RLG00000006077

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000504
Physical Location & Seq
Reverse (-)
4148121 .. 4148658
538 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006077

Sequence Viewer

Length: 315 bp
ATGAAGTGTACGTACAAGGTCCTCAGCAACCAGCATCACTTCATTCCCGAAGCCGCTTCCGATCATATACAGGAGGTTGCAGTACATGAAGGTGACTGGGAAACTACTGGTCCTGTCAAGGTTTGGAAATACACCATAGATGGAAGGGTTGAAAGCTTCGAGGAAAAGGTGGAAATAGATGAAGCAAACAAGCCTTACGGGCGTGGAAGAACATGTGCTAGAGCACTCAATGAGAATGATGCTCCACCTCATAACTACCTCCGCTTTGCCGTCAATATGACTCGGGATGTTGATGCTCATCTTCTCAAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

105

Amino Acids

11.97

Weight (kDa)

5.65

Isoelectric Point (pI)

27.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 5 - 64 1.7e-18 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 54, 262
AfaI GTAC 3 cut(s) 10, 14, 84
AflIII ACRYGT 1 cut(s) 212
AgsI TTSAA 1 cut(s) 152
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
Alw21I GWGCWC 1 cut(s) 226
Ama87I CYCGRG 1 cut(s) 282
AspS9I GGNCC 2 cut(s) 19, 110
AsuHPI GGTGA 1 cut(s) 104
AvaI CYCGRG 1 cut(s) 282
AvaII GGWCC 2 cut(s) 19, 110
BarI GAAGNNNNNNTAC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 226
BbvCI CCTCAGC 1 cut(s) 23
BccI CCATC 1 cut(s) 134
BceAI ACGGC 1 cut(s) 254
BfaI CTAG 1 cut(s) 219
BglI GCCNNNNNGGC 1 cut(s) 199
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme18I GGWCC 2 cut(s) 19, 110
BmeT110I CYCGRG 1 cut(s) 282
BmgT120I GGNCC 2 cut(s) 19, 110
BmrI ACTGGG 1 cut(s) 106
BmsI GCATC 3 cut(s) 43, 229, 283
BmuI ACTGGG 1 cut(s) 106
Bpu10I CCTNAGC 1 cut(s) 23
BpuEI CTTGAG 1 cut(s) 290
BsaAI YACGTR 1 cut(s) 12
BsaBI GATNNNNATC 1 cut(s) 297
Bse1I ACTGG 2 cut(s) 101, 112
Bse8I GATNNNNATC 1 cut(s) 297
BseGI GGATG 1 cut(s) 292
BseJI GATNNNNATC 1 cut(s) 297
BseMII CTCAG 1 cut(s) 37
BseNI ACTGG 2 cut(s) 101, 112
BsiHKAI GWGCWC 1 cut(s) 226
BsiHKCI CYCGRG 1 cut(s) 282
BsoBI CYCGRG 1 cut(s) 282
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 2 cut(s) 54, 262
BspCNI CTCAG 1 cut(s) 36
BsrI ACTGG 2 cut(s) 101, 112
BssMI GATC 1 cut(s) 61
BstBAI YACGTR 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 292
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstNSI RCATGY 1 cut(s) 216
BstSNI TACGTA 1 cut(s) 12
BtsCI GGATG 1 cut(s) 292
Cfr13I GGNCC 2 cut(s) 19, 110
Csp6I GTAC 3 cut(s) 9, 13, 83
CviAII CATG 2 cut(s) 86, 213
CviJI RGCY 3 cut(s) 53, 156, 193
CviKI_1 RGCY 3 cut(s) 53, 156, 193
CviQI GTAC 3 cut(s) 9, 13, 83
DdeI CTNAG 1 cut(s) 23
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
Eco105I TACGTA 1 cut(s) 12
Eco47I GGWCC 2 cut(s) 19, 110
Eco88I CYCGRG 1 cut(s) 282
EcoO109I RGGNCCY 1 cut(s) 19
FaeI CATG 2 cut(s) 89, 216
FaiI YATR 7 cut(s) 66, 68, 87, 137, 214, 252, 278
FatI CATG 2 cut(s) 85, 212
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 299
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 219
GluI GCNGC 1 cut(s) 54
Hin1II CATG 2 cut(s) 89, 216
HindIII AAGCTT 1 cut(s) 154
HinfI GANTC 1 cut(s) 280
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 2 cut(s) 47, 284
Hpy8I GTNNAC 1 cut(s) 9
HpyAV CCTTC 2 cut(s) 83, 138
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
HpyF3I CTNAG 1 cut(s) 23
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 2 cut(s) 89, 216
Kzo9I GATC 1 cut(s) 61
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 5 cut(s) 44, 56, 82, 93, 126
LweI GCATC 3 cut(s) 43, 229, 283
MaeI CTAG 1 cut(s) 219
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 1 cut(s) 92
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 2 cut(s) 219, 293
MhlI GDGCHC 1 cut(s) 226
MlyI GAGTC 1 cut(s) 274
MnlI CCTC 5 cut(s) 32, 67, 154, 258, 269
MslI CAYNNNNRTG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 199
NdeII GATC 1 cut(s) 61
NlaIII CATG 2 cut(s) 89, 216
NmuCI GTSAC 1 cut(s) 92
NspI RCATGY 1 cut(s) 216
PciI ACATGT 1 cut(s) 212
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
Ppu21I YACGTR 1 cut(s) 12
PpuMI RGGWCCY 1 cut(s) 19
PscI ACATGT 1 cut(s) 212
Psp5II RGGWCCY 1 cut(s) 19
PspPI GGNCC 2 cut(s) 19, 110
PspPPI RGGWCCY 1 cut(s) 19
RsaI GTAC 3 cut(s) 10, 14, 84
RsaNI GTAC 3 cut(s) 9, 13, 83
RseI CAYNNNNRTG 1 cut(s) 90
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 2 cut(s) 19, 110
SchI GAGTC 1 cut(s) 274
SduI GDGCHC 1 cut(s) 226
SetI ASST 9 cut(s) 14, 21, 78, 94, 123, 158, 171, 250, 261
SfaNI GCATC 3 cut(s) 43, 229, 283
SinI GGWCC 2 cut(s) 19, 110
SmiMI CAYNNNNRTG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
SnaBI TACGTA 1 cut(s) 12
SsiI CCGC 2 cut(s) 54, 262
SspMI CTAG 1 cut(s) 219
TaiI ACGT 1 cut(s) 14
TaqI TCGA 1 cut(s) 159
TatI WGTACW 1 cut(s) 82
TauI GCSGC 1 cut(s) 56
TseFI GTSAC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 4 cut(s) 17, 31, 102, 195
VpaK11BI GGWCC 2 cut(s) 19, 110
XceI RCATGY 1 cut(s) 216
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.