Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000504

Physical Location & Seq

Genomic Coordinates Reverse (-)

12332429 .. 12333904

Gene Structure 1476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G23670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCGACATCGGGAACGTACGTGACGGAGGTTCCGTTGAAAGGATCGGCGGAGAAACACTACAAGAGCTGGAAGAGCGAGAACCATGTCTTCGCTGACGCCATTGGCCACCACATCCAAAATGTCGTTGTTCACGAAGGCGAACATGACTCTCACGGGTCTATCAGGAGTTGGGACTACACATATGATGGAAAGAAGGAGATGTTCAAAGAGAAGAGAGAGATAGATGATGAGAATAAAACATTGACGAAAAGAGGACTGGATGGTCACGTGATGGAGCATCTCAAAGTATTTGATATCATCTACGAATTTATTCCCAAATCTGAGGATAGCTGCGTCTGCAAAATCACTATGATATGGGAGAAGCGCAACGATGACTTTCCCGAACCAAGCGGCTACATGAAATTCGTCAAGCAAATGGTTGTTGACATTGAAGGCCACGTCAACAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010228 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0080184

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

151

Amino Acids

17.52

Weight (kDa)

5.91

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	2 - 150	1.1e-65	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca	FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica	MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica	Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis	pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis	RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata	RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora	Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii	Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa	Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha	Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana	Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	264
AciI	CCGC	2 cut(s)	50, 393
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	2 cut(s)	308, 404
AcvI	CACGTG	1 cut(s)	271
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	3 cut(s)	40, 208, 434
AjiI	CACGTC	1 cut(s)	442
AluBI	AGCT	3 cut(s)	69, 333, 452
AluI	AGCT	3 cut(s)	69, 333, 452
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	2 cut(s)	106, 436
ApeKI	GCWGC	1 cut(s)	333
ApoI	RAATTY	2 cut(s)	308, 404
Asp700I	GAANNNNTTC	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	369
BalI	TGGCCA	1 cut(s)	108
BbrPI	CACGTG	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	320
BccI	CCATC	3 cut(s)	182, 257, 268
BisI	GCNGC	2 cut(s)	334, 394
BlsI	GCNGC	2 cut(s)	335, 395
BmgBI	CACGTC	1 cut(s)	442
BmiI	GGNNCC	1 cut(s)	33
BmsI	GCATC	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	82
BsaAI	YACGTR	2 cut(s)	22, 271
BsaHI	GRCGYC	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	264
BseGI	GGATG	2 cut(s)	114, 268
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	320
BshFI	GGCC	2 cut(s)	108, 438
BsiWI	CGTACG	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	188
BsnI	GGCC	2 cut(s)	108, 438
Bsp143I	GATC	1 cut(s)	44
BspACI	CCGC	2 cut(s)	50, 393
BspANI	GGCC	2 cut(s)	108, 438
BspCNI	CTCAG	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	52
BspQI	GCTCTTC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	264
BssMI	GATC	1 cut(s)	44
BssNI	GRCGYC	1 cut(s)	99
Bst6I	CTCTTC	2 cut(s)	68, 209
BstACI	GRCGYC	1 cut(s)	99
BstBAI	YACGTR	2 cut(s)	22, 271
BstDEI	CTNAG	1 cut(s)	324
BstF5I	GGATG	2 cut(s)	114, 268
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	1 cut(s)	47
BstMBI	GATC	1 cut(s)	44
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 339
BstV1I	GCAGC	1 cut(s)	320
BstV2I	GAAGAC	1 cut(s)	82
BsuRI	GGCC	2 cut(s)	108, 438
BtrI	CACGTC	1 cut(s)	442
BtsCI	GGATG	2 cut(s)	114, 268
CfoI	GCGC	1 cut(s)	369
CseI	GACGC	2 cut(s)	107, 325
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	3 cut(s)	86, 146, 400
CviJI	RGCY	6 cut(s)	69, 108, 333, 396, 438, 452
CviKI_1	RGCY	6 cut(s)	69, 108, 333, 396, 438, 452
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
DrdI	GACNNNNNNGTC	1 cut(s)	264
DseDI	GACNNNNNNGTC	1 cut(s)	264
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	2 cut(s)	68, 209
EarI	CTCTTC	2 cut(s)	68, 209
EciI	GGCGGA	1 cut(s)	65
Eco32I	GATATC	1 cut(s)	298
Eco72I	CACGTG	1 cut(s)	271
EcoRV	GATATC	1 cut(s)	298
FaeI	CATG	3 cut(s)	89, 149, 403
FaiI	YATR	7 cut(s)	87, 147, 184, 186, 353, 358, 401
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	3 cut(s)	85, 145, 399
FauNDI	CATATG	1 cut(s)	184
Fnu4HI	GCNGC	2 cut(s)	334, 394
FokI	GGATG	2 cut(s)	101, 275
Fsp4HI	GCNGC	2 cut(s)	334, 394
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	2 cut(s)	334, 394
HaeIII	GGCC	2 cut(s)	108, 438
HgaI	GACGC	2 cut(s)	107, 325
HhaI	GCGC	1 cut(s)	369
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	3 cut(s)	89, 149, 403
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HincII	GTYRAC	2 cut(s)	427, 445
HindII	GTYRAC	2 cut(s)	427, 445
HindIII	AAGCTT	1 cut(s)	450
HinfI	GANTC	1 cut(s)	149
Hpy166II	GTNNAC	3 cut(s)	133, 427, 445
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	4 cut(s)	12, 134, 166, 383
Hpy8I	GTNNAC	3 cut(s)	133, 427, 445
HpyAV	CCTTC	3 cut(s)	131, 190, 428
HpyCH4IV	ACGT	4 cut(s)	17, 21, 270, 441
HpyCH4V	TGCA	1 cut(s)	342
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 339
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	4 cut(s)	17, 21, 270, 441
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	3 cut(s)	89, 149, 403
HspAI	GCGC	1 cut(s)	367
Kzo9I	GATC	1 cut(s)	44
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	3 cut(s)	55, 151, 245
Lsp1109I	GCAGC	1 cut(s)	320
LweI	GCATC	1 cut(s)	289
MaeII	ACGT	4 cut(s)	17, 21, 270, 441
MaeIII	GTNAC	2 cut(s)	22, 266
MalI	GATC	1 cut(s)	46
MboI	GATC	1 cut(s)	44
MboII	GAAGA	3 cut(s)	82, 85, 226
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	2 cut(s)	308, 404
MluNI	TGGCCA	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	3 cut(s)	22, 248, 319
Mox20I	TGGCCA	1 cut(s)	108
MroXI	GAANNNNTTC	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	1 cut(s)	454
Msp20I	TGGCCA	1 cut(s)	108
MwoI	GCNNNNNNNGC	2 cut(s)	75, 339
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	1 cut(s)	44
NlaIII	CATG	3 cut(s)	89, 149, 403
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	2 cut(s)	22, 266
PciSI	GCTCTTC	1 cut(s)	68
PcsI	WCGNNNNNNNCGW	2 cut(s)	32, 132
PdmI	GAANNNNTTC	1 cut(s)	312
Pfl23II	CGTACG	1 cut(s)	18
PkrI	GCNGC	2 cut(s)	335, 395
PleI	GAGTC	1 cut(s)	143
PmaCI	CACGTG	1 cut(s)	271
PmlI	CACGTG	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	143
Ppu21I	YACGTR	2 cut(s)	22, 271
PspCI	CACGTG	1 cut(s)	271
PspLI	CGTACG	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	33
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	454
SatI	GCNGC	2 cut(s)	334, 394
Sau3AI	GATC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	143
SetI	ASST	8 cut(s)	20, 24, 33, 71, 273, 335, 444, 454
SfaNI	GCATC	1 cut(s)	289
Sse9I	AATT	2 cut(s)	308, 404
SsiI	CCGC	2 cut(s)	50, 393
TaiI	ACGT	4 cut(s)	20, 24, 273, 444
TasI	AATT	2 cut(s)	308, 404
TauI	GCSGC	1 cut(s)	396
Tru1I	TTAA	1 cut(s)	454
Tru9I	TTAA	1 cut(s)	454
TseFI	GTSAC	2 cut(s)	22, 266
TseI	GCWGC	1 cut(s)	333
Tsp45I	GTSAC	2 cut(s)	22, 266
TspDTI	ATGAA	1 cut(s)	416
TspGWI	ACGGA	2 cut(s)	24, 41
XapI	RAATTY	2 cut(s)	308, 404
XmnI	GAANNNNTTC	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.