MD16G1026200.v1.1

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000504
Physical Location & Seq
Reverse (-)
1862558 .. 1863354
797 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1026200.v1.1.491

Sequence Viewer

Length: 387 bp
ATGGTTCTGCATGGTAAAATTGGGACTGAAATAGAAATTAAGGCACCAGCTGACAAGTTGTACAACATGTTCAAGAGCGCCCACCTCATCCCAAACATTTCTAATACCCATATCAAGGGAGTTGATGTGCATGAAGGAGACTGGGAAACACACGGCTCTATTAAGATTTGGAAATATGAACTAGTTGTGCTCAGATCATCATACACTCATAGTTATAACAGCTTCAAGGGTGTCTATAAATTCACTCAAAAAGATGAAAGCACCTGCATTGCCAACCTGTGGATCGAATACGAGAAACTGAATGAGAATGTTGAAGCTCCAGATAGATATGTCGGTTTGATGGTTAAACTCGTCCAGGATCTTGACGCTCACTTTCTGGGAGCATAA

Protein Analysis

129

Amino Acids

14.68

Weight (kDa)

6.14

Isoelectric Point (pI)

20.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 4 - 60 1.7e-18 Pathogenesis-related protein Bet v 1 family
Bet_v_1 PF00407 68 - 126 8.9e-11 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
AarI CACCTGC 1 cut(s) 272
Acc36I ACCTGC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 43
AccB7I CCANNNNNTGG 1 cut(s) 279
AclWI GGATC 2 cut(s) 290, 366
AcsI RAATTY 1 cut(s) 239
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 2 cut(s) 115, 279
AflIII ACRYGT 1 cut(s) 66
AgsI TTSAA 3 cut(s) 73, 226, 314
AhlI ACTAGT 1 cut(s) 181
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 3 cut(s) 50, 222, 317
AluI AGCT 3 cut(s) 50, 222, 317
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 2 cut(s) 290, 366
ApoI RAATTY 1 cut(s) 239
AspLEI GCGC 1 cut(s) 80
BanI GGYRCC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 192
BccI CCATC 1 cut(s) 334
BceAI ACGGC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 356
BcoDI GTCTC 1 cut(s) 132
BcuI ACTAGT 1 cut(s) 181
BfaI CTAG 1 cut(s) 182
BfoI RGCGCY 1 cut(s) 81
BfuAI ACCTGC 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 356
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 356
BmrI ACTGGG 1 cut(s) 151
BmuI ACTGGG 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 303
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 279
Bse1I ACTGG 1 cut(s) 146
Bse3DI GCAATG 1 cut(s) 267
BseBI CCWGG 1 cut(s) 356
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 2 cut(s) 115, 279
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 205
BseNI ACTGG 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 192
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 2 cut(s) 115, 279
BsmAI GTCTC 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 192
Bsp1407I TGTACA 1 cut(s) 60
Bsp143I GATC 3 cut(s) 194, 282, 358
BspCNI CTCAG 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 45
BspMI ACCTGC 1 cut(s) 272
BspPI GGATC 2 cut(s) 290, 366
BspT107I GGYRCC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 267
BsrGI TGTACA 1 cut(s) 60
BsrI ACTGG 1 cut(s) 146
BssMI GATC 3 cut(s) 194, 282, 358
Bst2UI CCWGG 1 cut(s) 356
BstAUI TGTACA 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 191
BstF5I GGATG 1 cut(s) 87
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 3 cut(s) 197, 285, 361
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 3 cut(s) 194, 282, 358
BstNI CCWGG 1 cut(s) 356
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 354
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BtsCI GGATG 1 cut(s) 87
BveI ACCTGC 1 cut(s) 272
CfoI GCGC 1 cut(s) 80
CseI GACGC 1 cut(s) 374
Csp6I GTAC 1 cut(s) 61
CviAII CATG 3 cut(s) 11, 67, 131
CviJI RGCY 4 cut(s) 50, 156, 222, 317
CviKI_1 RGCY 4 cut(s) 50, 156, 222, 317
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 1 cut(s) 191
DpnI GATC 3 cut(s) 196, 284, 360
DpnII GATC 3 cut(s) 194, 282, 358
EcoRII CCWGG 1 cut(s) 354
FaeI CATG 3 cut(s) 14, 70, 134
FaqI GGGAC 1 cut(s) 37
FatI CATG 3 cut(s) 10, 66, 130
FokI GGATG 1 cut(s) 74
FspBI CTAG 1 cut(s) 182
GlaI GCGC 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 303
HaeII RGCGCY 1 cut(s) 81
HgaI GACGC 1 cut(s) 374
HhaI GCGC 1 cut(s) 80
Hin1II CATG 3 cut(s) 14, 70, 134
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 194
Hpy188III TCNNGA 3 cut(s) 73, 320, 362
HpyAV CCTTC 1 cut(s) 128
HpyCH4V TGCA 3 cut(s) 10, 130, 267
HpyF3I CTNAG 1 cut(s) 191
Hsp92II CATG 3 cut(s) 14, 70, 134
HspAI GCGC 1 cut(s) 78
Kzo9I GATC 3 cut(s) 194, 282, 358
LmnI GCTCC 2 cut(s) 322, 380
LpnPI CCDG 8 cut(s) 60, 127, 277, 290, 333, 341, 362, 368
MaeI CTAG 1 cut(s) 182
MalI GATC 3 cut(s) 196, 284, 360
MboI GATC 3 cut(s) 194, 282, 358
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 3 cut(s) 18, 36, 239
MnlI CCTC 1 cut(s) 95
MseI TTAA 3 cut(s) 39, 162, 345
MspA1I CMGCKG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 356
MvaI CCWGG 1 cut(s) 356
NdeII GATC 3 cut(s) 194, 282, 358
NlaIII CATG 3 cut(s) 14, 70, 134
NlaIV GGNNCC 1 cut(s) 45
NspI RCATGY 1 cut(s) 70
PaqCI CACCTGC 1 cut(s) 272
PciI ACATGT 1 cut(s) 66
PflMI CCANNNNNTGG 1 cut(s) 279
PfoI TCCNGGA 1 cut(s) 354
PscI ACATGT 1 cut(s) 66
PsiI TTATAA 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
PspN4I GGNNCC 1 cut(s) 45
PsrI GAACNNNNNNTAC 2 cut(s) 53, 85
PsuI RGATCY 1 cut(s) 358
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SaqAI TTAA 3 cut(s) 39, 162, 345
Sau3AI GATC 3 cut(s) 194, 282, 358
ScrFI CCNGG 1 cut(s) 356
SduI GDGCHC 1 cut(s) 192
SetI ASST 6 cut(s) 52, 87, 224, 266, 279, 319
SpeI ACTAGT 1 cut(s) 181
Sse9I AATT 3 cut(s) 18, 36, 239
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 354
TaqI TCGA 1 cut(s) 285
TasI AATT 3 cut(s) 18, 36, 239
TatI WGTACW 1 cut(s) 60
Tru1I TTAA 3 cut(s) 39, 162, 345
Tru9I TTAA 3 cut(s) 39, 162, 345
TspDTI ATGAA 3 cut(s) 147, 192, 270
Van91I CCANNNNNTGG 1 cut(s) 279
XapI RAATTY 1 cut(s) 239
XceI RCATGY 1 cut(s) 70
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.