FvH4_4g32700

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000504
Physical Location & Seq
Forward (+)
31267038 .. 31270514
3477 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g32700.t3

Sequence Viewer

Length: 459 bp
ATGTCTCTTCAAGGTAAGGTGGAAGCTGAATTTGAAATCACAGCACCTGCTGACAAGTTCTACAACATTTTCAAGATTGAGGCTCACCTAGTCCCAAACACTTCTCAAACTGGCAGTATAACTGGAGTTGCAGTGCATGAAGGAGACTGGGAAACTGACGGGTCTATTAAGATTTGGAACTATGCAATAGAGGGCGAAGTGGGAACATTCAAGGAGAGGGTGGAGTTAGACGAGGTGAACAAGACCATAACTCTGAATGGATTGGAAGGAGATGTGTTTCAGTATTACAAGAGCTTCAAGCCTATCTATCAGTTCACTCAAAAGGATGAGGGCAGCAGCATTGCCAAAGTGTCCATTGAATATGAGAAGCTGAGTGAGGAGGTTGCAGCTCCAGATAAGTACATCCGCTTGATGACTAACATCGTCAAGGATCTTGATGCCCACTTCGTCAAGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

153

Amino Acids

17.15

Weight (kDa)

4.75

Isoelectric Point (pI)

29.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 2 - 151 6.6e-48 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 55
Acc36I ACCTGC 1 cut(s) 55
AciI CCGC 1 cut(s) 406
AclWI GGATC 1 cut(s) 438
AcsI RAATTY 1 cut(s) 29
AfaI GTAC 1 cut(s) 401
AgsI TTSAA 6 cut(s) 11, 35, 73, 211, 298, 359
AluBI AGCT 4 cut(s) 26, 294, 370, 389
AluI AGCT 4 cut(s) 26, 294, 370, 389
Alw26I GTCTC 2 cut(s) 9, 138
AlwI GGATC 1 cut(s) 438
AlwNI CAGNNNCTG 1 cut(s) 47
AoxI GGCC 1 cut(s) 453
ApeKI GCWGC 3 cut(s) 333, 336, 386
ApoI RAATTY 1 cut(s) 29
AsuHPI GGTGA 2 cut(s) 77, 247
BbvI GCAGC 3 cut(s) 345, 348, 398
BcoDI GTCTC 2 cut(s) 9, 138
BfaI CTAG 1 cut(s) 89
BfuAI ACCTGC 1 cut(s) 55
BisI GCNGC 3 cut(s) 334, 337, 387
BlsI GCNGC 3 cut(s) 335, 338, 388
BmrI ACTGGG 1 cut(s) 157
BmsI GCATC 1 cut(s) 427
BmuI ACTGGG 1 cut(s) 157
BpmI CTGGAG 2 cut(s) 144, 375
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bse1I ACTGG 3 cut(s) 115, 127, 152
Bse3DI GCAATG 1 cut(s) 339
BseGI GGATG 2 cut(s) 331, 402
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 3 cut(s) 115, 127, 152
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 3 cut(s) 345, 348, 398
BshFI GGCC 1 cut(s) 455
BslFI GGGAC 1 cut(s) 77
BsmAI GTCTC 2 cut(s) 9, 138
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 1 cut(s) 455
Bsp143I GATC 1 cut(s) 430
BspACI CCGC 1 cut(s) 406
BspANI GGCC 1 cut(s) 455
BspCNI CTCAG 1 cut(s) 363
BspMI ACCTGC 1 cut(s) 55
BspPI GGATC 1 cut(s) 438
BsrDI GCAATG 1 cut(s) 339
BsrI ACTGG 3 cut(s) 115, 127, 152
BssMI GATC 1 cut(s) 430
Bst6I CTCTTC 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 371
BstF5I GGATG 2 cut(s) 331, 402
BstKTI GATC 1 cut(s) 433
BstMAI GTCTC 2 cut(s) 9, 138
BstMBI GATC 1 cut(s) 430
BstV1I GCAGC 3 cut(s) 345, 348, 398
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BsuRI GGCC 1 cut(s) 455
BtsCI GGATG 2 cut(s) 331, 402
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
BveI ACCTGC 1 cut(s) 55
CaiI CAGNNNCTG 1 cut(s) 47
Csp6I GTAC 1 cut(s) 400
CviAII CATG 1 cut(s) 137
CviJI RGCY 7 cut(s) 26, 83, 294, 301, 370, 389, 455
CviKI_1 RGCY 7 cut(s) 26, 83, 294, 301, 370, 389, 455
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 1 cut(s) 371
DpnI GATC 1 cut(s) 432
DpnII GATC 1 cut(s) 430
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco147I AGGCCT 1 cut(s) 455
FaeI CATG 1 cut(s) 140
FaiI YATR 5 cut(s) 119, 138, 183, 248, 363
FaqI GGGAC 1 cut(s) 77
FatI CATG 1 cut(s) 136
Fnu4HI GCNGC 3 cut(s) 334, 337, 387
FokI GGATG 2 cut(s) 338, 389
Fsp4HI GCNGC 3 cut(s) 334, 337, 387
FspBI CTAG 1 cut(s) 89
GluI GCNGC 3 cut(s) 334, 337, 387
GsuI CTGGAG 2 cut(s) 144, 375
HaeIII GGCC 1 cut(s) 455
Hin1II CATG 1 cut(s) 140
HphI GGTGA 2 cut(s) 77, 247
Hpy166II GTNNAC 2 cut(s) 238, 315
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 3 cut(s) 73, 392, 434
Hpy8I GTNNAC 2 cut(s) 238, 315
HpyAV CCTTC 2 cut(s) 134, 260
HpyCH4V TGCA 4 cut(s) 131, 136, 185, 386
HpyF3I CTNAG 1 cut(s) 371
Hsp92II CATG 1 cut(s) 140
Kzo9I GATC 1 cut(s) 430
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 5 cut(s) 60, 96, 108, 133, 405
Lsp1109I GCAGC 3 cut(s) 345, 348, 398
LweI GCATC 1 cut(s) 427
MaeI CTAG 1 cut(s) 89
MalI GATC 1 cut(s) 432
MboI GATC 1 cut(s) 430
MflI RGATCY 1 cut(s) 430
MluCI AATT 1 cut(s) 29
MnlI CCTC 7 cut(s) 73, 184, 210, 226, 322, 370, 373
MseI TTAA 1 cut(s) 168
NdeII GATC 1 cut(s) 430
NlaIII CATG 1 cut(s) 140
PaqCI CACCTGC 1 cut(s) 55
PceI AGGCCT 1 cut(s) 455
PkrI GCNGC 3 cut(s) 335, 338, 388
PstNI CAGNNNCTG 1 cut(s) 47
PsuI RGATCY 1 cut(s) 430
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 3 cut(s) 334, 337, 387
Sau3AI GATC 1 cut(s) 430
SfaNI GCATC 1 cut(s) 427
Sse9I AATT 1 cut(s) 29
SseBI AGGCCT 1 cut(s) 455
SsiI CCGC 1 cut(s) 406
SspMI CTAG 1 cut(s) 89
StuI AGGCCT 1 cut(s) 455
TasI AATT 1 cut(s) 29
TatI WGTACW 1 cut(s) 399
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 1 cut(s) 138
TseI GCWGC 3 cut(s) 333, 336, 386
TspDTI ATGAA 1 cut(s) 153
TspRI CASTG 1 cut(s) 138
XapI RAATTY 1 cut(s) 29
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.