Rroxscaffold_5G00382500

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000504
Physical Location & Seq
Forward (+)
62336647 .. 62337368
722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00382500.1

Sequence Viewer

Length: 480 bp
ATGACAGATATGACTTTGAGTACTGATACTACTGGCCGCGGTTATCAAACTTACCAGGTGGAGACTCTGGAGGAGCTGGTAGAGATCAAAGCTTCAGCTGATGAAGTGTACAAGGTCCTCAGCAACCAGCATCACCTCATTCCCGAAGCCGCTTCCGATCATATACAGGAGGTTGCAGTGCATGAAGGTGACTGGGAAACTACTGGTCCTGTCAAGGTTTGGAAATACACCATAGATGGAAGGGTTGAAAGCTTCAAGGAAAAGGTGGAAATAGATGAAGCAAACAAGCCTTACGGGTGTGGAAGAACATGTGCTAGAGCAGTACGTACAGAAGCTATAAGGTCACATTTCAGGTCATTTCTAAGAGTACTACTGGTCAGGAAGGAGAAGGAAGTTTGGTCAAAATTACTGTGGAATATGGGAAGCTCAATGAGAATGGTGCTCCACCTCAGAACTACCTCCGCTTTGCCGTCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

159

Amino Acids

18.2

Weight (kDa)

6.31

Isoelectric Point (pI)

26.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 20 - 96 1.2e-24 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 39
AciI CCGC 4 cut(s) 37, 39, 150, 462
AcoI YGGCCR 1 cut(s) 34
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 5 cut(s) 22, 110, 324, 328, 369
AflIII ACRYGT 1 cut(s) 308
AgsI TTSAA 2 cut(s) 248, 256
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 6 cut(s) 76, 92, 98, 252, 335, 426
AluI AGCT 6 cut(s) 76, 92, 98, 252, 335, 426
Alw21I GWGCWC 1 cut(s) 444
Alw26I GTCTC 1 cut(s) 56
AoxI GGCC 1 cut(s) 34
AspS9I GGNCC 2 cut(s) 115, 206
AsuHPI GGTGA 2 cut(s) 125, 200
AvaII GGWCC 2 cut(s) 115, 206
Bbv12I GWGCWC 1 cut(s) 444
BbvCI CCTCAGC 1 cut(s) 119
BccI CCATC 1 cut(s) 230
BceAI ACGGC 1 cut(s) 454
BciT130I CCWGG 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 315
BisI GCNGC 2 cut(s) 37, 150
BlsI GCNGC 2 cut(s) 38, 151
BmcAI AGTACT 2 cut(s) 22, 369
Bme1390I CCNGG 1 cut(s) 56
Bme18I GGWCC 2 cut(s) 115, 206
BmgT120I GGNCC 2 cut(s) 115, 206
BmrFI CCNGG 1 cut(s) 56
BmrI ACTGGG 1 cut(s) 202
BmsI GCATC 1 cut(s) 139
BmuI ACTGGG 1 cut(s) 202
BpmI CTGGAG 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 119
BsaAI YACGTR 1 cut(s) 326
BsaJI CCNNGG 1 cut(s) 37
Bse1I ACTGG 4 cut(s) 37, 197, 208, 378
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 37
BseMII CTCAG 2 cut(s) 133, 463
BseNI ACTGG 4 cut(s) 37, 197, 208, 378
BseRI GAGGAG 1 cut(s) 86
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 444
BsmAI GTCTC 1 cut(s) 56
BsnI GGCC 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 444
Bsp1407I TGTACA 1 cut(s) 108
Bsp143I GATC 2 cut(s) 84, 157
BspACI CCGC 4 cut(s) 37, 39, 150, 462
BspANI GGCC 1 cut(s) 36
BspCNI CTCAG 2 cut(s) 132, 462
BspFNI CGCG 1 cut(s) 39
BsrGI TGTACA 1 cut(s) 108
BsrI ACTGG 4 cut(s) 37, 197, 208, 378
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 2 cut(s) 84, 157
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 411
BstAUI TGTACA 1 cut(s) 108
BstBAI YACGTR 1 cut(s) 326
BstDEI CTNAG 3 cut(s) 119, 362, 449
BstDSI CCRYGG 1 cut(s) 37
BstFNI CGCG 1 cut(s) 39
BstKTI GATC 2 cut(s) 87, 160
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 2 cut(s) 84, 157
BstNI CCWGG 1 cut(s) 56
BstNSI RCATGY 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 54
BstSNI TACGTA 1 cut(s) 326
BstUI CGCG 1 cut(s) 39
BsuRI GGCC 1 cut(s) 36
BtgI CCRYGG 1 cut(s) 37
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 183
Cfr13I GGNCC 2 cut(s) 115, 206
Cfr42I CCGCGG 1 cut(s) 40
CsiI ACCWGGT 1 cut(s) 54
Csp6I GTAC 5 cut(s) 21, 109, 323, 327, 368
CviAII CATG 2 cut(s) 182, 309
CviJI RGCY 9 cut(s) 36, 76, 92, 98, 149, 252, 289, 335, 426
CviKI_1 RGCY 9 cut(s) 36, 76, 92, 98, 149, 252, 289, 335, 426
CviQI GTAC 5 cut(s) 21, 109, 323, 327, 368
DdeI CTNAG 3 cut(s) 119, 362, 449
DpnI GATC 2 cut(s) 86, 159
DpnII GATC 2 cut(s) 84, 157
EaeI YGGCCR 1 cut(s) 34
Eco105I TACGTA 1 cut(s) 326
Eco47I GGWCC 2 cut(s) 115, 206
Eco57I CTGAAG 1 cut(s) 78
EcoO109I RGGNCCY 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 54
FaeI CATG 2 cut(s) 185, 312
FaiI YATR 9 cut(s) 11, 162, 164, 183, 233, 310, 338, 419, 478
FatI CATG 2 cut(s) 181, 308
Fnu4HI GCNGC 2 cut(s) 37, 150
Fsp4HI GCNGC 2 cut(s) 37, 150
FspBI CTAG 1 cut(s) 315
GluI GCNGC 2 cut(s) 37, 150
GsuI CTGGAG 1 cut(s) 89
HaeIII GGCC 1 cut(s) 36
Hin1II CATG 2 cut(s) 185, 312
HindIII AAGCTT 2 cut(s) 90, 250
HinfI GANTC 1 cut(s) 64
HphI GGTGA 2 cut(s) 125, 200
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 157, 452
Hpy188III TCNNGA 3 cut(s) 68, 143, 379
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 4 cut(s) 179, 234, 376, 382
HpyCH4III ACNGT 1 cut(s) 411
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 2 cut(s) 176, 181
HpyF3I CTNAG 3 cut(s) 119, 362, 449
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 2 cut(s) 185, 312
KspI CCGCGG 1 cut(s) 40
Kzo9I GATC 2 cut(s) 84, 157
LmnI GCTCC 2 cut(s) 73, 447
LweI GCATC 1 cut(s) 139
MabI ACCWGGT 1 cut(s) 54
MaeI CTAG 1 cut(s) 315
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 2 cut(s) 188, 342
MalI GATC 2 cut(s) 86, 159
MboI GATC 2 cut(s) 84, 157
MboII GAAGA 1 cut(s) 315
MhlI GDGCHC 1 cut(s) 444
MluCI AATT 1 cut(s) 404
MlyI GAGTC 1 cut(s) 58
MnlI CCTC 6 cut(s) 64, 128, 146, 163, 458, 469
MslI CAYNNNNRTG 1 cut(s) 186
MspA1I CMGCKG 2 cut(s) 39, 98
MspR9I CCNGG 1 cut(s) 56
MvaI CCWGG 1 cut(s) 56
MvnI CGCG 1 cut(s) 39
NdeII GATC 2 cut(s) 84, 157
NlaIII CATG 2 cut(s) 185, 312
NmuCI GTSAC 2 cut(s) 188, 342
NspI RCATGY 1 cut(s) 312
PciI ACATGT 1 cut(s) 308
PkrI GCNGC 2 cut(s) 38, 151
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Ppu21I YACGTR 1 cut(s) 326
PpuMI RGGWCCY 1 cut(s) 115
PscI ACATGT 1 cut(s) 308
Psp5II RGGWCCY 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PspPI GGNCC 2 cut(s) 115, 206
PspPPI RGGWCCY 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 98
RsaI GTAC 5 cut(s) 22, 110, 324, 328, 369
RsaNI GTAC 5 cut(s) 21, 109, 323, 327, 368
RseI CAYNNNNRTG 1 cut(s) 186
SacII CCGCGG 1 cut(s) 40
SatI GCNGC 2 cut(s) 37, 150
Sau3AI GATC 2 cut(s) 84, 157
Sau96I GGNCC 2 cut(s) 115, 206
ScaI AGTACT 2 cut(s) 22, 369
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 1 cut(s) 444
SexAI ACCWGGT 1 cut(s) 54
SfaNI GCATC 1 cut(s) 139
Sfr303I CCGCGG 1 cut(s) 40
SgrBI CCGCGG 1 cut(s) 40
SinI GGWCC 2 cut(s) 115, 206
SmiMI CAYNNNNRTG 1 cut(s) 186
SnaBI TACGTA 1 cut(s) 326
Sse9I AATT 1 cut(s) 404
SsiI CCGC 4 cut(s) 37, 39, 150, 462
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 411
TaiI ACGT 1 cut(s) 328
TasI AATT 1 cut(s) 404
TatI WGTACW 3 cut(s) 20, 108, 367
TauI GCSGC 2 cut(s) 39, 152
TscAI CASTG 1 cut(s) 183
TseFI GTSAC 2 cut(s) 188, 342
Tsp45I GTSAC 2 cut(s) 188, 342
TspDTI ATGAA 3 cut(s) 117, 198, 291
TspRI CASTG 1 cut(s) 183
VpaK11BI GGWCC 2 cut(s) 115, 206
XceI RCATGY 1 cut(s) 312
XspI CTAG 1 cut(s) 315
ZrmI AGTACT 2 cut(s) 22, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.