Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000504

Physical Location & Seq

Genomic Coordinates Reverse (-)

5159192 .. 5160179

Gene Structure 988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G14960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCGATGTCGGGAACATACGTGACGGATGTGCCTCTTAAGGGATCGGCGGAGAAACACTATAAGAGGTGGAGGAGCGAGAACCACCTCGTCCCTGAAGCTATCGGCCACCTCATCCAAGGTGTCACCGTCCATGACGGCGATTGGGACTCTCACGGCACCATCAAAATCTGGAACTACACTCGTGATGGGAAAGAGGAAGTATTGAAGGAGAGGATAGAGATGGACGACGAGAATATGGCGGTGACGATCAATGGACTCGATGGTCACGTCATGGAGGTCCTCAAGGTTTATGTCACGACGTTACATTTCATCCCCGAGTCCAAAGATGGCTGCGTCTGCAAAATTACTATGGTCTGGGAGAAACGCACCGAAGACTCCCCAGAGCCCATCGAATTCATGAAGTTCGTGGAACAGATGATTGCTCACATGGACGACCACATCCTCCAAAACCAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010228 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0080184

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

153

Amino Acids

17.68

Weight (kDa)

5.12

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	2 - 151	3.3e-64	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14930 AT1G14940 AT1G14940 AT1G14950 AT1G14960 AT1G30990 AT2G01520 AT2G01530 AT3G26450 AT3G26460 AT4G14060 AT4G23670 AT4G23680
fragaria_vesca	FvH4_4g32700 FvH4_4g32700 FvH4_4g32700 FvH4_4g32720 FvH4_4g32731
malus_domestica	MD13G1023200.v1.1 MD13G1023300.v1.1 MD16G1024100.v1.1 MD16G1024400.v1.1 MD16G1024700.v1.1 MD16G1024900.v1.1 MD16G1025300.v1.1 MD16G1025600.v1.1 MD16G1025800.v1.1 MD16G1026000.v1.1 MD16G1026200.v1.1
prunus_persica	Prupe.1G327300_v2.0.a1 Prupe.1G327400_v2.0.a1 Prupe.1G327500_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327600_v2.0.a1 Prupe.1G327700_v2.0.a1 Prupe.1G328000_v2.0.a1 Prupe.1G328100_v2.0.a1 Prupe.1G328200_v2.0.a1 Prupe.1G328400_v2.0.a1
pyrus_communis	pycom13g02140 pycom13g02160 pycom13g02170 pycom16g02120 pycom16g02130 pycom16g02170 pycom16g02180 pycom16g02200 pycom16g02210
rosa_chinensis	RchiOBHm_Chr4g0441631 RchiOBHm_Chr4g0441641 RchiOBHm_Chr4g0441681 RchiOBHm_Chr4g0441721
rosa_laevigata	RLG00000006072 RLG00000006074 RLG00000006075 RLG00000006077 RLG00000006078 RLG00000006079 RLG00000006080 RLG00000034069
rosa_multiflora	Rmu_sc0000353.1_g000008 Rmu_sc0000353.1_g000014 Rmu_sc0000353.1_g000021 Rmu_ssc0000486.1_g000039
rosa_roxburghii	Rroxscaffold_5G00382450 Rroxscaffold_5G00382460 Rroxscaffold_5G00382500 Rroxscaffold_5G00382510
rosa_rugosa	Rorug04G0335100 Rorug04G0335300 Rorug04G0335400 Rorug04G0335500
rosa_samantha	Rh4AG386500 Rh4AG386600 Rh4AG386700 Rh4AG386900 Rh4AG387100 Rh4BG400700 Rh4BG400800 Rh4CG415700 Rh4CG415800 Rh4DG393400 Rh4DG393500 Rh4DG393900 Rh4DG394200
rosa_wichuraiana	Rw4G033390 Rw4G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	264
AccB1I	GGYRCC	1 cut(s)	158
AciI	CCGC	2 cut(s)	50, 242
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	395
AcuI	CTGAAG	1 cut(s)	117
AfiI	CCNNNNNNNGG	2 cut(s)	41, 454
AflII	CTTAAG	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	208
AjiI	CACGTC	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
AlwI	GGATC	1 cut(s)	52
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	333
ApoI	RAATTY	1 cut(s)	395
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	118, 256
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	280
BanI	GGYRCC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	390
BauI	CACGAG	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	381
BbvI	GCAGC	1 cut(s)	320
BccI	CCATC	6 cut(s)	170, 182, 217, 257, 323, 398
BceAI	ACGGC	2 cut(s)	154, 172
BciT130I	CCWGG	1 cut(s)	455
BfrI	CTTAAG	1 cut(s)	38
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	455
Bme18I	GGWCC	1 cut(s)	280
BmeT110I	CYCGRG	1 cut(s)	317
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	1 cut(s)	455
BpiI	GAAGAC	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	22
BsaJI	CCNNGG	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 454
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	4 cut(s)	34, 114, 312, 441
BseLI	CCNNNNNNNGG	2 cut(s)	41, 454
BseRI	GAGGAG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	320
BshFI	GGCC	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	317
BslFI	GGGAC	2 cut(s)	77, 161
BslI	CCNNNNNNNGG	2 cut(s)	41, 454
BsmFI	GGGAC	2 cut(s)	77, 161
BsnI	GGCC	1 cut(s)	108
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	44, 249
BspACI	CCGC	2 cut(s)	50, 242
BspANI	GGCC	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	399
BspLI	GGNNCC	1 cut(s)	160
BspPI	GGATC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	158
BspTI	CTTAAG	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	2 cut(s)	44, 249
BssSI	CACGAG	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	130
BstAFI	CTTAAG	1 cut(s)	38
BstBAI	YACGTR	1 cut(s)	22
BstF5I	GGATG	4 cut(s)	34, 114, 312, 441
BstKTI	GATC	2 cut(s)	47, 252
BstMBI	GATC	2 cut(s)	44, 249
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstNI	CCWGG	1 cut(s)	455
BstSCI	CCNGG	1 cut(s)	453
BstV1I	GCAGC	1 cut(s)	320
BstV2I	GAAGAC	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	108
BtgZI	GCGATG	1 cut(s)	20
BtrI	CACGTC	1 cut(s)	271
BtsCI	GGATG	4 cut(s)	34, 114, 312, 441
CciI	TCATGA	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	280
CseI	GACGC	1 cut(s)	325
CviAII	CATG	4 cut(s)	134, 274, 400, 430
CviJI	RGCY	4 cut(s)	101, 108, 333, 388
CviKI_1	RGCY	4 cut(s)	101, 108, 333, 388
DpnI	GATC	2 cut(s)	46, 251
DpnII	GATC	2 cut(s)	44, 249
DrdI	GACNNNNNNGTC	1 cut(s)	264
DseDI	GACNNNNNNGTC	1 cut(s)	264
EaeI	YGGCCR	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	280
EcoRI	GAATTC	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	453
EcoT14I	CCWWGG	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	4 cut(s)	137, 277, 403, 433
FaiI	YATR	9 cut(s)	19, 63, 135, 239, 275, 294, 353, 401, 431
FaqI	GGGAC	2 cut(s)	77, 161
FatI	CATG	4 cut(s)	133, 273, 399, 429
Fnu4HI	GCNGC	1 cut(s)	334
FokI	GGATG	4 cut(s)	41, 101, 299, 428
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	1 cut(s)	334
GluI	GCNGC	1 cut(s)	334
HaeIII	GGCC	1 cut(s)	108
HgaI	GACGC	1 cut(s)	325
Hin1II	CATG	4 cut(s)	137, 277, 403, 433
HinfI	GANTC	4 cut(s)	149, 258, 320, 377
HphI	GGTGA	2 cut(s)	118, 256
Hpy188III	TCNNGA	5 cut(s)	12, 172, 185, 298, 400
Hpy99I	CGWCG	2 cut(s)	233, 304
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	3 cut(s)	21, 270, 302
HpyCH4V	TGCA	1 cut(s)	342
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
HpySE526I	ACGT	3 cut(s)	21, 270, 302
Hsp92II	CATG	4 cut(s)	137, 277, 403, 433
Kzo9I	GATC	2 cut(s)	44, 249
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	5 cut(s)	108, 157, 343, 396, 440
Lsp1109I	GCAGC	1 cut(s)	320
MaeII	ACGT	3 cut(s)	21, 270, 302
MaeIII	GTNAC	6 cut(s)	22, 124, 244, 266, 295, 303
MalI	GATC	2 cut(s)	46, 251
MboI	GATC	2 cut(s)	44, 249
MboII	GAAGA	1 cut(s)	386
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	2 cut(s)	345, 395
MlyI	GAGTC	4 cut(s)	143, 252, 329, 371
MseI	TTAA	1 cut(s)	39
MspCI	CTTAAG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	455
MwoI	GCNNNNNNNGC	1 cut(s)	339
NdeII	GATC	2 cut(s)	44, 249
NlaIII	CATG	4 cut(s)	137, 277, 403, 433
NlaIV	GGNNCC	1 cut(s)	160
NmuCI	GTSAC	5 cut(s)	22, 124, 244, 266, 295
PagI	TCATGA	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PkrI	GCNGC	1 cut(s)	335
PleI	GAGTC	4 cut(s)	143, 252, 328, 371
PpsI	GAGTC	4 cut(s)	143, 252, 328, 371
Ppu21I	YACGTR	1 cut(s)	22
PpuMI	RGGWCCY	1 cut(s)	280
Psp5II	RGGWCCY	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	453
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	280
PspPPI	RGGWCCY	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	2 cut(s)	44, 249
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	4 cut(s)	143, 252, 329, 371
ScrFI	CCNGG	1 cut(s)	455
SduI	GDGCHC	1 cut(s)	390
SinI	GGWCC	1 cut(s)	280
SmlI	CTYRAG	2 cut(s)	38, 284
SmoI	CTYRAG	2 cut(s)	38, 284
Sse9I	AATT	2 cut(s)	345, 395
SsiI	CCGC	2 cut(s)	50, 242
StyD4I	CCNGG	1 cut(s)	453
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	3 cut(s)	24, 273, 305
TaqI	TCGA	2 cut(s)	261, 393
TasI	AATT	2 cut(s)	345, 395
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseFI	GTSAC	5 cut(s)	22, 124, 244, 266, 295
TseI	GCWGC	1 cut(s)	333
Tsp45I	GTSAC	5 cut(s)	22, 124, 244, 266, 295
TspDTI	ATGAA	3 cut(s)	301, 388, 416
TspGWI	ACGGA	1 cut(s)	41
Vha464I	CTTAAG	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	280
XapI	RAATTY	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.