(s)	450
PspN4I	GGNNCC	1 cut(s)	160
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	207, 285
Sau3AI	GATC	1 cut(s)	44
SchI	GAGTC	3 cut(s)	143, 329, 371
ScrFI	CCNGG	1 cut(s)	452
SetI	ASST	5 cut(s)	33, 114, 124, 285, 291
SfaNI	GCATC	1 cut(s)	99
Sfr274I	CTCGAG	1 cut(s)	407
SlaI	CTCGAG	1 cut(s)	407
SmlI	CTYRAG	2 cut(s)	284, 407
SmoI	CTYRAG	2 cut(s)	284, 407
Sse9I	AATT	1 cut(s)	308
SsiI	CCGC	2 cut(s)	242, 387
StyD4I	CCNGG	1 cut(s)	450
StyI	CCWWGG	1 cut(s)	118
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	2 cut(s)	261, 408
TasI	AATT	1 cut(s)	308
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	2 cut(s)	207, 285
Tru9I	TTAA	2 cut(s)	207, 285
TseFI	GTSAC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	301
TspGWI	ACGGA	1 cut(s)	41
Vha464I	CTTAAG	1 cut(s)	284
XagI	CCTNNNNNAGG	1 cut(s)	134
XhoI	CTCGAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.